Cited by 48Virus-based gene therapy researchRNA Interference and Gene DeliveryBarrier Structure and Function Studies

Designing and optimizing AAV-mediated gene therapy for neurodegenerative diseases: from bench to bedside

Open access
Xu, Liang, Yao, Shun, Ding, Yifan Evan, Xie, Mengxiao, Feng, Dingqi, Sha, Pengfei, Tan, Lu, Bei, Fengfeng +1 more·2024·Journal of Translational Medicine

Abstract

Recombinant adeno-associated viruses (rAAVs) have emerged as an attractive tool for gene delivery, and demonstrated tremendous promise in gene therapy and gene editing-therapeutic modalities with potential "one-and-done" treatment benefits compared to conventional drugs. Given their tropisms for the central nervous system (CNS) across various species including humans, rAAVs have been extensively investigated in both pre-clinical and clinical studies targeting neurodegenerative disease. However, major challenges remain in the application of rAAVs for CNS gene therapy, such as suboptimal vector design, low CNS transduction efficiency and specificity, and therapy-induced immunotoxicity. Therefore, continuing efforts are being made to optimize the rAAV vectors from their "core" genetic payloads to their "coat" or capsid structure. In this review, we describe current approaches for rAAV vector design tailored for transgene expression in the CNS, summarize the development of CNS-targeting AAV serotypes, and highlight recent advancements in AAV capsid engineering, aimed at generating a new generation of rAAVs with improved CNS tropism. Additionally, we discuss various administration routes for delivering rAAVs to the CNS and provide an overview of AAV-mediated gene therapies currently under investigation in clinical trials for the treatment of neurodegenerative diseases.

AI snapshot

Written from the paper’s full text.

TL;DR

This review summarizes rAAV vector design, capsid engineering, CNS delivery routes, and clinical translation for neurodegenerative diseases. It argues that effective AAV therapy requires coordinated optimization of the viral genome, capsid/serotype tropism, administration route, and immune management.

Key findings

  • Genome optimization can strongly affect expression and immunity: scAAV increases transduction 5- to 140-fold over ssAAV but reduces packaging capacity to 2.4 kb vs. 4.8 kb and can heighten TLR9/MyD88 innate immune responses; CpG-free ITRs retain potency but reduce yield about threefold; the MVM intron increased liver transgene expression 80-fold; WPRE effects were controversial and showed no effect with EF-1α or CAG promoter plus an intron.
  • Capsid engineering has produced CNS-targeted variants: AAV.CPP.16 showed 6- to 249-fold enhancement across 4 mouse strains and fivefold enhancement in non-human primates; AAV.CAP-B10 improved CNS tropism and de-targeted liver; AAV-F gave 65-fold and 171-fold higher astrocyte and neuron transduction than AAV9; 9P31 reached up to 400-fold higher brain transduction.
  • Delivery route shapes outcomes: intraparenchymal, intra-CSF (ICV, IT, ICM), intramuscular, and intravenous routes are used; AAV9 and AAV.rh10 cross the BBB but are more efficient in neonates than adults; intra-CSF avoids neutralizing antibodies and liver toxicity but faces flow and surgical limits; IV is non-invasive but raises high-dose immune, liver, DRG, and off-target concerns.
  • Clinical trials in Table 1 cover Alzheimer’s disease, Parkinson’s disease, Huntington’s disease, Canavan disease, spinal muscular atrophy, Krabbe disease, and GM1 gangliosidosis; Zolgensma for SMA uses 1.1 × 10^14 vg/kg, and 40–80% of humans are positive for AAV neutralizing antibodies.

Methods

  • Narrative review; no primary experiments. It synthesizes literature on rAAV genome design, naturally occurring serotypes, capsid bioengineering, CNS delivery routes, BBB-crossing mechanisms, and clinical trials.
  • Data include cited preclinical and clinical studies plus Table 1, which lists AAV-based gene therapy trials by disease, vector, route, dose, target, strategy, phase, sponsor, and identifier.
  • Main analysis is qualitative synthesis; no systematic search, meta-analysis, or new patient data are reported.

Limitations

  • Stated: major challenges remain, including suboptimal vector design, low CNS transduction efficiency and specificity, therapy-induced immunotoxicity, intra-CSF flow and surgical risks, IV high-dose immune response, DRG toxicity, off-target expression, and pre-existing neutralizing antibodies in 40–80% of humans.
  • Evident: as a narrative review, it does not systematically appraise or quantitatively pool evidence; Table 1 includes N/A entries and mixed trial phases/statuses, so comparative efficacy cannot be inferred.
  • Evident: many capsid enhancements are species- or strain-dependent—for example, PHP.B/PHP.eB failed to translate into primates—limiting direct clinical extrapolation.

Model-written summary. Check it against the paper before relying on it.

Integrity signals

Registry

Crossref · 10.1186/s12967-024-05661-2

Cites

174 of 174 references verified0 citation errors · 0 not checkable

Statistics

Nothing to recompute.

Claims the paper makes

68 of 139 cited sources checked · 33 supported · 0 flagged · accuracy not yet measured

  • Premisecitation

    The mouse DLX5/6 enhancer alone can induce specific gene expression in GABAergic interneurons in the forebrain.

    “Additionally, Dimidschstein demonstrated that the mouse DLX5/6 enhancer alone can induce specific gene expression in GABAergic interneurons in the forebrain [22].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [22] Dimidschstein J, Chen Q, Tremblay R, Rogers SL, Saldi GA, Guo L, Xu Q, Liu R, Lu C, Chu J, et al. A viral strategy for targeting and manipulating interneurons across vertebrate species. Nat Neurosci. 2016;19(12):1743–9. source
  • Interpretationcitation

    AAV viral vectors provide valuable opportunities for clinical applications in the treatment of neurodegenerative diseases.

    “Thus, AAV viral vectors provide valuable opportunities for clinical applications in the treatment of neurodegenerative diseases [5, 6].”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [5] Herzog RW. Encouraging and unsettling findings in long-term follow-up of AAV gene transfer. Mol Ther. 2020;28(2):341–2. source

      The main text (page unavailable) describes AAV vectors as suitable for long-term gene therapy and reports clinical benefits for inherited blindness and hemophilia. It does not address treatment of neurodegenerative diseases, so it supports the general clinical potential of AAV vectors but not the disease-specific claim. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [6] Balakrishnan B, Jayandharan GR. Basic biology of adeno-associated virus (AAV) vectors used in gene therapy. Curr Gene Ther. 2014;14(2):86–100. source
    • Rests on an assumption: AAV can transduce both dividing and non-dividing cell types for long-term expression of a gene of interest.
    • Rests on an assumption: AAV has relatively low immunogenicity and high affinity to neuronal or glial cells compared with other viral vectors.
  • Premisecitation

    scAAV heightens innate immune response via enhanced activation of TLR9/MyD88 signaling in a dose-dependent manner with induction of IL-6, TNF-α, and other proinflammatory cytokines.

