Designing and optimizing AAV-mediated gene therapy for neurodegenerative diseases: from bench to bedside
Open accessAbstract
Recombinant adeno-associated viruses (rAAVs) have emerged as an attractive tool for gene delivery, and demonstrated tremendous promise in gene therapy and gene editing-therapeutic modalities with potential "one-and-done" treatment benefits compared to conventional drugs. Given their tropisms for the central nervous system (CNS) across various species including humans, rAAVs have been extensively investigated in both pre-clinical and clinical studies targeting neurodegenerative disease. However, major challenges remain in the application of rAAVs for CNS gene therapy, such as suboptimal vector design, low CNS transduction efficiency and specificity, and therapy-induced immunotoxicity. Therefore, continuing efforts are being made to optimize the rAAV vectors from their "core" genetic payloads to their "coat" or capsid structure. In this review, we describe current approaches for rAAV vector design tailored for transgene expression in the CNS, summarize the development of CNS-targeting AAV serotypes, and highlight recent advancements in AAV capsid engineering, aimed at generating a new generation of rAAVs with improved CNS tropism. Additionally, we discuss various administration routes for delivering rAAVs to the CNS and provide an overview of AAV-mediated gene therapies currently under investigation in clinical trials for the treatment of neurodegenerative diseases.
AI snapshot
Written from the paper’s full text.
TL;DR
This review summarizes rAAV vector design, capsid engineering, CNS delivery routes, and clinical translation for neurodegenerative diseases. It argues that effective AAV therapy requires coordinated optimization of the viral genome, capsid/serotype tropism, administration route, and immune management.
Key findings
- Genome optimization can strongly affect expression and immunity: scAAV increases transduction 5- to 140-fold over ssAAV but reduces packaging capacity to 2.4 kb vs. 4.8 kb and can heighten TLR9/MyD88 innate immune responses; CpG-free ITRs retain potency but reduce yield about threefold; the MVM intron increased liver transgene expression 80-fold; WPRE effects were controversial and showed no effect with EF-1α or CAG promoter plus an intron.
- Capsid engineering has produced CNS-targeted variants: AAV.CPP.16 showed 6- to 249-fold enhancement across 4 mouse strains and fivefold enhancement in non-human primates; AAV.CAP-B10 improved CNS tropism and de-targeted liver; AAV-F gave 65-fold and 171-fold higher astrocyte and neuron transduction than AAV9; 9P31 reached up to 400-fold higher brain transduction.
- Delivery route shapes outcomes: intraparenchymal, intra-CSF (ICV, IT, ICM), intramuscular, and intravenous routes are used; AAV9 and AAV.rh10 cross the BBB but are more efficient in neonates than adults; intra-CSF avoids neutralizing antibodies and liver toxicity but faces flow and surgical limits; IV is non-invasive but raises high-dose immune, liver, DRG, and off-target concerns.
- Clinical trials in Table 1 cover Alzheimer’s disease, Parkinson’s disease, Huntington’s disease, Canavan disease, spinal muscular atrophy, Krabbe disease, and GM1 gangliosidosis; Zolgensma for SMA uses 1.1 × 10^14 vg/kg, and 40–80% of humans are positive for AAV neutralizing antibodies.
Methods
- Narrative review; no primary experiments. It synthesizes literature on rAAV genome design, naturally occurring serotypes, capsid bioengineering, CNS delivery routes, BBB-crossing mechanisms, and clinical trials.
- Data include cited preclinical and clinical studies plus Table 1, which lists AAV-based gene therapy trials by disease, vector, route, dose, target, strategy, phase, sponsor, and identifier.
- Main analysis is qualitative synthesis; no systematic search, meta-analysis, or new patient data are reported.
Limitations
- Stated: major challenges remain, including suboptimal vector design, low CNS transduction efficiency and specificity, therapy-induced immunotoxicity, intra-CSF flow and surgical risks, IV high-dose immune response, DRG toxicity, off-target expression, and pre-existing neutralizing antibodies in 40–80% of humans.
- Evident: as a narrative review, it does not systematically appraise or quantitatively pool evidence; Table 1 includes N/A entries and mixed trial phases/statuses, so comparative efficacy cannot be inferred.
- Evident: many capsid enhancements are species- or strain-dependent—for example, PHP.B/PHP.eB failed to translate into primates—limiting direct clinical extrapolation.
Model-written summary. Check it against the paper before relying on it.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
68 of 139 cited sources checked · 33 supported · 0 flagged · accuracy not yet measured
- Premisecitation
The mouse DLX5/6 enhancer alone can induce specific gene expression in GABAergic interneurons in the forebrain.
“Additionally, Dimidschstein demonstrated that the mouse DLX5/6 enhancer alone can induce specific gene expression in GABAergic interneurons in the forebrain [22].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [22] Dimidschstein J, Chen Q, Tremblay R, Rogers SL, Saldi GA, Guo L, Xu Q, Liu R, Lu C, Chu J, et al. A viral strategy for targeting and manipulating interneurons across vertebrate species. Nat Neurosci. 2016;19(12):1743–9. source
- Interpretationcitation
AAV viral vectors provide valuable opportunities for clinical applications in the treatment of neurodegenerative diseases.
“Thus, AAV viral vectors provide valuable opportunities for clinical applications in the treatment of neurodegenerative diseases [5, 6].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [5] Herzog RW. Encouraging and unsettling findings in long-term follow-up of AAV gene transfer. Mol Ther. 2020;28(2):341–2. source
The main text (page unavailable) describes AAV vectors as suitable for long-term gene therapy and reports clinical benefits for inherited blindness and hemophilia. It does not address treatment of neurodegenerative diseases, so it supports the general clinical potential of AAV vectors but not the disease-specific claim. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [6] Balakrishnan B, Jayandharan GR. Basic biology of adeno-associated virus (AAV) vectors used in gene therapy. Curr Gene Ther. 2014;14(2):86–100. source
- Rests on an assumption: AAV can transduce both dividing and non-dividing cell types for long-term expression of a gene of interest.
- Rests on an assumption: AAV has relatively low immunogenicity and high affinity to neuronal or glial cells compared with other viral vectors.
- Premisecitation
scAAV heightens innate immune response via enhanced activation of TLR9/MyD88 signaling in a dose-dependent manner with induction of IL-6, TNF-α, and other proinflammatory cytokines.
“Notably, scAAV heightens innate immune response via enhanced activation of the TLR9/MyD88 signaling in a dose-dependent manner with induction of IL-6, TNF-α, and other proinflammatory cytokines [13, 14], suggesting increased immunogenicity associated with scAAV.”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [13] Martino AT, Suzuki M, Markusic DM, Zolotukhin I, Ryals RC, Moghimi B, Ertl HC, Muruve DA, Lee B, Herzog RW. The genome of self-complementary adeno-associated viral vectors increases Toll-like receptor 9-dependent innate immune responses in the liver. Blood. 2011;117(24):6459–68. source
- cites [14] Wu T, Topfer K, Lin SW, Li H, Bian A, Zhou XY, High KA, Ertl HC. Self-complementary AAVs induce more potent transgene product-specific immune responses compared to a single-stranded genome. Mol Ther. 2012;20(3):572–9. source
- Premisecitation
Bioengineering of novel AAV variants for BBB-crossing and CNS targeting has achieved some successes, yielding AAV.CPP.16, AAV.CAP-B10, and AAV.cc47 with variable enhancements over AAV9 from mice to NHPs.
“The bioengineering of novel AAV variants in terms of BBB-crossing and CNS targeting has achieved some successes in recent years, yielding AAV.CPP.16 [57], AAV.CAP-B10 [68] and AAV.cc47 [111] with variable enhancements over AAV9 from mice to NHPs.”
Quote in the paperNot a substantial claim2 of 3 sources checked- cites [57] Yao Y, Wang J, Liu Y, Qu Y, Wang K, Zhang Y, Chang Y, Yang Z, Wan J, Liu J, et al. Variants of the adeno-associated virus serotype 9 with enhanced penetration of the blood-brain barrier in rodents and primates. Nat Biomed Eng. 2022;6(11):1257–71. source
- cites [68] Goertsen D, Flytzanis NC, Goeden N, Chuapoco MR, Cummins A, Chen Y, Fan Y, Zhang Q, Sharma J, Duan Y, et al. AAV capsid variants with brain-wide transgene expression and decreased liver targeting after intravenous delivery in mouse and marmoset. Nat Neurosci. 2022;25(1):106–15. source
- cites [111] Gonzalez TJ, Simon KE, Blondel LO, Fanous MM, Roger AL, Maysonet MS, Devlin GW, Smith TJ, Oh DK, Havlik LP, et al. Cross-species evolution of a highly potent AAV variant for therapeutic gene transfer and genome editing. Nat Commun. 2022;13(1):5947. source
- Premisecitation
The circulation of CSF delivers viral vectors to broader CNS regions when compared to IP injection.
“The circulation of CSF delivers viral vectors to broader CNS regions when compared to IP injection [86].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [86] Gray SJ, Nagabhushan Kalburgi S, McCown TJ, Jude Samulski R. Global CNS gene delivery and evasion of anti-AAV-neutralizing antibodies by intrathecal AAV administration in non-human primates. Gene Ther. 2013;20(4):450–9. source
The Introduction (page unavailable) says that injection into CSF allows diffuse delivery to large areas of the brain and spinal cord. The Discussion (page unavailable) reports widespread CNS transduction after lumbar-cistern injection. Neither passage establishes that this delivery reaches broader CNS regions than IP injection; the paper’s described comparisons concern other injection routes. (LLM, conf=0.87)
Experimental — accuracy not yet measured
- Premisecitation
IM delivery strategy is particularly suited for mitigating motor neuron diseases, such as spinal muscular atrophy and amyotrophic lateral sclerosis.
“This strategy is particularly suited for mitigating motor neuron diseases (MNDs), such as spinal muscular atrophy (SMA) [99] and amyotrophic lateral sclerosis (ALS) [101].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [99] Tosolini AP, Sleigh JN. Intramuscular delivery of gene therapy for targeting the nervous system. Front Mol Neurosci. 2020;13:129. source
- cites [101] Chen HH, Yeo HT, Huang YH, Tsai LK, Lai HJ, Tsao YP, Chen SL. AAV-NRIP gene therapy ameliorates motor neuron degeneration and muscle atrophy in ALS model mice. Skelet Muscle. 2024;14(1):17. source
- Premisecitation
Rational design takes in-depth biological knowledge of existing AAV serotypes to predict and refine virus function with increased capsid tropism, enhanced transduction efficiency, and reduced immune response.
“Rational design takes in-depth biological knowledge of existing AAV serotypes to predict and refine virus function with increased capsid tropism, enhanced transduction efficiency, and reduced immune response [55, 56].”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [55] Girod A, Ried M, Wobus C, Lahm H, Leike K, Kleinschmidt J, Deleage G, Hallek M. Genetic capsid modifications allow efficient re-targeting of adeno-associated virus type 2. Nat Med. 1999;5(9):1052–6. source
- cites [56] Lee EJ, Guenther CM, Suh J. Adeno-associated virus (AAV) vectors: rational design strategies for capsid engineering. Curr Opin Biomed Eng. 2018;7:58–63. source
- Premisecitation
Michael and colleagues adopted the Trendelenburg position (lying head approximately 25° below the feet) after intrathecal infusion of AAV9, resulting in a marked improvement of cortical distribution with 15-fold increase in neuron transduction.
“Interestingly, Michael and colleagues adopted Trendelenburg position that lying head approximately 25° below the feet after intrathecal infusion of AAV9, resulting a marked improvement of cortical distribution with 15-fold increase in neuron transduction [92].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [92] Castle MJ, Cheng Y, Asokan A, Tuszynski MH. Physical positioning markedly enhances brain transduction after intrathecal AAV9 infusion. Sci Adv. 2018;4(11):eaau9859. source
- Premisecitation
WPRE showed no effects on transgene expression in both in vitro and in vivo when combined with either EF-1α or CAG promoter in the presence of an intron element.