    “Notably, scAAV heightens innate immune response via enhanced activation of the TLR9/MyD88 signaling in a dose-dependent manner with induction of IL-6, TNF-α, and other proinflammatory cytokines [13, 14], suggesting increased immunogenicity associated with scAAV.”
    Quote in the paperSubstantial claim1 of 2 sources checked
    • cites [13] Martino AT, Suzuki M, Markusic DM, Zolotukhin I, Ryals RC, Moghimi B, Ertl HC, Muruve DA, Lee B, Herzog RW. The genome of self-complementary adeno-associated viral vectors increases Toll-like receptor 9-dependent innate immune responses in the liver. Blood. 2011;117(24):6459–68. source
    • cites [14] Wu T, Topfer K, Lin SW, Li H, Bian A, Zhou XY, High KA, Ertl HC. Self-complementary AAVs induce more potent transgene product-specific immune responses compared to a single-stranded genome. Mol Ther. 2012;20(3):572–9. source
  • Premisecitation

    Bioengineering of novel AAV variants for BBB-crossing and CNS targeting has achieved some successes, yielding AAV.CPP.16, AAV.CAP-B10, and AAV.cc47 with variable enhancements over AAV9 from mice to NHPs.

    “The bioengineering of novel AAV variants in terms of BBB-crossing and CNS targeting has achieved some successes in recent years, yielding AAV.CPP.16 [57], AAV.CAP-B10 [68] and AAV.cc47 [111] with variable enhancements over AAV9 from mice to NHPs.”
    Quote in the paperNot a substantial claim2 of 3 sources checked
    • cites [57] Yao Y, Wang J, Liu Y, Qu Y, Wang K, Zhang Y, Chang Y, Yang Z, Wan J, Liu J, et al. Variants of the adeno-associated virus serotype 9 with enhanced penetration of the blood-brain barrier in rodents and primates. Nat Biomed Eng. 2022;6(11):1257–71. source
    • cites [68] Goertsen D, Flytzanis NC, Goeden N, Chuapoco MR, Cummins A, Chen Y, Fan Y, Zhang Q, Sharma J, Duan Y, et al. AAV capsid variants with brain-wide transgene expression and decreased liver targeting after intravenous delivery in mouse and marmoset. Nat Neurosci. 2022;25(1):106–15. source
    • cites [111] Gonzalez TJ, Simon KE, Blondel LO, Fanous MM, Roger AL, Maysonet MS, Devlin GW, Smith TJ, Oh DK, Havlik LP, et al. Cross-species evolution of a highly potent AAV variant for therapeutic gene transfer and genome editing. Nat Commun. 2022;13(1):5947. source
  • Premisecitation

    The circulation of CSF delivers viral vectors to broader CNS regions when compared to IP injection.

    “The circulation of CSF delivers viral vectors to broader CNS regions when compared to IP injection [86].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [86] Gray SJ, Nagabhushan Kalburgi S, McCown TJ, Jude Samulski R. Global CNS gene delivery and evasion of anti-AAV-neutralizing antibodies by intrathecal AAV administration in non-human primates. Gene Ther. 2013;20(4):450–9. source

      The Introduction (page unavailable) says that injection into CSF allows diffuse delivery to large areas of the brain and spinal cord. The Discussion (page unavailable) reports widespread CNS transduction after lumbar-cistern injection. Neither passage establishes that this delivery reaches broader CNS regions than IP injection; the paper’s described comparisons concern other injection routes. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
  • Classified as probably not a substantial claim. 17
  • May combine two claims. 54
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    The most commonly used ubiquitous promoters include CAG, CBA, and CMV promoters.

    “Among the most commonly used ubiquitous promoters are cytomegalovirus immediate early enhancer/chicken β actin/rabbit β-globin (CAG) promoter, the chicken beta-acting (CBA) promoter and the cytomegalovirus (CMV) promoter [18].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [18] Au HKE, Isalan M, Mielcarek M. Gene therapy advances: a meta-analysis of AAV usage in clinical settings. Front Med (Lausanne). 2021;8: 809118. source
  • May combine two claims.

    Premisecitation

    Intron elements are generally positioned downstream of a promoter and enhance gene expression by improving mRNA stability and facilitating mRNA export to the cytoplasm.

    “Intron element is generally positioned downstream of a promoter and enhances gene expression by improving mRNA stability and facilitating mRNA export to the cytoplasm [23].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [23] Reed R, Hurt E. A conserved mRNA export machinery coupled to pre-mRNA splicing. Cell. 2002;108(4):523–31. source

      The passage describing the splicing-coupled export model (labelled Abstract; page not supplied) says that splicing recruits export factors and that the spliced mRNA moves to the cytoplasm. It does not say that intron elements are generally positioned downstream of a promoter or that they enhance gene expression by improving mRNA stability. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    In silico design approach to reconstruct and discover new capsid was first reported in 2015.

    “With technological advancements of computational modeling and machine learning, an in silico design approach to reconstruct and discover new capsid was first reported in 2015 [69, 70].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [69] Zinn E, Pacouret S, Khaychuk V, Turunen HT, Carvalho LS, Andres-Mateos E, Shah S, Shelke R, Maurer AC, Plovie E, et al. In silico reconstruction of the viral evolutionary lineage yields a potent gene therapy vector. Cell Rep. 2015;12(6):1056–68. source

      The Discussion (page unavailable) says the authors inferred ancestral AAV capsid sequences through in silico modeling and identified a new AAV-like particle, Anc80L65. It does not establish that this approach was first reported in 2015; it describes an earlier viral-ancestor reconstruction as a methodological precedent. (LLM, conf=0.86)

      Experimental — accuracy not yet measured
    • cites [70] Santiago-Ortiz J, Ojala DS, Westesson O, Weinstein JR, Wong SY, Steinsapir A, Kumar S, Holmes I, Schaffer DV. AAV ancestral reconstruction library enables selection of broadly infectious viral variants. Gene Ther. 2015;22(12):934–46. source

      The Introduction describes reconstructing the AAV capsid and selecting new, broadly infectious variants, supporting the core description of the approach. It also describes earlier ancestral reconstructions of viral proteins, so this paper does not establish that such an approach was first reported in 2015. The passages have no page numbers in our copy. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    Gradinaru's lab developed the CREATE platform and identified PhP.B and PhP.eB, which showed overwhelming superiority of CNS transduction after systemic delivery in some mouse strains but failed to translate into NHPs.

    “Based on such strategy, Gradinaru’s lab developed Cre recombination-based AAV targeted evolution (CREATE) platform and successfully identified PhP.B and PhP.eB [64, 65], showing overwhelming superiority of CNS transduction after systemic delivery in some mouse strains but unfortunately failed to translate into NHPs [66, 67].”
    Quote in the paperNot a substantial claim3 of 4 sources checked
    • cites [64] Deverman BE, Pravdo PL, Simpson BP, Kumar SR, Chan KY, Banerjee A, Wu WL, Yang B, Huber N, Pasca SP, et al. Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain. Nat Biotechnol. 2016;34(2):204–9. source

      The paper’s Abstract describes CREATE and identifies AAV-PHP.B, reporting at least 40-fold greater CNS gene transfer than AAV9 after intravenous injection in adult mice. It does not identify AAV-PHP.eB; the citing sentence pairs this paper with another citation for the variants. The NHP translation claim is attached to separate citations [66, 67], not to this source. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites [65] Chan KY, Jang MJ, Yoo BB, Greenbaum A, Ravi N, Wu WL, Sanchez-Guardado L, Lois C, Mazmanian SK, Deverman BE, et al. Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems. Nat Neurosci. 2017;20(8):1172–9. source
    • cites [66] Hordeaux J, Wang Q, Katz N, Buza EL, Bell P, Wilson JM. The neurotropic properties of AAV-PHPB are limited to C57BL/6J mice. Mol Ther. 2018;26(3):664–8. source

      The Abstract and Main Text report that intravenous PHP.B produced much higher CNS transduction in C57BL/6J mice than AAV9, but that this advantage was not found in BALB/cJ mice or nonhuman primates. The source does not establish the same mouse-strain and NHP findings for PHP.eB. The CREATE-platform identification is attached to other citations in the citing sentence. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [67] Matsuzaki Y, Konno A, Mochizuki R, Shinohara Y, Nitta K, Okada Y, Hirai H. Intravenous administration of the adeno-associated virus-PHP.B capsid fails to upregulate transduction efficiency in the marmoset brain. Neurosci Lett. 2018;665:182–8. source
  • May combine two claims.

    Premisecitation

    Later, they optimized the CREATE platform by introducing a peptide library into the surface-exposed AA455 loop of PhP.eB capsid and obtained AAV.CAP-B10 with enhanced CNS tropism and simultaneously de-targeted from liver expression in both mice and marmosets.

    “Later, they optimized the CREATE platform by introducing peptide library into the surface-exposed AA455 loop of PhP.eB capsid and obtained a variant AAV.CAP-B10 with enhanced CNS tropism and simultaneously de-targeted from liver expression in both mice and marmosets [68].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [68] Goertsen D, Flytzanis NC, Goeden N, Chuapoco MR, Cummins A, Chen Y, Fan Y, Zhang Q, Sharma J, Duan Y, et al. AAV capsid variants with brain-wide transgene expression and decreased liver targeting after intravenous delivery in mouse and marmoset. Nat Neurosci. 2022;25(1):106–15. source
  • May combine two claims.

    Premisecitation

    Incorporation of 5 copies of miR-122 target sequences has shown enhanced inhibitory effects over 3 copies in the liver of ICR mice, while without any significant change in transduction efficiency in 293 T cells.

    “Incorporation of 5 copies of miR-122 target sequences has shown enhanced inhibitory effects over 3 copies in the liver of ICR mice, while without any significant change in transduction efficiency in 293 T cells [33].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [33] Qiao C, Yuan Z, Li J, He B, Zheng H, Mayer C, Li J, Xiao X. Liver-specific microRNA-122 target sequences incorporated in AAV vectors efficiently inhibits transgene expression in the liver. Gene Ther. 2011;18(4):403–10. source

      The Results report greater reductions in liver luciferase expression with five miR-122 target copies than with three after plasmid injection; the Methods identify the mice used for hydrodynamic injection as ICR mice (pages unavailable). The Results also report no difference in luciferase activity in transfected 293 cells, but the paper does not identify them as 293T cells or measure transduction efficiency in that comparison. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    Compared to systemic delivery, the intra-CSF route performs a more invasive procedure, but attenuates exposure to pre-existing neutralizing antibodies from the vascular system and avoids the risk of liver toxicity after intravenous administration of high doses.

    “While comparing to systemic delivery, intra-CSF route performs in a more invasive procedure, but on the other hand, attenuates the exposure to pre-existing neutralizing antibodies from vascular system and avoids the risk of liver toxicity after intravenous administration of high doses [87].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [87] Lu CT, Zhao YZ, Wong HL, Cai J, Peng L, Tian XQ. Current approaches to enhance CNS delivery of drugs across the brain barriers. Int J Nanomedicine. 2014;9:2241–57. source

      Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
  • May combine two claims.

    Interpretationcitation

    AAV7 induces a stronger anti-AAV immune response in the hemophilia B population than AAV8, which makes AAV8 suitable for hemophilia B patients in clinical trials.

    “Notably, AAV7 induces stronger anti-AAV immune response in the hemophilia B population than AAV8 [49], which makes AAV8 suitable for hemophilia B patients in clinical trials (Identifier: NCT01620801 and NCT00979238).”
    Quote in the paperNot a substantial claim1 of 3 sources checked
    • cites [49] Shao W, Pei X, Cui C, Askew C, Dobbins A, Chen X, Abajas YL, Gerber DA, Samulski RJ, Nichols TC, et al. Superior human hepatocyte transduction with adeno-associated virus vector serotype 7. Gene Ther. 2019;26(12):504–14. source

      The Results section (page unavailable) reports neutralizing antibodies to AAV7 in all 26 hemophilia patients tested, versus no detectable antibodies to AAV8 in six. But the study measured pre-existing antibodies, not whether AAV7 induces a stronger immune response, and it does not conclude that this comparison makes AAV8 suitable for clinical trials. (LLM, conf=0.87)

      Experimental — accuracy not yet measured
    • cites NCT01620801

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites NCT00979238

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • May combine two claims.