“Controversially, WPRE showed no effects on transgene expression in both in vitro and in vivo when combined with either EF-1α or CAG promoter in the presence of an intron element [28, 29].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [28] Ramezani A, Hawley TS, Hawley RG. Lentiviral vectors for enhanced gene expression in human hematopoietic cells. Mol Ther. 2000;2(5):458–69. source
- cites [29] Rastegar M, Hotta A, Pasceri P, Makarem M, Cheung AY, Elliott S, Park KJ, Adachi M, Jones FS, Clarke ID, et al. MECP2 isoform-specific vectors with regulated expression for Rett syndrome gene therapy. PLoS ONE. 2009;4(8): e6810. source
The Results section on Mecp2 promoter expression reports experiments with EF1α and MeP, but does not assess WPRE’s effect on transgene expression. Searches for WPRE and for the claimed CAG-promoter and intron combination found no passage addressing that comparison in our copy; no page numbers are available. (LLM, conf=0.76)
Experimental — accuracy not yet measured
- Premisecitation
9P31 achieved up to 400-fold higher brain transduction.
“including 9P31 with up to 400-fold higher brain transduction [130].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [130] Nonnenmacher M, Wang W, Child MA, Ren XQ, Huang C, Ren AZ, Tocci J, Chen Q, Bittner K, Tyson K, et al. Rapid evolution of blood-brain-barrier-penetrating AAV capsids by RNA-driven biopanning. Mol Ther Methods Clin Dev. 2021;20:366–78. source
- Premisecitation
THR peptide specifically binds to transferrin receptor 1 (TfR1).
“a BBB shuttle peptide THR, which specifically binds to the transferrin receptor 1 (TfR1) [143]”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [143] Zhang X, He T, Chai Z, Samulski RJ, Li C. Blood-brain barrier shuttle peptides enhance AAV transduction in the brain after systemic administration. Biomaterials. 2018;176:71–83. source
- Premisecitation
Scavenger receptors MSR1, SCARB1, and SCARA3; insulin-like growth factor receptors IGF1R and IGF2R; antibody transporting receptors FCGRT and TMEM30A; and LEPR, LRP8, CNR1, EPHA2, PTAFR, and CCR2 improve AAV transcytosis.
“They reported, for the first time, that scavenger receptors (MSR1, SCARB1, and SCARA3), insulin-like growth factor receptors (IGF1R and IGF2R), antibody transporting receptors (FCGRT and TMEM30A), as well as LEPR, LRP8, CNR1, EPHA2, PTAFR, and CCR2 improved AAV transcytosis”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [120] Song R, Pekrun K, Khan TA, Zhang F, Pasca SP, Kay MA. Selection of rAAV vectors that cross the human blood-brain barrier and target the central nervous system using a transwell model. Mol Ther Methods Clin Dev. 2022;27:73–88. source
The Results section reports that knocking down every listed receptor reduced transcytosis of two or more rAAVs in the transwell model. The Discussion says these receptors *may* enhance AAV transcytosis and calls for further study of their roles; the claim presents that tentative, model-specific finding as an established improvement. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
Exosome endows AAV vectors with more resistance to anti-AAV neutralizing antibodies.
“it is demonstrated that exosome endows AAV vectors with more resistance to anti-AAV neutralizing antibodies [146].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [146] Gyorgy B, Fitzpatrick Z, Crommentuijn MH, Mu D, Maguire CA. Naturally enveloped AAV vectors for shielding neutralizing antibodies and robust gene delivery in vivo. Biomaterials. 2014;35(26):7598–609. source
- Premisecitation
Targeting oligodendrocytes using AAV/Olig001 is quite efficient for treating Canavan disease in a preclinical study.
“a preclinical study has demonstrated that targeting oligodendrocytes using a novel AAV capsid variant AAV/Olig001 is quite efficient for treating CD [169].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [169] Francis JS, Markov V, Wojtas ID, Gray S, McCown T, Samulski RJ, Figueroa M, Leone P. Preclinical biodistribution, tropism, and efficacy of oligotropic AAV/Olig001 in a mouse model of congenital white matter disease. Mol Ther Methods Clin Dev. 2021;20:520–34. source
- Interpretationreasoning
Mannitol-mediated BBB disruption allows broad CNS distribution of AAV vectors depending on mannitol dose, infusion route, and virus injection timing.
“Considering above, mannitol-mediated BBB disruption allows broad CNS distribution of AAV vectors depending on the mannitol dose, infusion route as well as virus injection timing [133].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [133] McCarty DM, DiRosario J, Gulaid K, Muenzer J, Fu H. Mannitol-facilitated CNS entry of rAAV2 vector significantly delayed the neurological disease progression in MPS IIIB mice. Gene Ther. 2009;16(11):1340–52. source
The Results section reports diffuse CNS transgene expression after IV mannitol and rAAV2 delivery in mice, and shows that vector-injection timing strongly affected CNS entry. The Introduction and Discussion distinguish IV from intra-arterial delivery, but the paper does not establish how changing the mannitol dose or infusion route affects broad AAV distribution. Page numbers are unavailable in our copy. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Premisecitation
AAV1, AAV2, or chimeric AAV1/2 vectors, which showed low BBB-crossing per se, successfully penetrated into directed brain regions after FUS-MB treatment.
“It was reported that IV infusion of AAV1, AAV2 or chimeric AAV1/2 vector, which showed low BBB-crossing per se, successfully penetrated into directed brain regions after FUS-MB treatment [140–142].”
Quote in the paperSubstantial claim3 of 3 sources checked- cites [140] Hsu PH, Wei KC, Huang CY, Wen CJ, Yen TC, Liu CL, Lin YT, Chen JC, Shen CR, Liu HL. Noninvasive and targeted gene delivery into the brain using microbubble-facilitated focused ultrasound. PLoS ONE. 2013;8(2): e57682. source
The Abstract and Discussion report that intravenously administered AAV2 entered targeted, FUS-opened brain regions in mice, while the Introduction and Results describe poor delivery across an intact BBB. The paper does not report FUS-assisted brain delivery of AAV1 or chimeric AAV1/2 vectors, so it supports only the AAV2 portion of the sentence. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [141] Stavarache MA, Petersen N, Jurgens EM, Milstein ER, Rosenfeld ZB, Ballon DJ, Kaplitt MG. Safe and stable noninvasive focal gene delivery to the mammalian brain following focused ultrasound. J Neurosurg. 2018;130(3):989–98. source
- cites [142] Alonso A, Reinz E, Leuchs B, Kleinschmidt J, Fatar M, Geers B, Lentacker I, Hennerici MG, de Smedt SC, Meairs S. Focal delivery of AAV2/1-transgenes into the rat brain by localized ultrasound-induced BBB opening. Mol Ther Nucleic Acids. 2013;2(2): e73. source
- Premisecitation
AAV-F mediated successful CNS transduction in C57BL/6J and BALB/c mice.
“the iTransduce capsid-engineering platform yielded a new variant, namely AAV-F, which mediated successful CNS transduction in C57BL/6 J and BALB/c mice”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [129] Hanlon KS, Meltzer JC, Buzhdygan T, Cheng MJ, Sena-Esteves M, Bennett RE, Sullivan TP, Razmpour R, Gong Y, Ng C, et al. Selection of an efficient AAV vector for robust CNS transgene expression. Mol Ther Methods Clin Dev. 2019;15:320–32. source
- Premisecitation
LY6A homolog is highly and specifically present in brain endothelial cells of C57BL/6J mice but not in BALB/cJ mice and primates.
“However, LY6A homolog is highly and specifically presented in brain endothelial cells of C57BL/6 J mice but not in BALB/cJ mice and primates.”
Quote in the paperSubstantial claim1 of 2 sources checked- cites [118] Huang Q, Chan KY, Tobey IG, Chan YA, Poterba T, Boutros CL, Balazs AB, Daneman R, Bloom JM, Seed C, et al. Delivering genes across the blood-brain barrier: LY6A, a novel cellular receptor for AAV-PHP.B capsids. PLoS One. 2019;14(11): e0225206. source
- cites [119] Hordeaux J, Yuan Y, Clark PM, Wang Q, Martino RA, Sims JJ, Bell P, Raymond A, Stanford WL, Wilson JM. The GPI-linked protein LY6A drives AAV-PHP.B Transport across the blood-brain barrier. Mol Ther. 2019;27(5):912–21. source
- Premisecitation
FUS-MB induces temporary BBB opening even in NHPs.
“A more localized transient disruption of BBB is accomplished by using magnetic resonance imaging-guided focused ultrasound in combination with IV infusion of microbubbles (FUS-MB) (Fig. 4b), which induce temporary BBB opening even in NHPs [134–137].”
Quote in the paperNot a substantial claim2 of 4 sources checked- cites [134] Tung YS, Marquet F, Teichert T, Ferrera V, Konofagou EE. Feasibility of noninvasive cavitation-guided blood-brain barrier opening using focused ultrasound and microbubbles in nonhuman primates. Appl Phys Lett. 2011;98(16): 163704. source
- cites [135] Choi JJ, Pernot M, Brown TR, Small SA, Konofagou EE. Spatio-temporal analysis of molecular delivery through the blood-brain barrier using focused ultrasound. Phys Med Biol. 2007;52(18):5509–30. source
The Experimental setup (section 2.3.2) describes focused ultrasound with intravenously injected microbubbles in mice, and the In vivo BBB opening study (section 4.2) reports that the opening closed within 28 hours. The paper does not establish temporary BBB opening in nonhuman primates; its experiments used mice. (LLM, conf=0.90)
Experimental — accuracy not yet measured - cites [136] Hynynen K, McDannold N, Martin H, Jolesz FA, Vykhodtseva N. The threshold for brain damage in rabbits induced by bursts of ultrasound in the presence of an ultrasound contrast agent (Optison). Ultrasound Med Biol. 2003;29(3):473–81. source
- cites [137] Xie F, Boska MD, Lof J, Uberti MG, Tsutsui JM, Porter TR. Effects of transcranial ultrasound and intravenous microbubbles on blood brain barrier permeability in a large animal model. Ultrasound Med Biol. 2008;34(12):2028–34. source
- Premisecitation
TRACER identified ten enhanced variants in C57BL/6 mice.
“Voyager Therapeutics built up another platform called TRACER (Tropism Redirection of AAV by Cell-type-specific Expression of RNA) and identified ten enhanced variants in C57BL/6 mice”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [130] Nonnenmacher M, Wang W, Child MA, Ren XQ, Huang C, Ren AZ, Tocci J, Chen Q, Bittner K, Tyson K, et al. Rapid evolution of blood-brain-barrier-penetrating AAV capsids by RNA-driven biopanning. Mol Ther Methods Clin Dev. 2021;20:366–78. source
- Premisecitation
Exosome-enveloped AAV8 or AAV9 have enhanced CNS transduction after intravenous injection.
“It is reported that exosome-enveloped AAV8 or AAV9 had enhanced CNS transduction after intravenous injection [146, 147].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [146] Gyorgy B, Fitzpatrick Z, Crommentuijn MH, Mu D, Maguire CA. Naturally enveloped AAV vectors for shielding neutralizing antibodies and robust gene delivery in vivo. Biomaterials. 2014;35(26):7598–609. source
The Results section, “Brain targeting with RVG-tagged ev-AAV after i.v. injection” (page unavailable), reports greater brain transduction after intravenous injection with RVG-tagged ev-AAV9 than with untargeted ev-AAV9. The enhancement therefore depends on a targeting peptide that the citing sentence omits. This paper does not establish the AAV8 part; the sentence also cites another source, which is not assessed here. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [147] Hudry E, Martin C, Gandhi S, Gyorgy B, Scheffer DI, Mu D, Merkel SF, Mingozzi F, Fitzpatrick Z, Dimant H, et al. Exosome-associated AAV vector as a robust and convenient neuroscience tool. Gene Ther. 2016;23(4):380–92. source
- Premisecitation
AAVrh.8 and AAVrh.10 naturally isolated from rhesus macaques have enhanced CNS tropism in adult mice following IV injection.
“Besides AAV9, naturally isolated AAVrh.8 and AAVrh.10 from rhesus macaques were validated with enhanced CNS tropism in adult mice following IV injection [125].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [125] Yang B, Li S, Wang H, Guo Y, Gessler DJ, Cao C, Su Q, Kramer J, Zhong L, Ahmed SS, et al. Global CNS transduction of adult mice by intravenously delivered rAAVrh.8 and rAAVrh.10 and nonhuman primates by rAAVrh.10. Mol Ther. 2014;22(7):1299–309. source
The Introduction reports testing rAAVrh.8 and rAAVrh.10 in adult mice after systemic delivery, and the Discussion says both were among the vectors with the strongest CNS transduction after IV injection. Our copy does not state that these vectors were naturally isolated from rhesus macaques, so it does not support that origin detail. (LLM, conf=0.82)
Experimental — accuracy not yet measured
- Premisecitation
The transcytosis approach to transverse the endothelial barrier can be hampered by addition of tannic acid or filipin, which interferes with the transport of glycosylphosphatidylinositol-anchored proteins to the apical surface of cells and afterwards restricts its function as a receptor binding to AAV capsids.