    Premisecitation

    AAV9 binds to terminal galactose and shows efficient transduction in CNS, eye, cardiac and skeletal muscle, and liver.

    “Another validated vector with broad tropism is AAV9, binding to terminal galactose and showing efficient transduction in CNS, eye, cardiac and skeletal muscle, and liver [50–53].”
    Quote in the paperNot a substantial claim1 of 4 sources checked
    • cites [50] Gray SJ, Matagne V, Bachaboina L, Yadav S, Ojeda SR, Samulski RJ. Preclinical differences of intravascular AAV9 delivery to neurons and glia: a comparative study of adult mice and nonhuman primates. Mol Ther. 2011;19(6):1058–69. source
    • cites [51] Bell CL, Vandenberghe LH, Bell P, Limberis MP, Gao GP, Van Vliet K, Agbandje-McKenna M, Wilson JM. The AAV9 receptor and its modification to improve in vivo lung gene transfer in mice. J Clin Invest. 2011;121(6):2427–35. source

      The Discussion identifies terminal β-galactose linkages as mediating AAV9 binding, and the Results report efficient liver transduction and efficient cardiac and skeletal muscle transduction at higher doses. The Results describe CNS transduction after intravenous injection as detectable, and the Discussion calls neuronal transduction limited—not efficient. The passages do not establish efficient eye transduction by AAV9. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [52] Fechner H, Sipo I, Westermann D, Pinkert S, Wang X, Suckau L, Kurreck J, Zeichhardt H, Muller O, Vetter R, et al. Cardiac-targeted RNA interference mediated by an AAV9 vector improves cardiac function in coxsackievirus B3 cardiomyopathy. J Mol Med (Berl). 2008;86(9):987–97. source
    • cites [53] Pacak CA, Mah CS, Thattaliyath BD, Conlon TJ, Lewis MA, Cloutier DE, Zolotukhin I, Tarantal AF, Byrne BJ. Recombinant adeno-associated virus serotype 9 leads to preferential cardiac transduction in vivo. Circ Res. 2006;99(4):e3-9. source
  • May combine two claims.

    Premisecitation

    Later studies characterized Anc80L65, demonstrating great transduction efficiency for retinas, inner ear, and notable expression in the CNS after systemic gene transfer.

    “Later, more studies further characterized the vector Anc80L65, demonstrating great transduction efficiency for retinas [71], inner ear [72], and even notable expression in the CNS after systemic gene transfer [73].”
    Quote in the paperNot a substantial claim3 of 3 sources checked
    • cites [71] Carvalho LS, Xiao R, Wassmer SJ, Langsdorf A, Zinn E, Pacouret S, Shah S, Comander JI, Kim LA, Lim L, et al. Synthetic adeno-associated viral vector efficiently targets mouse and nonhuman primate retina in vivo. Hum Gene Ther. 2018;29(7):771–84. source
    • cites [72] Landegger LD, Pan B, Askew C, Wassmer SJ, Gluck SD, Galvin A, Taylor R, Forge A, Stankovic KM, Holt JR, et al. A synthetic AAV vector enables safe and efficient gene transfer to the mammalian inner ear. Nat Biotechnol. 2017;35(3):280–4. source
    • cites [73] Hudry E, Andres-Mateos E, Lerner EP, Volak A, Cohen O, Hyman BT, Maguire CA, Vandenberghe LH. Efficient gene transfer to the central nervous system by single-stranded Anc80L65. Mol Ther Methods Clin Dev. 2018;10:197–209. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Addition of SV40 intron confers about twofold enhancement of AAV transgene expression in lung carcinoma cells.

    “Moreover, addition of SV40 intron confers about twofold enhancement of AAV transgene expression in lung carcinoma cells [25].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [25] Ostedgaard LS, Rokhlina T, Karp PH, Lashmit P, Afione S, Schmidt M, Zabner J, Stinski MF, Chiorini JA, Welsh MJ. A shortened adeno-associated virus expression cassette for CFTR gene transfer to cystic fibrosis airway epithelia. Proc Natl Acad Sci USA. 2005;102(8):2952–7. source

      The Results and Discussion report increased β-gal activity with an SV40 intron in a full-length promoter construct and with the 113CMV promoter, but no increase with the 173CMV promoter. The paper does not state an approximately twofold increase, and it says the intron was not included in the AAV expression cassette. Materials and Methods describe the intron tests as plasmid-transfection experiments in cell lines, rather than tests of intron-containing AAV vectors. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    Compared to IT route, ICV administration accesses the ventricles requiring an invasive stereotaxic surgery but has been demonstrated to be safe in clinical trials and achieve widespread AAV distribution in the brain.

    “Comparing to IT route, ICV administration accesses the ventricles requiring an invasive stereotaxic surgery but has been demonstrated to be safe in clinical trials and achieve widespread AAV distribution in the brain [93].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [93] Duma C, Kopyov O, Kopyov A, Berman M, Lander E, Elam M, Arata M, Weiland D, Cannell R, Caraway C, et al. Human intracerebroventricular (ICV) injection of autologous, non-engineered, adipose-derived stromal vascular fraction (ADSVF) for neurodegenerative disorders: results of a 3-year phase 1 study of 113 injections in 31 patients. Mol Biol Rep. 2019;46(5):5257–72. source

      The Ommaya reservoir implantation technique describes image-guided surgery to place a ventricular catheter, and the Safety section reports on ICV injections in a phase 1 trial. But the trial administered ADSVF cells, not AAV, and the paper does not demonstrate widespread AAV distribution in the brain. It also notes that patients with an existing VP shunt did not require reservoir implantation. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    AAV-mediated gene therapy using IM delivery is minimally invasive in local muscle tissue and undergoes a cascade intracellular event for retrograde axonal trafficking into neuronal soma.

    “AAV-mediated gene therapy using IM delivery is minimally invasive in local muscle tissue and undergoes a cascade intracellular event for retrograde axonal trafficking into neuronal soma [99, 100].”
    Quote in the paperSubstantial claim2 of 2 sources checked
    • cites [99] Tosolini AP, Sleigh JN. Intramuscular delivery of gene therapy for targeting the nervous system. Front Mol Neurosci. 2020;13:129. source
    • cites [100] Chen Z, Fan G, Li A, Yuan J, Xu T. rAAV2-retro enables extensive and high-efficient transduction of lower motor neurons following intramuscular injection. Mol Ther Methods Clin Dev. 2020;17:21–33. source

      The Discussion (page unavailable) describes intramuscular administration as minimally invasive and says rAAV can use axonal transport to travel toward lower motor neurons. It does not describe a cascade of intracellular events leading to the neuronal soma; it also reports cerebrospinal-fluid spread as a pathway for the extensive transduction observed in this study. (LLM, conf=0.83)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    A novel variant AAV-TT derived from AAV2 revealed strong neurotropism and exceeded transduction of AAV9 and AAVrh10 in mice, even correcting neurological deficits in the mouse model of MPSIIIC.

    “It is noted a novel variant AAV-TT derived from AAV2 revealed strong neurotropism and exceeded transduction of AAV9 and AAVrh10 in mice, even correcting neurological deficits in the mouse model of MPSIIIC [61].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [61] Tordo J, O’Leary C, Antunes A, Palomar N, Aldrin-Kirk P, Basche M, Bennett A, D’Souza Z, Gleitz H, Godwin A, et al. A novel adeno-associated virus capsid with enhanced neurotropism corrects a lysosomal transmembrane enzyme deficiency. Brain. 2018;141(7):2014–31. source
  • May combine two claims.

    Premisecitation

    Albright and colleagues identified essential 8 amino acid residues on the AAVrh.10 capsid that mediated transport across the BBB and grafted them onto AAV1 capsid, enabling the new chimeric capsid to cross the BBB and preferentially transduce neurons in C57/Bl6 mice.

    “Moreover, Albright and colleagues identified the essential 8 amino acid residues on the AAVrh.10 capsid that mediated transport across the BBB and grafted onto AAV1 capsid, enabling the new chimeric capsid to cross the BBB and preferentially transduced neurons in C57/Bl6 mice [58].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [58] Albright BH, Storey CM, Murlidharan G, Castellanos Rivera RM, Berry GE, Madigan VJ, Asokan A. Mapping the structural determinants required for AAVrh.10 transport across the blood-brain barrier. Mol Ther. 2018;26(2):510–23. source
  • May combine two claims.

    Premisecitation

    Ramirez and colleagues demonstrated that AAV9 preferably crossed brain-endothelial barriers through an active, cell-mediated process, while little transduced endothelial cells.

    “Ramirez and colleagues [115] demonstrated that AAV9 preferably crossed brain-endothelial barriers through an active, cell-mediated process, while little transduced endothelial cells.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [115] Merkel SF, Andrews AM, Lutton EM, Mu D, Hudry E, Hyman BT, Maguire CA, Ramirez SH. Trafficking of adeno-associated virus vectors across a model of the blood-brain barrier; a comparative study of transcytosis and transduction using primary human brain endothelial cells. J Neurochem. 2017;140(2):216–30. source
  • May combine two claims.

    Premisecitation

    AAV-mediated expression of AADC increases dopamine production and confers benefits to some PD patients with moderate motor improvement.

    “Increasing dopamine production by AAV-mediated expression of the L-aromatic acid decarboxylase (AADC) enzyme, conferring benefits to some PD patients with moderately motor improvement [161]”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [161] Christine CW, Richardson RM, Van Laar AD, Thompson ME, Fine EM, Khwaja OS, Li C, Liang GS, Meier A, Roberts EW, et al. Safety of AADC gene therapy for moderately advanced Parkinson disease: three-year outcomes from the PD-1101 trial. Neurology. 2022;98(1):e40–50. source

      The introduction describes VY-AADC01 as designed to increase dopamine production, but says localized production is expected rather than reporting a direct measurement of increased dopamine. The Results report increased AADC activity and improved motor scores in participants with moderately advanced PD; the Discussion characterizes clinical benefit as potential. The claim overstates the certainty of increased dopamine production and benefit. (LLM, conf=0.85)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    Optimal transduction of AAV2 vectors in the brain was achieved by IV injection of AAV 8 min after mannitol administration; delivery less than 5 min or 10 min after mannitol infusion was ten times less efficient.

    “a study showed that the optimal transduction of AAV2 vectors in the brain was achieved by IV injection of AAV 8 min after mannitol administration; delivery of the vector less than 5 min or 10 min after mannitol infusion was ten times less efficient.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [133] McCarty DM, DiRosario J, Gulaid K, Muenzer J, Fu H. Mannitol-facilitated CNS entry of rAAV2 vector significantly delayed the neurological disease progression in MPS IIIB mice. Gene Ther. 2009;16(11):1340–52. source

      Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    THR peptide increased AAV8 transcytosis in hCMEC/D3 endothelial cells and delivered more virion across the BBB to the brain parenchyma.

    “further mechanistic study revealed the THR peptide increased the AAV8 transcytosis in hCMEC/D3 endothelial cells and delivered more virion across the BBB to the brain parenchyma [143].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [143] Zhang X, He T, Chai Z, Samulski RJ, Li C. Blood-brain barrier shuttle peptides enhance AAV transduction in the brain after systemic administration. Biomaterials. 2018;176:71–83. source
  • May combine two claims.

    Premisecitation

    AAVrh.8 better transduces neurons, astrocytes, and oligodendrocytes and has low peripheral tropism compared to AAV9 and AAVrh.10.

    “AAVrh.8 was shown to better transduce neurons, astrocytes, and oligodendrocytes, while with low peripheral tropism compared to AAV9 and AAVrh.10 [126, 127].”
    Quote in the paperNot a substantial claim2 of 2 sources checked
    • cites [126] Tanguy Y, Biferi MG, Besse A, Astord S, Cohen-Tannoudji M, Marais T, Barkats M. Systemic AAVrh10 provides higher transgene expression than AAV9 in the brain and the spinal cord of neonatal mice. Front Mol Neurosci. 2015;8:36. source

      The Materials and methods section describes vectors of serotypes AAV9 and AAVrh10, not AAVrh.8. The Results compare those two serotypes in the peripheral nervous system and in the heart and liver, but provide no AAVrh.8 comparison. A search for AAVrh.8/AAVrh8 found no passage addressing its cell transduction or peripheral tropism. (LLM, conf=0.77)

      Experimental — accuracy not yet measured
    • cites [127] Zhang H, Yang B, Mu X, Ahmed SS, Su Q, He R, Wang H, Mueller C, Sena-Esteves M, Brown R, et al. Several rAAV vectors efficiently cross the blood-brain barrier and transduce neurons and astrocytes in the neonatal mouse central nervous system. Mol Ther. 2011;19(8):1440–8. source

      The Discussion (page unavailable) identifies rAAVrh.10, rAAVrh.39, rAAVrh.43, and rAAV9 as effective CNS vectors, but does not assess AAVrh.8. Searches for AAVrh.8, oligodendrocytes, and peripheral tropism found no passage supporting the claimed comparison. (LLM, conf=0.76)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    LY6A is responsible for specific engagement to the 7-mer insertion of PHP.B and PHP.eB and for transcytosis at the BBB.