“The transcytosis approach to transverse the endothelial barrier can be hampered by addition of two chemicals, tannic acid or filipin that interferes the transport of glycosylphosphatidylinositol-anchored proteins to the apical surface of cells and afterwards restricts its function as a receptor binding to AAV capsids [116, 117].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [116] Polishchuk R, Di Pentima A, Lippincott-Schwartz J. Delivery of raft-associated, GPI-anchored proteins to the apical surface of polarized MDCK cells by a transcytotic pathway. Nat Cell Biol. 2004;6(4):297–307. source
- cites [117] Di Pasquale G, Chiorini JA. AAV transcytosis through barrier epithelia and endothelium. Mol Ther. 2006;13(3):506–16. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
- Premisecitation
During AAV production, a fraction of AAV vectors are wrapped in microvesicles/exosomes.
“During AAV production, a fraction of AAV vectors were wrapped in microvesicles/exosomes, as observed using transmission electron micrograph [145]”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [145] Maguire CA, Balaj L, Sivaraman S, Crommentuijn MH, Ericsson M, Mincheva-Nilsson L, Baranov V, Gianni D, Tannous BA, Sena-Esteves M, et al. Microvesicle-associated AAV vector as a novel gene delivery system. Mol Ther. 2012;20(5):960–71. source
- Premisecitation
TJ proteins are affected under multiple pathological conditions or by approaches causing transient disruption, compromising BBB integrity and increasing influx of substances via the paracellular pathway.
“However, the TJ proteins are reported to be affected under multiple pathological conditions or by approaches causing transient disruption, compromising the integrity of BBB and increasing influx of substances via the paracellular pathway [121, 122].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [121] Sweeney MD, Zhao Z, Montagne A, Nelson AR, Zlokovic BV. Blood-brain barrier: from physiology to disease and back. Physiol Rev. 2019;99(1):21–78. source
The Tight junctions and Pericyte-endothelial junctions passages (p. 8) link TJ-protein loss to BBB breakdown in multiple CNS disorders and explain that TJs limit paracellular diffusion. Opening the BBB (p. 33) describes approaches that transiently open the barrier, but does not say those approaches affect TJ proteins or increase influx specifically through the paracellular pathway. (LLM, conf=0.84)
Experimental — accuracy not yet measured - cites [122] Sweeney MD, Sagare AP, Zlokovic BV. Blood-brain barrier breakdown in Alzheimer disease and other neurodegenerative disorders. Nat Rev Neurol. 2018;14(3):133–50. source
The Introduction links tightly sealed endothelial contacts to low paracellular permeability and says BBB breakdown permits blood-derived substances to enter the brain. “BBB breakdown and neurodegeneration” reports loss of tight-junction proteins in neurodegenerative disorders. “How BBB breakdown affects drug delivery” mentions opening the BBB with focused ultrasound, but does not establish that such approaches transiently affect tight-junction proteins or increase influx specifically through the paracellular pathway. Page numbers were not provided in our copy. (LLM, conf=0.84)
Experimental — accuracy not yet measured
- Premisecitation
INSR, AGER, AAVR, M6PR, TFRC, and LRP2 receptors inhibit AAV transcytosis.
“whereas INSR, AGER, AAVR, M6PR, TFRC, and LRP2 receptors participated in inhibition of AAV transcytosis.”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [120] Song R, Pekrun K, Khan TA, Zhang F, Pasca SP, Kay MA. Selection of rAAV vectors that cross the human blood-brain barrier and target the central nervous system using a transwell model. Mol Ther Methods Clin Dev. 2022;27:73–88. source
The Results section says INSR, AGER, AAVR, M6PR, TFRC, and LRP2 may participate in inhibiting rAAV transcytosis in the transwell model: knocking them down increased flowthrough for two or more rAAVs. The citing sentence presents their participation as established, whereas the paper qualifies it as a possibility. (LLM, conf=0.86)
Experimental — accuracy not yet measured
- Findingown data
In a mouse model of traumatic brain injury, BBB permeability breaks down with increased influx of high molecular weight Dextran (155 kDa).
“Using mouse model of traumatic brain injury, our laboratory showed the breakdown of BBB permeability with increased influx of high molecular weight Dextran (155 kDa).”
Quote in the paperNot a substantial claim - Premisecitation
For CNS diseases, a lack of efficient gene delivery vectors was a major challenge before the introduction of AAV.
“For central nervous system (CNS) diseases, a lack of efficient gene delivery vectors was a major challenge before the introduction of AAV [7].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [7] Zhu D, Schieferecke AJ, Lopez PA, Schaffer DV. Adeno-associated virus vector for central nervous system gene therapy. Trends Mol Med. 2021;27(6):524–37. source
- Interpretationnone given
Use of cell- or tissue-specific promoters can regulate precisely localized gene expression to minimize off-target effects and related immune-mediated toxicity.
“On the contrary, the use of cell- or tissue-specific promoter can regulate precisely localized gene expression to minimize off-target effects and related immune-mediated toxicity.”
Quote in the paperSubstantial claim - Premisecitation
The obstacle of ssAAV complementary strand synthesis has been circumvented by the development of self-complementary AAV (scAAV).
“However, this obstacle has been circumvented by the development of self-complementary AAV (scAAV) [10, 11].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [10] McCarty DM, Fu H, Monahan PE, Toulson CE, Naik P, Samulski RJ. Adeno-associated virus terminal repeat (TR) mutant generates self-complementary vectors to overcome the rate-limiting step to transduction in vivo. Gene Ther. 2003;10(26):2112–8. source
- cites [11] McCarty DM, Monahan PE, Samulski RJ. Self-complementary recombinant adeno-associated virus (scAAV) vectors promote efficient transduction independently of DNA synthesis. Gene Ther. 2001;8(16):1248–54. source
- Premisereasoning
scAAV is capable of a five- to 140-fold increase in transduction over ssAAV.
“scAAV is capable of five- to 140-fold increase in transduction over ssAAV.”
Quote in the paperSubstantial claim - Interpretationcitation
scAAV is associated with increased immunogenicity.
“Notably, scAAV heightens innate immune response via enhanced activation of the TLR9/MyD88 signaling in a dose-dependent manner with induction of IL-6, TNF-α, and other proinflammatory cytokines [13, 14], suggesting increased immunogenicity associated with scAAV.”
Quote in the paperSubstantial claim - Premisecitation
The increased efficiency of scAAV is compensated for by the loss of half the packaging capacity (2.4 kb of scAAV vs. 4.8 kb of ssAAV).
“The increased efficiency is compensated for the loss of half the packaging capacity (2.4 kb of scAAV vs. 4.8 kb of ssAAV) [12].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [12] Wu J, Zhao W, Zhong L, Han Z, Li B, Ma W, Weigel-Kelley KA, Warrington KH, Srivastava A. Self-complementary recombinant adeno-associated viral vectors: packaging capacity and the role of rep proteins in vector purity. Hum Gene Ther. 2007;18(2):171–82. source
- Premisecitation
The BBB is an assembly of vascular endothelial cells, astrocytes, pericytes, and extracellular matrix, tightly tethered together via tight junction proteins.
“The BBB is an assembly of vascular endothelial cells, astrocyte, pericytes and extracellular matrix, and tightly tethered together via tight junction proteins [114].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [114] Abbott NJ, Patabendige AA, Dolman DE, Yusof SR, Begley DJ. Structure and function of the blood-brain barrier. Neurobiol Dis. 2010;37(1):13–25. source
- Premisecitation
WPRE was previously reported to harbor potential oncogenic activity that may hinder its translation into clinical practices.
“Notably, WPRE was previously reported to harbor potential oncogenic activity that may hinder its translation into clinical practices [30].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [30] Kingsman SM, Mitrophanous K, Olsen JC. Potential oncogene activity of the woodchuck hepatitis post-transcriptional regulatory element (WPRE). Gene Ther. 2005;12(1):3–4. source
- Premisecitation
WPRE is often included in AAV cassettes to improve viral titer and transduction efficiency via stabilizing mRNA and regulating transcriptional termination.
“The woodchuck hepatitis post-transcriptional regulatory element (WPRE) is often included in AAV cassettes to improve viral titer and transduction efficiency via stabilizing mRNA and regulating transcriptional termination [26, 27].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [26] Loeb JE, Cordier WS, Harris ME, Weitzman MD, Hope TJ. Enhanced expression of transgenes from adeno-associated virus vectors with the woodchuck hepatitis virus posttranscriptional regulatory element: implications for gene therapy. Hum Gene Ther. 1999;10(14):2295–305. source
- cites [27] Higashimoto T, Urbinati F, Perumbeti A, Jiang G, Zarzuela A, Chang LJ, Kohn DB, Malik P. The woodchuck hepatitis virus post-transcriptional regulatory element reduces readthrough transcription from retroviral vectors. Gene Ther. 2007;14(17):1298–304. source
- Premisecitation
Endogenous tissue-specific miRNA expression is an effective tool to restrict foreign DNA expression in undesired tissues.
“Endogenous tissue-specific microRNA (miRNA) expression is an effective tool to restrict foreign DNA expression in undesired tissues.”
Quote in the paperSubstantial claim - Premisecitation
Four tandem complementary copies of the hematopoietic-specific miR-142-3p sequence inserted downstream of a GFP reporter significantly prevented transgene expression in hematopoietic cells, even after superinfection with 30 copies of viruses.
“For example, four tandem complimentary copies of the hematopoietic-specific miR-142-3p sequence were inserted into the downstream of a green fluorescent protein (GFP) reporter. It significantly prevented transgene expression in hematopoietic cells, even after the cells were superinfected with 30 copies of viruses [31].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [31] Brown BD, Venneri MA, Zingale A, Sergi Sergi L, Naldini L. Endogenous microRNA regulation suppresses transgene expression in hematopoietic lineages and enables stable gene transfer. Nat Med. 2006;12(5):585–91. source
- Premisenone given
AAVs exhibit high tropism towards liver tissue.
“AAVs exhibit high tropism towards liver tissue.”
Quote in the paperNot a substantial claim - Premisecitation
AAV1 and AAV5 display higher infiltrative transduction efficiency than AAV2 in all regions injected within the brain, mainly targeting neurons.
“Besides, AAV1 and AAV5 display higher infiltrative transduction efficiency than AAV2 in all regions injected within the brain, mainly targeting the neurons [47].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [47] Burger C, Gorbatyuk OS, Velardo MJ, Peden CS, Williams P, Zolotukhin S, Reier PJ, Mandel RJ, Muzyczka N. Recombinant AAV viral vectors pseudotyped with viral capsids from serotypes 1, 2, and 5 display differential efficiency and cell tropism after delivery to different regions of the central nervous system. Mol Ther. 2004;10(2):302–17. source
- Premisecitation
IM delivery of AAV6 showed about 50% transduction of spinal motor neurons in NHPs.
“Moreover, IM delivery of AAV6 showed about 50% transduction of spinal motor neurons in NHPs [105].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [105] Towne C, Schneider BL, Kieran D, Redmond DE Jr, Aebischer P. Efficient transduction of non-human primate motor neurons after intramuscular delivery of recombinant AAV serotype 6. Gene Ther. 2010;17(1):141–6. source
- Premiseown data
The authors reported two novel BBB penetrant AAVs, AAV.CPP.16 and AAV.CPP.21, by displaying cell-penetrating peptides into the VR-VIII loop of the AAV9 capsid.
“Recently, we reported two novel BBB penetrant AAVs, namely AAV.CPP.16 and AAV.CPP.21, by adopting a rational design approach of displaying cell-penetrating peptides (CPPs) into VR-VIII loop of the AAV9 capsid.”
Quote in the paperSubstantial claim - Premisenone given
Carvalho applied in silico ancestral sequence reconstruction (ASR) to predict the amino acid sequence of putative ancestral AAV capsid monomers using maximum likelihood methods from 75 isolates of AAV.
“Carvalho applied in silico ancestral sequence reconstruction (ASR) method to predict the amino acid sequence of putative ancestral AAV capsid monomers using maximum likelihood (ML) methods from 75 isolates of AAV.”
Quote in the paperNot a substantial claim - Premisecitation
The commonly used routes for CNS gene transfer are intraparenchymal delivery, intracerebrospinal fluid delivery, intravenous delivery, and intramuscular delivery.