    “Later, it was reported that lymphocyte antigen 6 complex, locus A (LY6A), a GPI-anchored membrane protein, responsible for specific engagement to the 7-mer insertion of PHP.B and PHP.eB and transcytosis at BBB [118, 119].”
    Quote in the paperNot a substantial claim1 of 2 sources checked
    • cites [118] Huang Q, Chan KY, Tobey IG, Chan YA, Poterba T, Boutros CL, Balazs AB, Daneman R, Bloom JM, Seed C, et al. Delivering genes across the blood-brain barrier: LY6A, a novel cellular receptor for AAV-PHP.B capsids. PLoS One. 2019;14(11): e0225206. source

      The Results section, “Interaction with Ly6a is necessary for the enhanced transduction phenotype of AAV-PHP.eB” (page unavailable), supports LY6A-dependent binding and transduction in mouse brain endothelial cells. The Discussion (page unavailable) reports increased binding by PHP.B variants with distinct seven-amino-acid insertions, but only suggests that LY6A could facilitate transcytosis across the C57BL/6J blood–brain barrier; it does not establish that transcytosis occurs through LY6A or that the insertion itself is the binding site. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [119] Hordeaux J, Yuan Y, Clark PM, Wang Q, Martino RA, Sims JJ, Bell P, Raymond A, Stanford WL, Wilson JM. The GPI-linked protein LY6A drives AAV-PHP.B Transport across the blood-brain barrier. Mol Ther. 2019;27(5):912–21. source
  • May combine two claims.

    Premisecitation

    AAV9-PB5-3 complex used to express IDUA in the MPS I mouse model achieved more than twofold higher expression with successful phenotypic correction in the brains.

    “Thus, AAV9-PB5-3 complex was used to express IDUA in the mucopolysaccharidosis type I (MPS I) mouse model and achieved more than twofold higher expression with successful phenotypic correction in the brains.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [144] Zhang X, Chai Z, Lee Dobbins A, Itano MS, Askew C, Miao Z, Niu H, Samulski RJ, Li C. Customized blood-brain barrier shuttle peptide to increase AAV9 vector crossing the BBB and augment transduction in the brain. Biomaterials. 2022;281: 121340. source

      The Results section on the IDUA−/− mouse model reports more than twofold higher brain IDUA activity with AAV9-PB5-3 than with AAV9 alone, and significantly lower GAG levels. The Discussion describes increased phenotypic correction in the brains of MPS I mice. The reported twofold measure was enzyme activity, however, not a direct measure of IDUA expression. (LLM, conf=0.84)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    THR peptide can increase BBB-crossing efficiency of AAV9 and improve brain transduction in a dose-dependent manner in mice.

    “can increase the BBB-crossing efficiency of AAV9 and improve brain transduction in a dose-dependent manner in mice.”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [143] Zhang X, He T, Chai Z, Samulski RJ, Li C. Blood-brain barrier shuttle peptides enhance AAV transduction in the brain after systemic administration. Biomaterials. 2018;176:71–83. source

      Results §3.2 (page unavailable) reports dose-dependent improvement in brain transduction in mice given THR-treated AAV8. Results §3.3 links THR to increased AAV8 crossing of the BBB. The cited experiments concern AAV8, not the AAV9 specified in the claim. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
  • May combine two claims.

    Premisecitation

    AAV-F achieved 65-fold higher astrocyte transduction and 171-fold higher neuron transduction than parental AAV9.

    “with 65-fold and 171-fold higher transduction of astrocytes and neurons than parental AAV9 respectively [129].”
    Quote in the paperNot a substantial claim1 of 1 sources checked
    • cites [129] Hanlon KS, Meltzer JC, Buzhdygan T, Cheng MJ, Sena-Esteves M, Bennett RE, Sullivan TP, Razmpour R, Gong Y, Ng C, et al. Selection of an efficient AAV vector for robust CNS transgene expression. Mol Ther Methods Clin Dev. 2019;15:320–32. source
  • May combine two claims.

    Premisecitation

    AAV-PHP.B and AAV-PHP.eB show significantly higher efficiency in transporting across the BBB in C57BL/6J mice after intravenous delivery but are starkly absent in BALB/cJ mice and marmosets.

    “Gradinaru lab identified AAV-PHP⋅B and AAV-PHP.eB with significant higher efficiencies in transporting across the BBB in C57BL/6 J mice after intravenous delivery but starkly absent in BALB/cJ mice and marmosets [64–67].”
    Quote in the paperNot a substantial claim3 of 4 sources checked
    • cites [64] Deverman BE, Pravdo PL, Simpson BP, Kumar SR, Chan KY, Banerjee A, Wu WL, Yang B, Huber N, Pasca SP, et al. Cre-dependent selection yields AAV variants for widespread gene transfer to the adult brain. Nat Biotechnol. 2016;34(2):204–9. source

      The gene-transfer results (page unavailable) report significantly greater CNS gene transfer by intravenously delivered AAV-PHP.B than by AAV9, and the Vector biodistribution Methods specify C57Bl/6 mice. Our copy does not report AAV-PHP.eB or test whether either variant lacks this effect in BALB/cJ mice or marmosets. It also discusses BBB transport as a possible intermediate step rather than directly measuring greater BBB crossing. (LLM, conf=0.89)

      Experimental — accuracy not yet measured
    • cites [65] Chan KY, Jang MJ, Yoo BB, Greenbaum A, Ravi N, Wu WL, Sanchez-Guardado L, Lois C, Mazmanian SK, Deverman BE, et al. Engineered AAVs for efficient noninvasive gene delivery to the central and peripheral nervous systems. Nat Neurosci. 2017;20(8):1172–9. source

      The Discussion and Results report that AAV-PHP.B was selected for BBB crossing and that intravenously delivered AAV-PHP.eB efficiently transduced mouse brain cells. Methods (Animals; page unavailable) identifies C57BL/6J mice, but the paper does not report the claimed absence of BBB transport in BALB/cJ mice or marmosets. (LLM, conf=0.88)

      Experimental — accuracy not yet measured
    • cites [66] Hordeaux J, Wang Q, Katz N, Buza EL, Bell P, Wilson JM. The neurotropic properties of AAV-PHPB are limited to C57BL/6J mice. Mol Ther. 2018;26(3):664–8. source

      The Abstract reports that intravenous AAV-PHP.B produced much higher CNS transduction in C57BL/6J mice than AAV9, but not in BALB/cJ mice. It also reports low CNS transduction in rhesus macaques, not marmosets. The cited paper does not establish the claim about AAV-PHP.eB. (LLM, conf=0.90)

      Experimental — accuracy not yet measured
    • cites [67] Matsuzaki Y, Konno A, Mochizuki R, Shinohara Y, Nitta K, Okada Y, Hirai H. Intravenous administration of the adeno-associated virus-PHP.B capsid fails to upregulate transduction efficiency in the marmoset brain. Neurosci Lett. 2018;665:182–8. source
  • May combine two claims.

    Premisecitation

    PB5-3 peptide specifically binds to AAV9 serotype and enhances transduction efficiency in different brain cells in mice.

    “Another PB5-3 peptide specifically bound to AAV9 serotype and enhanced transduction efficiency in different brain cells in mice [144].”
    Quote in the paperSubstantial claim1 of 1 sources checked
    • cites [144] Zhang X, Chai Z, Lee Dobbins A, Itano MS, Askew C, Miao Z, Niu H, Samulski RJ, Li C. Customized blood-brain barrier shuttle peptide to increase AAV9 vector crossing the BBB and augment transduction in the brain. Biomaterials. 2022;281: 121340. source
  • May combine two claims.

    Premisenone given

    Ubiquitous promoters are frequently chosen to reach potent expression, with over 50% usage reported in 106 clinical trials and 76% in CNS disorders.

    “Ubiquitous promoters are frequently chosen to reach potent expression, with over 50% usage reported in 106 clinical trials and 76% in CNS disorders.”
    Quote in the paperNot a substantial claim
  • Classified as probably not a substantial claim.

    Premisereasoning

    Continuing efforts are being made to optimize rAAV vectors from their core genetic payloads to their capsid structure.

    “Therefore, continuing efforts are being made to optimize the rAAV vectors from their “core” genetic payloads to their “coat” or capsid structure.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    Enhancer elements amplify transcriptional signals through physical contact with target promoters in the presence of RNA polymerase II, while located either upstream or downstream of the promoter.

    “Enhancer element functions by amplifying transcriptional signals through physical contact with its target promoters in the presence of RNA polymerase II, while located either in the upstream or downstream of the promoter [19].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [19] Blackwood EM, Kadonaga JT. Going the distance: a current view of enhancer action. Science. 1998;281(5373):60–3. source
  • May combine two claims.

    Premisenone given

    Major challenges remain in applying rAAVs for CNS gene therapy, including suboptimal vector design, low CNS transduction efficiency and specificity, and therapy-induced immunotoxicity.

    “However, major challenges remain in the application of rAAVs for CNS gene therapy, such as suboptimal vector design, low CNS transduction efficiency and specificity, and therapy-induced immunotoxicity.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S4 (based). May combine two claims.

    Interpretationnone given

    Recombinant adeno-associated viruses (rAAVs) are an attractive tool for gene delivery and have shown promise in gene therapy and gene editing, with potential one-and-done treatment benefits compared to conventional drugs.

    “Recombinant adeno-associated viruses (rAAVs) have emerged as an attractive tool for gene delivery, and demonstrated tremendous promise in gene therapy and gene editing—therapeutic modalities with potential “one-and-done” treatment benefits compared to conventional drugs.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    AAV comprises a nonenveloped icosahedral viral capsid of approximately 26 nm in diameter, which encapsulates a linear single-stranded DNA genome of approximately 4.7 kb.

    “AAV comprises of a nonenveloped icosahedral viral capsid of ~ 26 nm in diameter, which encapsulates a linear single-stranded DNA genome of ~ 4.7 kb [4].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [4] Tratschin JD, West MH, Sandbank T, Carter BJ. A human parvovirus, adeno-associated virus, as a eucaryotic vector: transient expression and encapsidation of the procaryotic gene for chloramphenicol acetyltransferase. Mol Cell Biol. 1984;4(10):2072–81. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisenone given

    AAV-mediated gene therapy has been galvanized by the marketing approval of Luxturna for RPE65-associated retinal dystrophy and Zolgensma for SMN1-linked spinal muscular atrophy.

    “Recently, AAV-mediated gene therapy has been galvanized by the marketing approval of Luxturna for RPE65-associated retinal dystrophy and Zolgensma for SMN1-linked spinal muscular atrophy.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing). May combine two claims.

    Premisecitation

    The AAV genome contains symmetrical ITRs at each end, serving as the origin of DNA replication and packaging signals.

    “The AAV genome contains symmetrical ITRs at each end, serving as the origin of DNA replication and packing signals [9].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [9] Wang XS, Ponnazhagan S, Srivastava A. Rescue and replication signals of the adeno-associated virus 2 genome. J Mol Biol. 1995;250(5):573–80. source
  • Probably not a substantial claim: may not pass S2 (checkable). May combine two claims.

    Interpretationreasoning

    More efforts are required in designing AAV vectors and optimizing therapeutic strategy in viral genome accommodation/optimization, capsid selection, administration route selection, and understanding potential toxicities.

    “Despite these notable successes, more efforts are required in designing AAV vectors and optimizing the therapeutic strategy in areas including: (1) Viral genome accommodation and optimization; (2) AAV capsid selection for ideal efficiency and specificity; (3) Need-driven proper selection of administration routes; and (4) Understanding mechanisms of potential toxicities.”
    Quote in the paperNot a substantial claim
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    AAV-based therapies are actively being investigated in preclinical studies and clinical trials for other neurodegenerative diseases such as Alzheimer's disease, Parkinson's disease, and Huntington's disease.

    “In addition, AAV-based therapies are actively being investigated in preclinical studies and clinical trials for other neurodegenerative diseases such as Alzheimer’s disease (AD), Parkinson’s disease (PD), and Huntington's disease (HD) [8].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [8] Deverman BE, Ravina BM, Bankiewicz KS, Paul SM, Sah DWY. Gene therapy for neurological disorders: progress and prospects. Nat Rev Drug Discov. 2018;17(9):641–59. source
  • May combine two claims.