“The commonly used routes for CNS gene transfer are intraparenchymal delivery (IP), intracerebrospinal fluid (intra-CSF) delivery, intravenous (IV) delivery, and intramuscular (IM) delivery [8].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [8] Deverman BE, Ravina BM, Bankiewicz KS, Paul SM, Sah DWY. Gene therapy for neurological disorders: progress and prospects. Nat Rev Drug Discov. 2018;17(9):641–59. source
- Premisecitation
The ICM route is injected into the subarachnoid space between the cerebellum and the dorsal side of the medulla oblongata, reaching a broad and balanced transduction in both brain and spinal cord than other CSF infusion.
“Another intra-CSF delivery, ICM route, is injected into the subarachnoid space between the cerebellum and the dorsal side of the medulla oblongata, reaching a broad and balance transduction in both of brain and spinal cord than other CSF infusion [94].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [94] Marchi PM, Marrone L, Azzouz M. Delivery of therapeutic AAV9 vectors via cisterna magna to treat neurological disorders. Trends Mol Med. 2022;28(1):79–80. source
- Premisecitation
This method identified the new AAV Anc80L65 from a generated capsid pool with 2048 variants.
“This method identified the new AAV, namely Anc80L65, from generated capsid pool with 2048 variants.”
Quote in the paperNot a substantial claim - Interpretationreasoning
Limited efficiency or specificity of naturally discovered AAV, or high prevalence of neutralizing antibodies in the human population, has inspired the generation of novel AAV capsids to better fit clinical demands through rational design, directed evolution, and in silico design.
“However, either limited efficiency or specificity of naturally discovered AAV, or high prevalence of neutralizing antibodies (NAbs) in human population has greatly inspired the generation of novel AAV capsid to better fit clinical demands through laboratory-driven approaches, such as rational design, direct evolution and in silico design.”
Quote in the paperSubstantial claim - Premisecitation
Introducing the Minute virus of mice (MVM) intron between promoter and transgene increases transgene expression 80-fold in liver cells compared to intron-null AAV.
“Strikingly, introducing the Minute virus of mice (MVM) intron between promoter and transgene has been reported to increase 80-fold of transgene expression in liver cells compared to intron-null AAV [24].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [24] Wu Z, Sun J, Zhang T, Yin C, Yin F, Van Dyke T, Samulski RJ, Monahan PE. Optimization of self-complementary AAV vectors for liver-directed expression results in sustained correction of hemophilia B at low vector dose. Mol Ther. 2008;16(2):280–9. source
- Premisecitation
AAVHSCs, like AAV9, are classified into Clade F.
“Like AAV9, they are classified into Clade F”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [128] Smith LJ, Ul-Hasan T, Carvaines SK, Van Vliet K, Yang E, Wong KK Jr, Agbandje-McKenna M, Chatterjee S. Gene transfer properties and structural modeling of human stem cell-derived AAV. Mol Ther. 2014;22(9):1625–34. source
- Interpretationcitation
Transient opening of the BBB can be utilized to facilitate delivery of viral vectors to the CNS.
“Transient opening of the BBB can be utilized to facilitate the delivery of viral vectors to the CNS”
Quote in the paperSubstantial claim - Premisecitation
Induction of glutamic acid decarboxylase enzyme as a neuromodulator can evoke synthesis of GABA to perform inhibitory modulation of neuronal activities in the subthalamic nucleus.
“Induction of glutamic acid decarboxylase enzyme as a neuromodulator that can evoke the synthesis of a neurotransmitter Gamma-aminobutyric acid (GABA) to perform inhibitory modulation of neuronal activities in the subthalamic nucleus [162, 163].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [162] Feigin A, Kaplitt MG, Tang C, Lin T, Mattis P, Dhawan V, During MJ, Eidelberg D. Modulation of metabolic brain networks after subthalamic gene therapy for Parkinson’s disease. Proc Natl Acad Sci USA. 2007;104(49):19559–64. source
- cites [163] Luo J, Kaplitt MG, Fitzsimons HL, Zuzga DS, Liu Y, Oshinsky ML, During MJ. Subthalamic GAD gene therapy in a Parkinson’s disease rat model. Science. 2002;298(5592):425–9. source
- Interpretationreasoning
The ability to transverse the BBB may be a feature of Clade-F AAVs.
“supporting the claim that the ability to transverse the BBB may be a feature of Clade-F AAVs”
Quote in the paperNot a substantial claim - Premisecitation
AAV2-mediated RNAi silencing of the HTT gene in a preclinical study was safe without induction of motor deficits, neuronal degeneration, or immune response.
“A preclinical study for HD applied AAV2-mediated RNAi silencing of HTT gene and proved to be safe without induction of motor deficits, neuronal degeneration, or immune response [167].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [167] McBride JL, Pitzer MR, Boudreau RL, Dufour B, Hobbs T, Ojeda SR, Davidson BL. Preclinical safety of RNAi-mediated HTT suppression in the rhesus macaque as a potential therapy for Huntington’s disease. Mol Ther. 2011;19(12):2152–62. source
- Premisecitation
AAV9-based Zolgensma for SMA has been established as the first FDA-approved drug for systemic gene therapy in CNS diseases.
“With AAV9’s inherent ability to target motor neurons, AAV9-based Zolgensma® for the treatment of SMA has been established as the first FDA-approved drug for systemic gene therapy in CNS diseases [171].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [171] Mendell JR, Al-Zaidy S, Shell R, Arnold WD, Rodino-Klapac LR, Prior TW, Lowes L, Alfano L, Berry K, Church K, et al. Single-dose gene-replacement therapy for spinal muscular atrophy. N Engl J Med. 2017;377(18):1713–22. source
- Premisecitation
FUS waves induce oscillation of intravenously injected microbubbles in the desired brain region, leading to transient BBB compromise by physically disrupting tight junctions between endothelial cells.
“The FUS waves induce oscillation of intravenously injected microbubbles in the desired brain region, leading to transient BBB compromise by physically disrupting tight junctions between endothelial cells [138, 139].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [138] Fan CH, Lin CY, Liu HL, Yeh CK. Ultrasound targeted CNS gene delivery for Parkinson’s disease treatment. J Control Release. 2017;261:246–62. source
- cites [139] Hynynen K, McDannold N, Sheikov NA, Jolesz FA, Vykhodtseva N. Local and reversible blood-brain barrier disruption by noninvasive focused ultrasound at frequencies suitable for trans-skull sonications. Neuroimage. 2005;24(1):12–20. source
- Premisenone given
The dosage set by Zolgensma is 1.1 × 10^14 vg/kg.
“the dosage set by Zolgensma is very high (1.1 × 1014 vg/kg)”
Quote in the paperSubstantial claim - Premisecitation
Patient fatalities have been reported due to acute liver failure after intravenous delivery of Zolgensma.
“Still, patient fatalities have been reported due to acute liver failure after intravenous delivery of Zolgensma [172].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [172] Philippidis A. Novartis confirms deaths of two patients treated with gene therapy zolgensma. Hum Gene Ther. 2022;33(17–18):842–4. source
- Premisecitation
Intravenous infusion of 25% mannitol solution 15-20 min before scAAV2 vector administration can increase up to tenfold vector dispersion in mouse brain.
“Fu and colleagues first report that intravenous infusion of 25% mannitol solution 15–20 min before scAAV2 vector administration can increase up to tenfold of vector dispersion in mouse brain.”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [131] Ikeda M, Bhattacharjee AK, Kondoh T, Nagashima T, Tamaki N. Synergistic effect of cold mannitol and Na(+)/Ca(2+) exchange blocker on blood-brain barrier opening. Biochem Biophys Res Commun. 2002;291(3):669–74. source
- cites [132] Rapoport SI. Advances in osmotic opening of the blood-brain barrier to enhance CNS chemotherapy. Expert Opin Investig Drugs. 2001;10(10):1809–18. source
- Premisecitation
Accumulation of β-amyloid compromises BBB permeability by decreasing expression of TJ proteins including claudin-5, occludin, and ZO-1.
“Accumulation of the β-amyloid, a key characteristic of AD, was demonstrated to compromise BBB permeability by decreasing expression of TJ proteins, including claudin-5, occluding and ZO-1 [123].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [123] Carrano A, Hoozemans JJ, van der Vies SM, van Horssen J, de Vries HE, Rozemuller AJ. Neuroinflammation and blood-brain barrier changes in capillary amyloid angiopathy. Neurodegener Dis. 2012;10(1–4):329–31. source
- Classified as probably not a substantial claim. 17
- May combine two claims. 54
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationThe most commonly used ubiquitous promoters include CAG, CBA, and CMV promoters.
“Among the most commonly used ubiquitous promoters are cytomegalovirus immediate early enhancer/chicken β actin/rabbit β-globin (CAG) promoter, the chicken beta-acting (CBA) promoter and the cytomegalovirus (CMV) promoter [18].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [18] Au HKE, Isalan M, Mielcarek M. Gene therapy advances: a meta-analysis of AAV usage in clinical settings. Front Med (Lausanne). 2021;8: 809118. source
May combine two claims.
PremisecitationIntron elements are generally positioned downstream of a promoter and enhance gene expression by improving mRNA stability and facilitating mRNA export to the cytoplasm.
“Intron element is generally positioned downstream of a promoter and enhances gene expression by improving mRNA stability and facilitating mRNA export to the cytoplasm [23].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [23] Reed R, Hurt E. A conserved mRNA export machinery coupled to pre-mRNA splicing. Cell. 2002;108(4):523–31. source
The passage describing the splicing-coupled export model (labelled Abstract; page not supplied) says that splicing recruits export factors and that the spliced mRNA moves to the cytoplasm. It does not say that intron elements are generally positioned downstream of a promoter or that they enhance gene expression by improving mRNA stability. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationIn silico design approach to reconstruct and discover new capsid was first reported in 2015.
“With technological advancements of computational modeling and machine learning, an in silico design approach to reconstruct and discover new capsid was first reported in 2015 [69, 70].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [69] Zinn E, Pacouret S, Khaychuk V, Turunen HT, Carvalho LS, Andres-Mateos E, Shah S, Shelke R, Maurer AC, Plovie E, et al. In silico reconstruction of the viral evolutionary lineage yields a potent gene therapy vector. Cell Rep. 2015;12(6):1056–68. source
The Discussion (page unavailable) says the authors inferred ancestral AAV capsid sequences through in silico modeling and identified a new AAV-like particle, Anc80L65. It does not establish that this approach was first reported in 2015; it describes an earlier viral-ancestor reconstruction as a methodological precedent. (LLM, conf=0.86)
Experimental — accuracy not yet measured - cites [70] Santiago-Ortiz J, Ojala DS, Westesson O, Weinstein JR, Wong SY, Steinsapir A, Kumar S, Holmes I, Schaffer DV. AAV ancestral reconstruction library enables selection of broadly infectious viral variants. Gene Ther. 2015;22(12):934–46. source
The Introduction describes reconstructing the AAV capsid and selecting new, broadly infectious variants, supporting the core description of the approach. It also describes earlier ancestral reconstructions of viral proteins, so this paper does not establish that such an approach was first reported in 2015. The passages have no page numbers in our copy. (LLM, conf=0.85)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationGradinaru's lab developed the CREATE platform and identified PhP.B and PhP.eB, which showed overwhelming superiority of CNS transduction after systemic delivery in some mouse strains but failed to translate into NHPs.
“Based on such strategy, Gradinaru’s lab developed Cre recombination-based AAV targeted evolution (CREATE) platform and successfully identified PhP.B and PhP.eB [64, 65], showing overwhelming superiority of CNS transduction after systemic delivery in some mouse strains but unfortunately failed to translate into NHPs [66, 67].”
Quote in the paperNot a substantial claim3 of 4 sources checked- cites [64] Deverman BE, Pravdo PL, Simpson BP, Kumar SR, Chan KY, Banerjee A, Wu WL, Yang B, Huber N, Pasca SP, et al. Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain. Nat Biotechnol. 2016;34(2):204–9. source
The paper’s Abstract describes CREATE and identifies AAV-PHP.B, reporting at least 40-fold greater CNS gene transfer than AAV9 after intravenous injection in adult mice. It does not identify AAV-PHP.eB; the citing sentence pairs this paper with another citation for the variants. The NHP translation claim is attached to separate citations [66, 67], not to this source. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites [65] Chan KY, Jang MJ, Yoo BB, Greenbaum A, Ravi N, Wu WL, Sanchez-Guardado L, Lois C, Mazmanian SK, Deverman BE, et al. Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems. Nat Neurosci. 2017;20(8):1172–9. source
- cites [66] Hordeaux J, Wang Q, Katz N, Buza EL, Bell P, Wilson JM. The neurotropic properties of AAV-PHPB are limited to C57BL/6J mice. Mol Ther. 2018;26(3):664–8. source
The Abstract and Main Text report that intravenous PHP.B produced much higher CNS transduction in C57BL/6J mice than AAV9, but that this advantage was not found in BALB/cJ mice or nonhuman primates. The source does not establish the same mouse-strain and NHP findings for PHP.eB. The CREATE-platform identification is attached to other citations in the citing sentence. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [67] Matsuzaki Y, Konno A, Mochizuki R, Shinohara Y, Nitta K, Okada Y, Hirai H. Intravenous administration of the adeno-associated virus-PHP.B capsid fails to upregulate transduction efficiency in the marmoset brain. Neurosci Lett. 2018;665:182–8. source
May combine two claims.
PremisecitationLater, they optimized the CREATE platform by introducing a peptide library into the surface-exposed AA455 loop of PhP.eB capsid and obtained AAV.CAP-B10 with enhanced CNS tropism and simultaneously de-targeted from liver expression in both mice and marmosets.
“Later, they optimized the CREATE platform by introducing peptide library into the surface-exposed AA455 loop of PhP.eB capsid and obtained a variant AAV.CAP-B10 with enhanced CNS tropism and simultaneously de-targeted from liver expression in both mice and marmosets [68].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [68] Goertsen D, Flytzanis NC, Goeden N, Chuapoco MR, Cummins A, Chen Y, Fan Y, Zhang Q, Sharma J, Duan Y, et al. AAV capsid variants with brain-wide transgene expression and decreased liver targeting after intravenous delivery in mouse and marmoset. Nat Neurosci. 2022;25(1):106–15. source
May combine two claims.
PremisecitationIncorporation of 5 copies of miR-122 target sequences has shown enhanced inhibitory effects over 3 copies in the liver of ICR mice, while without any significant change in transduction efficiency in 293 T cells.
“Incorporation of 5 copies of miR-122 target sequences has shown enhanced inhibitory effects over 3 copies in the liver of ICR mice, while without any significant change in transduction efficiency in 293 T cells [33].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [33] Qiao C, Yuan Z, Li J, He B, Zheng H, Mayer C, Li J, Xiao X. Liver-specific microRNA-122 target sequences incorporated in AAV vectors efficiently inhibits transgene expression in the liver. Gene Ther. 2011;18(4):403–10. source
The Results report greater reductions in liver luciferase expression with five miR-122 target copies than with three after plasmid injection; the Methods identify the mice used for hydrodynamic injection as ICR mice (pages unavailable). The Results also report no difference in luciferase activity in transfected 293 cells, but the paper does not identify them as 293T cells or measure transduction efficiency in that comparison. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationCompared to systemic delivery, the intra-CSF route performs a more invasive procedure, but attenuates exposure to pre-existing neutralizing antibodies from the vascular system and avoids the risk of liver toxicity after intravenous administration of high doses.
“While comparing to systemic delivery, intra-CSF route performs in a more invasive procedure, but on the other hand, attenuates the exposure to pre-existing neutralizing antibodies from vascular system and avoids the risk of liver toxicity after intravenous administration of high doses [87].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [87] Lu CT, Zhao YZ, Wong HL, Cai J, Peng L, Tian XQ. Current approaches to enhance CNS delivery of drugs across the brain barriers. Int J Nanomedicine. 2014;9:2241–57. source
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
InterpretationcitationAAV7 induces a stronger anti-AAV immune response in the hemophilia B population than AAV8, which makes AAV8 suitable for hemophilia B patients in clinical trials.
“Notably, AAV7 induces stronger anti-AAV immune response in the hemophilia B population than AAV8 [49], which makes AAV8 suitable for hemophilia B patients in clinical trials (Identifier: NCT01620801 and NCT00979238).”
Quote in the paperNot a substantial claim1 of 3 sources checked- cites [49] Shao W, Pei X, Cui C, Askew C, Dobbins A, Chen X, Abajas YL, Gerber DA, Samulski RJ, Nichols TC, et al. Superior human hepatocyte transduction with adeno-associated virus vector serotype 7. Gene Ther. 2019;26(12):504–14. source
The Results section (page unavailable) reports neutralizing antibodies to AAV7 in all 26 hemophilia patients tested, versus no detectable antibodies to AAV8 in six. But the study measured pre-existing antibodies, not whether AAV7 induces a stronger immune response, and it does not conclude that this comparison makes AAV8 suitable for clinical trials. (LLM, conf=0.87)
Experimental — accuracy not yet measured - cites NCT01620801
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites NCT00979238
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
May combine two claims.
PremisecitationAAV9 binds to terminal galactose and shows efficient transduction in CNS, eye, cardiac and skeletal muscle, and liver.
“Another validated vector with broad tropism is AAV9, binding to terminal galactose and showing efficient transduction in CNS, eye, cardiac and skeletal muscle, and liver [50–53].”
Quote in the paperNot a substantial claim1 of 4 sources checked- cites [50] Gray SJ, Matagne V, Bachaboina L, Yadav S, Ojeda SR, Samulski RJ. Preclinical differences of intravascular AAV9 delivery to neurons and glia: a comparative study of adult mice and nonhuman primates. Mol Ther. 2011;19(6):1058–69. source
- cites [51] Bell CL, Vandenberghe LH, Bell P, Limberis MP, Gao GP, Van Vliet K, Agbandje-McKenna M, Wilson JM. The AAV9 receptor and its modification to improve in vivo lung gene transfer in mice. J Clin Invest. 2011;121(6):2427–35. source
The Discussion identifies terminal β-galactose linkages as mediating AAV9 binding, and the Results report efficient liver transduction and efficient cardiac and skeletal muscle transduction at higher doses. The Results describe CNS transduction after intravenous injection as detectable, and the Discussion calls neuronal transduction limited—not efficient. The passages do not establish efficient eye transduction by AAV9. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [52] Fechner H, Sipo I, Westermann D, Pinkert S, Wang X, Suckau L, Kurreck J, Zeichhardt H, Muller O, Vetter R, et al. Cardiac-targeted RNA interference mediated by an AAV9 vector improves cardiac function in coxsackievirus B3 cardiomyopathy. J Mol Med (Berl). 2008;86(9):987–97. source
- cites [53] Pacak CA, Mah CS, Thattaliyath BD, Conlon TJ, Lewis MA, Cloutier DE, Zolotukhin I, Tarantal AF, Byrne BJ. Recombinant adeno-associated virus serotype 9 leads to preferential cardiac transduction in vivo. Circ Res. 2006;99(4):e3-9. source
May combine two claims.
PremisecitationLater studies characterized Anc80L65, demonstrating great transduction efficiency for retinas, inner ear, and notable expression in the CNS after systemic gene transfer.
“Later, more studies further characterized the vector Anc80L65, demonstrating great transduction efficiency for retinas [71], inner ear [72], and even notable expression in the CNS after systemic gene transfer [73].”
Quote in the paperNot a substantial claim3 of 3 sources checked- cites [71] Carvalho LS, Xiao R, Wassmer SJ, Langsdorf A, Zinn E, Pacouret S, Shah S, Comander JI, Kim LA, Lim L, et al. Synthetic adeno-associated viral vector efficiently targets mouse and nonhuman primate retina in vivo. Hum Gene Ther. 2018;29(7):771–84. source
- cites [72] Landegger LD, Pan B, Askew C, Wassmer SJ, Gluck SD, Galvin A, Taylor R, Forge A, Stankovic KM, Holt JR, et al. A synthetic AAV vector enables safe and efficient gene transfer to the mammalian inner ear. Nat Biotechnol. 2017;35(3):280–4. source
- cites [73] Hudry E, Andres-Mateos E, Lerner EP, Volak A, Cohen O, Hyman BT, Maguire CA, Vandenberghe LH. Efficient gene transfer to the central nervous system by single-stranded Anc80L65. Mol Ther Methods Clin Dev. 2018;10:197–209. source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAddition of SV40 intron confers about twofold enhancement of AAV transgene expression in lung carcinoma cells.
“Moreover, addition of SV40 intron confers about twofold enhancement of AAV transgene expression in lung carcinoma cells [25].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [25] Ostedgaard LS, Rokhlina T, Karp PH, Lashmit P, Afione S, Schmidt M, Zabner J, Stinski MF, Chiorini JA, Welsh MJ. A shortened adeno-associated virus expression cassette for CFTR gene transfer to cystic fibrosis airway epithelia. Proc Natl Acad Sci USA. 2005;102(8):2952–7. source
The Results and Discussion report increased β-gal activity with an SV40 intron in a full-length promoter construct and with the 113CMV promoter, but no increase with the 173CMV promoter. The paper does not state an approximately twofold increase, and it says the intron was not included in the AAV expression cassette. Materials and Methods describe the intron tests as plasmid-transfection experiments in cell lines, rather than tests of intron-containing AAV vectors. (LLM, conf=0.88)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationCompared to IT route, ICV administration accesses the ventricles requiring an invasive stereotaxic surgery but has been demonstrated to be safe in clinical trials and achieve widespread AAV distribution in the brain.
“Comparing to IT route, ICV administration accesses the ventricles requiring an invasive stereotaxic surgery but has been demonstrated to be safe in clinical trials and achieve widespread AAV distribution in the brain [93].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [93] Duma C, Kopyov O, Kopyov A, Berman M, Lander E, Elam M, Arata M, Weiland D, Cannell R, Caraway C, et al. Human intracerebroventricular (ICV) injection of autologous, non-engineered, adipose-derived stromal vascular fraction (ADSVF) for neurodegenerative disorders: results of a 3-year phase 1 study of 113 injections in 31 patients. Mol Biol Rep. 2019;46(5):5257–72. source
The Ommaya reservoir implantation technique describes image-guided surgery to place a ventricular catheter, and the Safety section reports on ICV injections in a phase 1 trial. But the trial administered ADSVF cells, not AAV, and the paper does not demonstrate widespread AAV distribution in the brain. It also notes that patients with an existing VP shunt did not require reservoir implantation. (LLM, conf=0.90)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationAAV-mediated gene therapy using IM delivery is minimally invasive in local muscle tissue and undergoes a cascade intracellular event for retrograde axonal trafficking into neuronal soma.
“AAV-mediated gene therapy using IM delivery is minimally invasive in local muscle tissue and undergoes a cascade intracellular event for retrograde axonal trafficking into neuronal soma [99, 100].”
Quote in the paperSubstantial claim2 of 2 sources checked- cites [99] Tosolini AP, Sleigh JN. Intramuscular delivery of gene therapy for targeting the nervous system. Front Mol Neurosci. 2020;13:129. source
- cites [100] Chen Z, Fan G, Li A, Yuan J, Xu T. rAAV2-retro enables extensive and high-efficient transduction of lower motor neurons following intramuscular injection. Mol Ther Methods Clin Dev. 2020;17:21–33. source
The Discussion (page unavailable) describes intramuscular administration as minimally invasive and says rAAV can use axonal transport to travel toward lower motor neurons. It does not describe a cascade of intracellular events leading to the neuronal soma; it also reports cerebrospinal-fluid spread as a pathway for the extensive transduction observed in this study. (LLM, conf=0.83)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationA novel variant AAV-TT derived from AAV2 revealed strong neurotropism and exceeded transduction of AAV9 and AAVrh10 in mice, even correcting neurological deficits in the mouse model of MPSIIIC.
“It is noted a novel variant AAV-TT derived from AAV2 revealed strong neurotropism and exceeded transduction of AAV9 and AAVrh10 in mice, even correcting neurological deficits in the mouse model of MPSIIIC [61].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [61] Tordo J, O’Leary C, Antunes A, Palomar N, Aldrin-Kirk P, Basche M, Bennett A, D’Souza Z, Gleitz H, Godwin A, et al. A novel adeno-associated virus capsid with enhanced neurotropism corrects a lysosomal transmembrane enzyme deficiency. Brain. 2018;141(7):2014–31. source
May combine two claims.
PremisecitationAlbright and colleagues identified essential 8 amino acid residues on the AAVrh.10 capsid that mediated transport across the BBB and grafted them onto AAV1 capsid, enabling the new chimeric capsid to cross the BBB and preferentially transduce neurons in C57/Bl6 mice.
“Moreover, Albright and colleagues identified the essential 8 amino acid residues on the AAVrh.10 capsid that mediated transport across the BBB and grafted onto AAV1 capsid, enabling the new chimeric capsid to cross the BBB and preferentially transduced neurons in C57/Bl6 mice [58].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [58] Albright BH, Storey CM, Murlidharan G, Castellanos Rivera RM, Berry GE, Madigan VJ, Asokan A. Mapping the structural determinants required for AAVrh.10 transport across the blood-brain barrier. Mol Ther. 2018;26(2):510–23. source
May combine two claims.
PremisecitationRamirez and colleagues demonstrated that AAV9 preferably crossed brain-endothelial barriers through an active, cell-mediated process, while little transduced endothelial cells.
“Ramirez and colleagues [115] demonstrated that AAV9 preferably crossed brain-endothelial barriers through an active, cell-mediated process, while little transduced endothelial cells.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [115] Merkel SF, Andrews AM, Lutton EM, Mu D, Hudry E, Hyman BT, Maguire CA, Ramirez SH. Trafficking of adeno-associated virus vectors across a model of the blood-brain barrier; a comparative study of transcytosis and transduction using primary human brain endothelial cells. J Neurochem. 2017;140(2):216–30. source
May combine two claims.
PremisecitationAAV-mediated expression of AADC increases dopamine production and confers benefits to some PD patients with moderate motor improvement.
“Increasing dopamine production by AAV-mediated expression of the L-aromatic acid decarboxylase (AADC) enzyme, conferring benefits to some PD patients with moderately motor improvement [161]”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [161] Christine CW, Richardson RM, Van Laar AD, Thompson ME, Fine EM, Khwaja OS, Li C, Liang GS, Meier A, Roberts EW, et al. Safety of AADC gene therapy for moderately advanced Parkinson disease: three-year outcomes from the PD-1101 trial. Neurology. 2022;98(1):e40–50. source
The introduction describes VY-AADC01 as designed to increase dopamine production, but says localized production is expected rather than reporting a direct measurement of increased dopamine. The Results report increased AADC activity and improved motor scores in participants with moderately advanced PD; the Discussion characterizes clinical benefit as potential. The claim overstates the certainty of increased dopamine production and benefit. (LLM, conf=0.85)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationOptimal transduction of AAV2 vectors in the brain was achieved by IV injection of AAV 8 min after mannitol administration; delivery less than 5 min or 10 min after mannitol infusion was ten times less efficient.
“a study showed that the optimal transduction of AAV2 vectors in the brain was achieved by IV injection of AAV 8 min after mannitol administration; delivery of the vector less than 5 min or 10 min after mannitol infusion was ten times less efficient.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [133] McCarty DM, DiRosario J, Gulaid K, Muenzer J, Fu H. Mannitol-facilitated CNS entry of rAAV2 vector significantly delayed the neurological disease progression in MPS IIIB mice. Gene Ther. 2009;16(11):1340–52. source
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationTHR peptide increased AAV8 transcytosis in hCMEC/D3 endothelial cells and delivered more virion across the BBB to the brain parenchyma.
“further mechanistic study revealed the THR peptide increased the AAV8 transcytosis in hCMEC/D3 endothelial cells and delivered more virion across the BBB to the brain parenchyma [143].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [143] Zhang X, He T, Chai Z, Samulski RJ, Li C. Blood-brain barrier shuttle peptides enhance AAV transduction in the brain after systemic administration. Biomaterials. 2018;176:71–83. source
May combine two claims.
PremisecitationAAVrh.8 better transduces neurons, astrocytes, and oligodendrocytes and has low peripheral tropism compared to AAV9 and AAVrh.10.
“AAVrh.8 was shown to better transduce neurons, astrocytes, and oligodendrocytes, while with low peripheral tropism compared to AAV9 and AAVrh.10 [126, 127].”
Quote in the paperNot a substantial claim2 of 2 sources checked- cites [126] Tanguy Y, Biferi MG, Besse A, Astord S, Cohen-Tannoudji M, Marais T, Barkats M. Systemic AAVrh10 provides higher transgene expression than AAV9 in the brain and the spinal cord of neonatal mice. Front Mol Neurosci. 2015;8:36. source
The Materials and methods section describes vectors of serotypes AAV9 and AAVrh10, not AAVrh.8. The Results compare those two serotypes in the peripheral nervous system and in the heart and liver, but provide no AAVrh.8 comparison. A search for AAVrh.8/AAVrh8 found no passage addressing its cell transduction or peripheral tropism. (LLM, conf=0.77)
Experimental — accuracy not yet measured - cites [127] Zhang H, Yang B, Mu X, Ahmed SS, Su Q, He R, Wang H, Mueller C, Sena-Esteves M, Brown R, et al. Several rAAV vectors efficiently cross the blood-brain barrier and transduce neurons and astrocytes in the neonatal mouse central nervous system. Mol Ther. 2011;19(8):1440–8. source
The Discussion (page unavailable) identifies rAAVrh.10, rAAVrh.39, rAAVrh.43, and rAAV9 as effective CNS vectors, but does not assess AAVrh.8. Searches for AAVrh.8, oligodendrocytes, and peripheral tropism found no passage supporting the claimed comparison. (LLM, conf=0.76)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationLY6A is responsible for specific engagement to the 7-mer insertion of PHP.B and PHP.eB and for transcytosis at the BBB.
“Later, it was reported that lymphocyte antigen 6 complex, locus A (LY6A), a GPI-anchored membrane protein, responsible for specific engagement to the 7-mer insertion of PHP.B and PHP.eB and transcytosis at BBB [118, 119].”
Quote in the paperNot a substantial claim1 of 2 sources checked- cites [118] Huang Q, Chan KY, Tobey IG, Chan YA, Poterba T, Boutros CL, Balazs AB, Daneman R, Bloom JM, Seed C, et al. Delivering genes across the blood-brain barrier: LY6A, a novel cellular receptor for AAV-PHP.B capsids. PLoS One. 2019;14(11): e0225206. source
The Results section, “Interaction with Ly6a is necessary for the enhanced transduction phenotype of AAV-PHP.eB” (page unavailable), supports LY6A-dependent binding and transduction in mouse brain endothelial cells. The Discussion (page unavailable) reports increased binding by PHP.B variants with distinct seven-amino-acid insertions, but only suggests that LY6A could facilitate transcytosis across the C57BL/6J blood–brain barrier; it does not establish that transcytosis occurs through LY6A or that the insertion itself is the binding site. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [119] Hordeaux J, Yuan Y, Clark PM, Wang Q, Martino RA, Sims JJ, Bell P, Raymond A, Stanford WL, Wilson JM. The GPI-linked protein LY6A drives AAV-PHP.B Transport across the blood-brain barrier. Mol Ther. 2019;27(5):912–21. source
May combine two claims.
PremisecitationAAV9-PB5-3 complex used to express IDUA in the MPS I mouse model achieved more than twofold higher expression with successful phenotypic correction in the brains.
“Thus, AAV9-PB5-3 complex was used to express IDUA in the mucopolysaccharidosis type I (MPS I) mouse model and achieved more than twofold higher expression with successful phenotypic correction in the brains.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [144] Zhang X, Chai Z, Lee Dobbins A, Itano MS, Askew C, Miao Z, Niu H, Samulski RJ, Li C. Customized blood-brain barrier shuttle peptide to increase AAV9 vector crossing the BBB and augment transduction in the brain. Biomaterials. 2022;281: 121340. source
The Results section on the IDUA−/− mouse model reports more than twofold higher brain IDUA activity with AAV9-PB5-3 than with AAV9 alone, and significantly lower GAG levels. The Discussion describes increased phenotypic correction in the brains of MPS I mice. The reported twofold measure was enzyme activity, however, not a direct measure of IDUA expression. (LLM, conf=0.84)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationTHR peptide can increase BBB-crossing efficiency of AAV9 and improve brain transduction in a dose-dependent manner in mice.
“can increase the BBB-crossing efficiency of AAV9 and improve brain transduction in a dose-dependent manner in mice.”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [143] Zhang X, He T, Chai Z, Samulski RJ, Li C. Blood-brain barrier shuttle peptides enhance AAV transduction in the brain after systemic administration. Biomaterials. 2018;176:71–83. source
Results §3.2 (page unavailable) reports dose-dependent improvement in brain transduction in mice given THR-treated AAV8. Results §3.3 links THR to increased AAV8 crossing of the BBB. The cited experiments concern AAV8, not the AAV9 specified in the claim. (LLM, conf=0.90)
Experimental — accuracy not yet measured
May combine two claims.
PremisecitationAAV-F achieved 65-fold higher astrocyte transduction and 171-fold higher neuron transduction than parental AAV9.
“with 65-fold and 171-fold higher transduction of astrocytes and neurons than parental AAV9 respectively [129].”
Quote in the paperNot a substantial claim1 of 1 sources checked- cites [129] Hanlon KS, Meltzer JC, Buzhdygan T, Cheng MJ, Sena-Esteves M, Bennett RE, Sullivan TP, Razmpour R, Gong Y, Ng C, et al. Selection of an efficient AAV vector for robust CNS transgene expression. Mol Ther Methods Clin Dev. 2019;15:320–32. source
May combine two claims.
PremisecitationAAV-PHP.B and AAV-PHP.eB show significantly higher efficiency in transporting across the BBB in C57BL/6J mice after intravenous delivery but are starkly absent in BALB/cJ mice and marmosets.
“Gradinaru lab identified AAV-PHP⋅B and AAV-PHP.eB with significant higher efficiencies in transporting across the BBB in C57BL/6 J mice after intravenous delivery but starkly absent in BALB/cJ mice and marmosets [64–67].”
Quote in the paperNot a substantial claim3 of 4 sources checked- cites [64] Deverman BE, Pravdo PL, Simpson BP, Kumar SR, Chan KY, Banerjee A, Wu WL, Yang B, Huber N, Pasca SP, et al. Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain. Nat Biotechnol. 2016;34(2):204–9. source
The gene-transfer results (page unavailable) report significantly greater CNS gene transfer by intravenously delivered AAV-PHP.B than by AAV9, and the Vector biodistribution Methods specify C57Bl/6 mice. Our copy does not report AAV-PHP.eB or test whether either variant lacks this effect in BALB/cJ mice or marmosets. It also discusses BBB transport as a possible intermediate step rather than directly measuring greater BBB crossing. (LLM, conf=0.89)
Experimental — accuracy not yet measured - cites [65] Chan KY, Jang MJ, Yoo BB, Greenbaum A, Ravi N, Wu WL, Sanchez-Guardado L, Lois C, Mazmanian SK, Deverman BE, et al. Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems. Nat Neurosci. 2017;20(8):1172–9. source
The Discussion and Results report that AAV-PHP.B was selected for BBB crossing and that intravenously delivered AAV-PHP.eB efficiently transduced mouse brain cells. Methods (Animals; page unavailable) identifies C57BL/6J mice, but the paper does not report the claimed absence of BBB transport in BALB/cJ mice or marmosets. (LLM, conf=0.88)
Experimental — accuracy not yet measured - cites [66] Hordeaux J, Wang Q, Katz N, Buza EL, Bell P, Wilson JM. The neurotropic properties of AAV-PHPB are limited to C57BL/6J mice. Mol Ther. 2018;26(3):664–8. source
The Abstract reports that intravenous AAV-PHP.B produced much higher CNS transduction in C57BL/6J mice than AAV9, but not in BALB/cJ mice. It also reports low CNS transduction in rhesus macaques, not marmosets. The cited paper does not establish the claim about AAV-PHP.eB. (LLM, conf=0.90)
Experimental — accuracy not yet measured - cites [67] Matsuzaki Y, Konno A, Mochizuki R, Shinohara Y, Nitta K, Okada Y, Hirai H. Intravenous administration of the adeno-associated virus-PHP.B capsid fails to upregulate transduction efficiency in the marmoset brain. Neurosci Lett. 2018;665:182–8. source
May combine two claims.
PremisecitationPB5-3 peptide specifically binds to AAV9 serotype and enhances transduction efficiency in different brain cells in mice.
“Another PB5-3 peptide specifically bound to AAV9 serotype and enhanced transduction efficiency in different brain cells in mice [144].”
Quote in the paperSubstantial claim1 of 1 sources checked- cites [144] Zhang X, Chai Z, Lee Dobbins A, Itano MS, Askew C, Miao Z, Niu H, Samulski RJ, Li C. Customized blood-brain barrier shuttle peptide to increase AAV9 vector crossing the BBB and augment transduction in the brain. Biomaterials. 2022;281: 121340. source
May combine two claims.
Premisenone givenUbiquitous promoters are frequently chosen to reach potent expression, with over 50% usage reported in 106 clinical trials and 76% in CNS disorders.
“Ubiquitous promoters are frequently chosen to reach potent expression, with over 50% usage reported in 106 clinical trials and 76% in CNS disorders.”
Quote in the paperNot a substantial claimClassified as probably not a substantial claim.
PremisereasoningContinuing efforts are being made to optimize rAAV vectors from their core genetic payloads to their capsid structure.
“Therefore, continuing efforts are being made to optimize the rAAV vectors from their “core” genetic payloads to their “coat” or capsid structure.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationEnhancer elements amplify transcriptional signals through physical contact with target promoters in the presence of RNA polymerase II, while located either upstream or downstream of the promoter.
“Enhancer element functions by amplifying transcriptional signals through physical contact with its target promoters in the presence of RNA polymerase II, while located either in the upstream or downstream of the promoter [19].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [19] Blackwood EM, Kadonaga JT. Going the distance: a current view of enhancer action. Science. 1998;281(5373):60–3. source
May combine two claims.
Premisenone givenMajor challenges remain in applying rAAVs for CNS gene therapy, including suboptimal vector design, low CNS transduction efficiency and specificity, and therapy-induced immunotoxicity.
“However, major challenges remain in the application of rAAVs for CNS gene therapy, such as suboptimal vector design, low CNS transduction efficiency and specificity, and therapy-induced immunotoxicity.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S4 (based). May combine two claims.
Interpretationnone givenRecombinant adeno-associated viruses (rAAVs) are an attractive tool for gene delivery and have shown promise in gene therapy and gene editing, with potential one-and-done treatment benefits compared to conventional drugs.
“Recombinant adeno-associated viruses (rAAVs) have emerged as an attractive tool for gene delivery, and demonstrated tremendous promise in gene therapy and gene editing—therapeutic modalities with potential “one-and-done” treatment benefits compared to conventional drugs.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationAAV comprises a nonenveloped icosahedral viral capsid of approximately 26 nm in diameter, which encapsulates a linear single-stranded DNA genome of approximately 4.7 kb.
“AAV comprises of a nonenveloped icosahedral viral capsid of ~ 26 nm in diameter, which encapsulates a linear single-stranded DNA genome of ~ 4.7 kb [4].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [4] Tratschin JD, West MH, Sandbank T, Carter BJ. A human parvovirus, adeno-associated virus, as a eucaryotic vector: transient expression and encapsidation of the procaryotic gene for chloramphenicol acetyltransferase. Mol Cell Biol. 1984;4(10):2072–81. source
Probably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenAAV-mediated gene therapy has been galvanized by the marketing approval of Luxturna for RPE65-associated retinal dystrophy and Zolgensma for SMN1-linked spinal muscular atrophy.
“Recently, AAV-mediated gene therapy has been galvanized by the marketing approval of Luxturna for RPE65-associated retinal dystrophy and Zolgensma for SMN1-linked spinal muscular atrophy.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.
PremisecitationThe AAV genome contains symmetrical ITRs at each end, serving as the origin of DNA replication and packaging signals.
“The AAV genome contains symmetrical ITRs at each end, serving as the origin of DNA replication and packing signals [9].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [9] Wang XS, Ponnazhagan S, Srivastava A. Rescue and replication signals of the adeno-associated virus 2 genome. J Mol Biol. 1995;250(5):573–80. source
Probably not a substantial claim: may not pass S2 (checkable). May combine two claims.
InterpretationreasoningMore efforts are required in designing AAV vectors and optimizing therapeutic strategy in viral genome accommodation/optimization, capsid selection, administration route selection, and understanding potential toxicities.
“Despite these notable successes, more efforts are required in designing AAV vectors and optimizing the therapeutic strategy in areas including: (1) Viral genome accommodation and optimization; (2) AAV capsid selection for ideal efficiency and specificity; (3) Need-driven proper selection of administration routes; and (4) Understanding mechanisms of potential toxicities.”
Quote in the paperNot a substantial claimProbably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAAV-based therapies are actively being investigated in preclinical studies and clinical trials for other neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, and Huntington's disease.
“In addition, AAV-based therapies are actively being investigated in preclinical studies and clinical trials for other neurodegenerative diseases such as Alzheimer’s disease (AD), Parkinson’s disease (PD), and Huntington's disease (HD) [8].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [8] Deverman BE, Ravina BM, Bankiewicz KS, Paul SM, Sah DWY. Gene therapy for neurological disorders: progress and prospects. Nat Rev Drug Discov. 2018;17(9):641–59. source
May combine two claims.
PremisecitationPan and colleagues generated a CpG-free ITR with equivalent biological potency of transgene expression but with an approximately threefold reduction in yield.
“Thus, Pan and colleagues adopted rational engineering method to generate CpG-free ITR with equivalent biological potency of transgene expression, but with an approximately threefold reduction in yield [16].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [16] Pan X, Yue Y, Boftsi M, Wasala LP, Tran NT, Zhang K, Pintel DJ, Tai PWL, Duan D. Rational engineering of a functional CpG-free ITR for AAV gene therapy. Gene Ther. 2022;29(6):333–45. source
Probably not a substantial claim: may not pass S4 (based).
Premisenone givenThe rAAV genome controls transgene expression level, cell-type specificity, duration, and other important aspects of AAV therapeutics.
“The rAAV (recombinant adeno-associated virus) genome controls the transgene expression level, cell-type specificity, duration, and other important aspects of AAV therapeutics.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisenone givenssAAV requires host-cell DNA polymerase machinery to produce the complementary strand for transduction, which is a major limitation that slows transgene expression.
“The single-stranded AAV (ssAAV) requires the host-cell DNA polymerase machinery to produce the complementary strand for transduction which represents a major limitation that slows down the transgene expression.”
Quote in the paperSubstantial claimProbably not a substantial claim: may not pass S4 (based).
Premisenone givenrAAVs have tropisms for the central nervous system across various species including humans.
“Given their tropisms for the central nervous system (CNS) across various species including humans, rAAVs have been extensively investigated in both pre-clinical and clinical studies targeting neurodegenerative disease.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationThe promoter serves as a critical regulatory element for protein expression in the rAAV vector genome and determines expression level, cell- or tissue-specificity, and spatial and temporal characteristics.
“The promoter serves as a critical regulatory element for protein expression in the rAAV vector genome, and determines the expression level, cell- or tissue-specificity, and spatial and temporal characteristics [17].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [17] Goverdhana S, Puntel M, Xiong W, Zirger JM, Barcia C, Curtin JF, Soffer EB, Mondkar S, King GD, Hu J, et al. Regulatable gene expression systems for gene therapy applications: progress and future challenges. Mol Ther. 2005;12(2):189–211. source
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAAV is autonomously replication-defective unless aided by co-infection with a helper virus such as adenovirus, herpesvirus, or vaccinia virus.
“AAV was then characterized as an autonomously replication-defective virus unless aided by co-infection of a helper virus, such as adenovirus, herpesvirus, or vaccinia virus [2, 3].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [2] Berns KI, Linden RM. The cryptic life style of adeno-associated virus. BioEssays. 1995;17(3):237–45. source
- cites [3] Casto BC, Atchison RW, Hammon WM. Studies on the relationship between adeno-associated virus type I (AAV-1) and adenoviruses I. Replication of AAV-1 in certain cell cultures and its effect on helper adenovirus. Virology. 1967;32(1):52–9. source
May combine two claims.
PremisecitationAAV9 and AAV.rh10 provided widespread expression patterns beyond the injection site with glia- and neuron-tropism respectively.
“On the contrary, AAV9 and AAV.rh10 provided widespread expression patterns beyond the injection site with glia- and neuron-tropism respectively [78, 79].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [78] Watakabe A, Ohtsuka M, Kinoshita M, Takaji M, Isa K, Mizukami H, Ozawa K, Isa T, Yamamori T. Comparative analyses of adeno-associated viral vector serotypes 1, 2, 5, 8 and 9 in marmoset, mouse and macaque cerebral cortex. Neurosci Res. 2015;93:144–57. source
- cites [79] Sondhi D, Hackett NR, Peterson DA, Stratton J, Baad M, Travis KM, Wilson JM, Crystal RG. Enhanced survival of the LINCL mouse following CLN2 gene transfer using the rh.10 rhesus macaque-derived adeno-associated virus vector. Mol Ther. 2007;15(3):481–91. source
May combine two claims.
Premisenone givenThe BBB protects the brain by blocking entry of molecules greater than 400 Da into the CNS, concomitantly with inhibition of systemic delivery of therapeutic drugs.
“It protects the brain by blocking entry of molecules greater than 400 Da into the CNS, concomitantly with inhibition of systemic delivery of therapeutic drugs.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisenone givenAAV2 is the most extensively investigated serotype by far, known for its wide tissue tropism, especially in efficiently transducing neurons, which expands its clinical applications to neurological disorders.
“The most extensively investigated serotype by far is AAV2, known for its wide tissue tropism, especially in efficiently transducing neurons, which expands its clinical applications to neurological disorders.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationThe superiority of AAV.CPP.16 over AAV9 can translate from mice to non-human primates, showing 6- to 249-fold enhancement across 4 mouse strains and fivefold enhancement in non-human primates in CNS transduction after intravenous delivery.
“Strikingly, the superiority of AAV.CPP.16 over AAV9 can translate from mice to non-human primates, showing 6- to 249-fold enhancement across 4 mouse strains and fivefold enhancement in non-human primates (NHPs) in CNS transduction after intravenous delivery [57].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [57] Yao Y, Wang J, Liu Y, Qu Y, Wang K, Zhang Y, Chang Y, Yang Z, Wan J, Liu J, et al. Variants of the adeno-associated virus serotype 9 with enhanced penetration of the blood-brain barrier in rodents and primates. Nat Biomed Eng. 2022;6(11):1257–71. source
May combine two claims.
PremisecitationIV delivery is a non-invasive method and could take advantage of the dense vascular network in the brain and spinal cord for more uniform vector distribution but would require vectors to circumvent the obstacle of the BBB.
“IV delivery is a non-invasive method and could take advantage of the dense vascular network in the brain and spinal cord for more uniform vector distribution but would require vectors to circumvent the obstacle of BBB [110].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [110] Saraiva J, Nobre RJ, Pereira de Almeida L. Gene therapy for the CNS using AAVs: The impact of systemic delivery by AAV9. J Control Release. 2016;241:94–109. source
Probably not a substantial claim: may not pass S3 (load-bearing).
Premisenone givenSince the discovery of AAV, 13 AAV serotypes and more than 150 variants have been naturally isolated from human, non-human primates, and other animal species.
“Since the discovery of AAV as contaminants from adenovirus stocks, 13 AAV serotypes and more than 150 variants have been naturally isolated from human, non-human primates, and other animal species.”
Quote in the paperNot a substantial claimMay combine two claims.
Premisenone givenDirect CNS parenchymal injection is the most selected route for CNS diseases and can precisely transfer high concentrations of vectors to the target region via surgical approach, while bypassing the blockade of physiological barriers.
“The direct CNS parenchymal injection is the most selected route for CNS diseases and can precisely transfer high concentrations of vectors to the target region via surgical approach, while bypassing the blockade of physiological barriers.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAAV-DJ can only transduce a confined region but with higher efficiency than AAV2, suggesting an ideal vector for desired expression within a small area.
“Similarly, AAV-DJ can only transduce a confined region but with higher efficiency than AAV2, suggesting an ideal vector for desired expression within a small area [63].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [63] Grimm D, Lee JS, Wang L, Desai T, Akache B, Storm TA, Kay MA. In vitro and in vivo gene therapy vector evolution via multispecies interbreeding and retargeting of adeno-associated viruses. J Virol. 2008;82(12):5887–911. source
May combine two claims.
Interpretationnone givenSuccessful gene therapies for neurological disorders rely on careful design of AAV vector, including optimization of genome cassette and selection of capsid, and require the most appropriate route for AAV administration.
“Successful gene therapies for neurological disorders not only rely on the careful design of AAV vector, including optimization of genome cassette and selection of capsid, but also require the most appropriate route for AAV administration (Fig. 2).”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationAAV8 shows a broad range of tropism and has already been applied in clinical use for eye disorders and Lysosomal Storage Disorders.
“On the other hand, AAV8 shows a broad range of tropism and has already been applied in clinical use (Identifier: NCT03001310 and NCT04611503 for eye disorders, NCT04174105 and NCT03173521 for Lysosomal Storage Disorders).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites NCT03001310
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites NCT04611503
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites NCT04174105
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing).
PremisecitationAAV2-based LUXTURNA® has been approved by FDA in 2017 for use in patients with Leber's congenital amaurosis.
“For instance, AAV2-based LUXTURNA® has been approved by FDA in 2017 for use in patients with Leber's congenital amaurosis [38].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [38] Russell S, Bennett J, Wellman JA, Chung DC, Yu ZF, Tillman A, Wittes J, Pappas J, Elci O, McCague S, et al. Efficacy and safety of voretigene neparvovec (AAV2-hRPE65v2) in patients with RPE65-mediated inherited retinal dystrophy: a randomised, controlled, open-label, phase 3 trial. Lancet. 2017;390(10097):849–60. source
May combine two claims.
Premisenone givenReceptor-mediated transcytosis (RMT) is the most extensively investigated non-invasive way to deliver AAV through the BBB into the CNS, although the choice of receptors responsible for AAV trafficking across the BBB is still not well understood.
“In a non-invasive way to deliver AAV through the BBB into the CNS, the receptor-mediated transcytosis (RMT) is the most extensively investigated, although it is still not well understood the choice of receptors responsible for AAV trafficking across the BBB.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAAV9 holds the natural ability to cross the BBB and transduces the CNS after systemic administration.
“Moreover, AAV9 holds the natural ability to cross the BBB and transduces the CNS after systemic administration that will be further discussed in the sections below [54].”
Quote in the paperSubstantial claim0 of 1 sources checked- cites [54] Zincarelli C, Soltys S, Rengo G, Rabinowitz JE. Analysis of AAV serotypes 1–9 mediated gene expression and tropism in mice after systemic injection. Mol Ther. 2008;16(6):1073–80. source
May combine two claims.
Premisenone givenIT route injects therapeutic agents via lumbar puncture, which is the minimal invasive and easy access procedure for CSF delivery, transporting most molecules into the spinal cord with little transduction to the brain.
“IT route injects therapeutic agents via lumbar puncture, which is the minimal invasive and easy access procedure for CSF delivery, transporting most of molecules into the spinal cord with little transduction to the brain.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAAV2 shows minimal diffusion and primarily transduces neurons, and has been the most extensively used vector for IP delivery of therapeutic genes in clinical trials for neurodegenerative diseases, such as Alzheimer's disease and Parkinson's disease.
“AAV2 shows minimal diffusion and primarily transduces neurons, which has the most extensively used vector to IP delivery of therapeutic genes in clinical trials for neurodegenerative diseases, such as Alzheimer’s disease (Identifier: NCT04133454 and NCT00876863) and Parkinson’s disease (Identifier: NCT04167540, NCT00643890 and NCT02418598).”
Quote in the paperNot a substantial claim0 of 3 sources checked- cites NCT04133454
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites NCT00876863
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
- cites NCT04167540
Couldn’t be matched to a paper in Crossref, so it can’t be checked.
Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based). May combine two claims.
Premisenone givenAAV7 and AAV8 represent hepatocyte tropism, though their primary receptors are still unknown.
“Both, AAV7 and AAV8, represent hepatocyte tropism, though their primary receptors are still unknown.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationAAV1-driven release of single-chain variable fragment (scFv) antibodies targets Aβ deposition and attenuates cognitive deficits, preventing and treating Alzheimer's disease.
“AAV1-driven release of single-chain variable fragment (scFv) antibodies targets Aβ deposition and attenuates cognitive deficits, preventing and treating of Alzheimer’s disease [108, 109].”
Quote in the paperNot a substantial claim0 of 2 sources checked- cites [108] Wang YJ, Gao CY, Yang M, Liu XH, Sun Y, Pollard A, Dong XY, Wu XB, Zhong JH, Zhou HD, et al. Intramuscular delivery of a single chain antibody gene prevents brain Abeta deposition and cognitive impairment in a mouse model of Alzheimer’s disease. Brain Behav Immun. 2010;24(8):1281–93. source
- cites [109] Wang QH, Wang YR, Zhang T, Jiao SS, Liu YH, Zeng F, Li J, Yao XQ, Zhou HD, Zhou XF, et al. Intramuscular delivery of p75NTR ectodomain by an AAV vector attenuates cognitive deficits and Alzheimer’s disease-like pathologies in APP/PS1 transgenic mice. J Neurochem. 2016;138(1):163–73. source
May combine two claims.
PremisecitationIn the CNS, endogenous miR-124 can specifically de-target transduction of viral vectors in astrocytes in mouse brain, conferring the possibility to cell type-specific engineering.
“In the CNS, the endogenous miR-124 can specifically de-target transduction of viral vectors in astrocytes in mouse brain, conferring the possibility to cell type-specific engineering [34].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [34] Colin A, Faideau M, Dufour N, Auregan G, Hassig R, Andrieu T, Brouillet E, Hantraye P, Bonvento G, Deglon N. Engineered lentiviral vector targeting astrocytes in vivo. Glia. 2009;57(6):667–79. source
May combine two claims.
Premisenone givenLimitations of intra-CSF delivery include unfavorable flow dynamics of CSF and the huge size of human CNS organs often restricting virions to diffuse into deep CNS regions, and surgical procedures of ICM and ICV injection posing high-risk injury to the brain.
“However, the limitation of intra-CSF delivery still needs to be addressed: (1) unfavorable flow dynamics of CSF and the huge size of human CNS organs often restrict the virions to diffuse into the deep CNS regions; and (2) surgical procedure of ICM and ICV injection posing high-risk injury to the brain.”
Quote in the paperSubstantial claimMay combine two claims.
PremisecitationAAV2 without BBB-crossing ability was found to be endocytosed to transduce BMVEC, hardly to diffuse across the endothelial barrier.
“In contrary, AAV2 without BBB-crossing ability was found to be endocytosed to transduce BMVEC, hardly to diffuse across the endothelial barrier.”
Quote in the paperNot a substantial claimMay combine two claims.
PremisecitationTJ loss is observed in the white matter of MS lesions and is positively correlated with BBB breakdown.
“TJ loss was also observed in the white matter of MS lesions and positively correlated with BBB breakdown [124].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [124] Kirk J, Plumb J, Mirakhur M, McQuaid S. Tight junctional abnormality in multiple sclerosis white matter affects all calibres of vessel and is associated with blood-brain barrier leakage and active demyelination. J Pathol. 2003;201(2):319–27. source
May combine two claims.
PremisecitationSeveral clinical trials using IP-administered AAV2 gene therapies for AD have reported no positive outcomes despite demonstrating safety.
“Despite demonstrating safeties, several clinical trials using IP-administered AAV2 gene therapies so far have unfortunately reported no positive outcomes in treating AD [156].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [156] Rafii MS, Tuszynski MH, Thomas RG, Barba D, Brewer JB, Rissman RA, Siffert J, Aisen PS. Adeno-Associated Viral Vector (Serotype 2)-nerve growth factor for patients with alzheimer disease: a randomized clinical trial. JAMA Neurol. 2018;75(7):834–41. source
May combine two claims.
PremisecitationMannitol-mediated BBB disruption is temporary and reversible; BBB permeability peaks 5 min after intra-arterial infusion and lasts 20-30 min.
“As the mannitol-mediated BBB disruption is temporary and reversible, the BBB permeability peaks 5 min after intra-arterial (IA) infusion and lasts for 20–30 min [131, 132].”
Quote in the paperSubstantial claim0 of 2 sources checked- cites [131] Ikeda M, Bhattacharjee AK, Kondoh T, Nagashima T, Tamaki N. Synergistic effect of cold mannitol and Na(+)/Ca(2+) exchange blocker on blood-brain barrier opening. Biochem Biophys Res Commun. 2002;291(3):669–74. source
- cites [132] Rapoport SI. Advances in osmotic opening of the blood-brain barrier to enhance CNS chemotherapy. Expert Opin Investig Drugs. 2001;10(10):1809–18. source
May combine two claims.
PremisecitationAAVHSCs are neurotropic AAVs identified from healthy CD34+ human hematopoietic stem cells.
“AAVHSCs are another group of neurotropic AAVs identified from healthy CD34 + human hematopoietic stem cells [128].”
Quote in the paperNot a substantial claim0 of 1 sources checked- cites [128] Smith LJ, Ul-Hasan T, Carvaines SK, Van Vliet K, Yang E, Wong KK Jr, Agbandje-McKenna M, Chatterjee S. Gene transfer properties and structural modeling of human stem cell-derived AAV. Mol Ther. 2014;22(9):1625–34. source
The paper relies on this without support.
AAV can transduce both dividing and non-dividing cell types for long-term expression of a gene of interest.
“AAV can transduce both dividing and non-dividing cell types for long-term expression of gene of interest (GOI), and has relatively low immunogenicity and high affinity to neuronal or glial cells as compared with other viral vectors.”
The paper relies on this without support.
AAV has relatively low immunogenicity and high affinity to neuronal or glial cells compared with other viral vectors.
“AAV can transduce both dividing and non-dividing cell types for long-term expression of gene of interest (GOI), and has relatively low immunogenicity and high affinity to neuronal or glial cells as compared with other viral vectors.”
The paper relies on this without support.
Almost 40–80% of the human population are positive for AAV neutralization antibodies.
“Moreover, previous epidemiological analyses show that almost 40–80% of the human population are positive for AAV neutralization antibodies.”
The paper relies on this without support.
Tight junctions prevent paracellular transport and maintain BBB permeability and homeostasis.
“The tight junctions serve as a “gate” to prevent paracellular transport and maintain permeability and homeostasis of BBB.”
The paper relies on this without support.
High dosage of AAV9 vectors required to reach therapeutic outcome can lead to severe immune-related toxicity and liver damage.
“Moreover, high dosage of AAV9 vectors required to reach therapeutic outcome can lead to severe immune-related toxicity and liver damage.”
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
Each contradiction between two passages listed here was confirmed by an independent check.
Alzheimer's trial NCT04133454 is described as intraparenchymal AAV2 delivery
MinorThe text lists NCT04133454 as an example of intraparenchymal AAV2 delivery, but Table 1 lists its AAV type as N/A and its routes as intravenous and intrathecal.
“AAV2 shows minimal diffusion and primarily transduces neurons, which has the most extensively used vector to IP delivery of therapeutic genes in clinical trials for neurodegenerative diseases, such as Alzheimer’s disease (Identifier: NCT04133454 and NCT00876863)”
“| Alzheimer’s disease | AAV- hTERT (LGT) | N/A | IV and IT | N/A | hTERT | Overexpress | Completed | Libella Gene Therapeutics | NCT04133454 |”
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- Authors
- Xu, L., Yao, S., Ding, Y. E., Xie, M., Feng, D., Sha, P., Tan, L., Bei, F., & Yao, Y.
- Affiliations
- Soochow University (CN)
- Sun Yat-sen University (CN)
- Brigham and Women's Hospital (US)
- Jiangsu Province Hospital (CN)
- Corresponding author
- Yao, Shun
- Bei, Fengfeng
- Yao, Yizheng
- Venue
- Journal of Translational Medicine
- Published
- 2024-09-27
- Volume
- 22
- Issue
- 1
- Pages
- 866-866
- ISSN
- 1479-5876 (ISSN-L)
- PMC
- PMC11429861
- OpenAlex
- W4402906494
- Semantic Scholar
- f373ea73d3cece4968f1007acafeccb563a0afbe
- Cited by
- 48
- References
- 174
- Citations by year
- 2026: 23 · 2025: 20 · 2024: 5
- FWCI
- 12.73
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Journal of Translational Medicine (publishedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- PubMed Central (submittedVersion, cc-by-nc-nd)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
- Funders
- National Natural Science Foundation of China (82302385, 82101902)
- startup fund of Soochow University (NH21500323, NH21500124)
- Natural Science Foundation of Jiangsu Province (BK20201079)
- the Project of State Key Laboratory of Radiation Medicine and Protection of Soochow University (GZK12023051)
- Suzhou Municipal Science and Technology Development Project (SKY2023169)
- Pre-research Foundation of the Second Affiliated Hospital of Soochow University (SDFEYBS2216)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
- Life Sciences › Neuroscience › Neurology › Barrier Structure and Function Studies
- Keywords
- neurodegenerative diseases, CNS gene therapy, AAV capsid engineering, AAV serotypes, immunotoxicity, clinical trials, transgene expression
- MeSH terms
- Dependovirus, Animals, Clinical Trials as Topic, Genetic Vectors, Humans, Genetic Therapy, Neurodegenerative Diseases, Translational Research, Biomedical
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