    Premisecitation

    Pan and colleagues generated a CpG-free ITR with equivalent biological potency of transgene expression but with an approximately threefold reduction in yield.

    “Thus, Pan and colleagues adopted rational engineering method to generate CpG-free ITR with equivalent biological potency of transgene expression, but with an approximately threefold reduction in yield [16].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [16] Pan X, Yue Y, Boftsi M, Wasala LP, Tran NT, Zhang K, Pintel DJ, Tai PWL, Duan D. Rational engineering of a functional CpG-free ITR for AAV gene therapy. Gene Ther. 2022;29(6):333–45. source
  • Probably not a substantial claim: may not pass S4 (based).

    Premisenone given

    The rAAV genome controls transgene expression level, cell-type specificity, duration, and other important aspects of AAV therapeutics.

    “The rAAV (recombinant adeno-associated virus) genome controls the transgene expression level, cell-type specificity, duration, and other important aspects of AAV therapeutics.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisenone given

    ssAAV requires host-cell DNA polymerase machinery to produce the complementary strand for transduction, which is a major limitation that slows transgene expression.

    “The single-stranded AAV (ssAAV) requires the host-cell DNA polymerase machinery to produce the complementary strand for transduction which represents a major limitation that slows down the transgene expression.”
    Quote in the paperSubstantial claim
  • Probably not a substantial claim: may not pass S4 (based).

    Premisenone given

    rAAVs have tropisms for the central nervous system across various species including humans.

    “Given their tropisms for the central nervous system (CNS) across various species including humans, rAAVs have been extensively investigated in both pre-clinical and clinical studies targeting neurodegenerative disease.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    The promoter serves as a critical regulatory element for protein expression in the rAAV vector genome and determines expression level, cell- or tissue-specificity, and spatial and temporal characteristics.

    “The promoter serves as a critical regulatory element for protein expression in the rAAV vector genome, and determines the expression level, cell- or tissue-specificity, and spatial and temporal characteristics [17].”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [17] Goverdhana S, Puntel M, Xiong W, Zirger JM, Barcia C, Curtin JF, Soffer EB, Mondkar S, King GD, Hu J, et al. Regulatable gene expression systems for gene therapy applications: progress and future challenges. Mol Ther. 2005;12(2):189–211. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    AAV is autonomously replication-defective unless aided by co-infection with a helper virus such as adenovirus, herpesvirus, or vaccinia virus.

    “AAV was then characterized as an autonomously replication-defective virus unless aided by co-infection of a helper virus, such as adenovirus, herpesvirus, or vaccinia virus [2, 3].”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [2] Berns KI, Linden RM. The cryptic life style of adeno-associated virus. BioEssays. 1995;17(3):237–45. source
    • cites [3] Casto BC, Atchison RW, Hammon WM. Studies on the relationship between adeno-associated virus type I (AAV-1) and adenoviruses I. Replication of AAV-1 in certain cell cultures and its effect on helper adenovirus. Virology. 1967;32(1):52–9. source
  • May combine two claims.

    Premisecitation

    AAV9 and AAV.rh10 provided widespread expression patterns beyond the injection site with glia- and neuron-tropism respectively.

    “On the contrary, AAV9 and AAV.rh10 provided widespread expression patterns beyond the injection site with glia- and neuron-tropism respectively [78, 79].”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [78] Watakabe A, Ohtsuka M, Kinoshita M, Takaji M, Isa K, Mizukami H, Ozawa K, Isa T, Yamamori T. Comparative analyses of adeno-associated viral vector serotypes 1, 2, 5, 8 and 9 in marmoset, mouse and macaque cerebral cortex. Neurosci Res. 2015;93:144–57. source
    • cites [79] Sondhi D, Hackett NR, Peterson DA, Stratton J, Baad M, Travis KM, Wilson JM, Crystal RG. Enhanced survival of the LINCL mouse following CLN2 gene transfer using the rh.10 rhesus macaque-derived adeno-associated virus vector. Mol Ther. 2007;15(3):481–91. source
  • May combine two claims.

    Premisenone given

    The BBB protects the brain by blocking entry of molecules greater than 400 Da into the CNS, concomitantly with inhibition of systemic delivery of therapeutic drugs.

    “It protects the brain by blocking entry of molecules greater than 400 Da into the CNS, concomitantly with inhibition of systemic delivery of therapeutic drugs.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisenone given

    AAV2 is the most extensively investigated serotype by far, known for its wide tissue tropism, especially in efficiently transducing neurons, which expands its clinical applications to neurological disorders.

    “The most extensively investigated serotype by far is AAV2, known for its wide tissue tropism, especially in efficiently transducing neurons, which expands its clinical applications to neurological disorders.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    The superiority of AAV.CPP.16 over AAV9 can translate from mice to non-human primates, showing 6- to 249-fold enhancement across 4 mouse strains and fivefold enhancement in non-human primates in CNS transduction after intravenous delivery.

    “Strikingly, the superiority of AAV.CPP.16 over AAV9 can translate from mice to non-human primates, showing 6- to 249-fold enhancement across 4 mouse strains and fivefold enhancement in non-human primates (NHPs) in CNS transduction after intravenous delivery [57].”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [57] Yao Y, Wang J, Liu Y, Qu Y, Wang K, Zhang Y, Chang Y, Yang Z, Wan J, Liu J, et al. Variants of the adeno-associated virus serotype 9 with enhanced penetration of the blood-brain barrier in rodents and primates. Nat Biomed Eng. 2022;6(11):1257–71. source
  • May combine two claims.

    Premisecitation

    IV delivery is a non-invasive method and could take advantage of the dense vascular network in the brain and spinal cord for more uniform vector distribution but would require vectors to circumvent the obstacle of the BBB.

    “IV delivery is a non-invasive method and could take advantage of the dense vascular network in the brain and spinal cord for more uniform vector distribution but would require vectors to circumvent the obstacle of BBB [110].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [110] Saraiva J, Nobre RJ, Pereira de Almeida L. Gene therapy for the CNS using AAVs: The impact of systemic delivery by AAV9. J Control Release. 2016;241:94–109. source
  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisenone given

    Since the discovery of AAV, 13 AAV serotypes and more than 150 variants have been naturally isolated from human, non-human primates, and other animal species.

    “Since the discovery of AAV as contaminants from adenovirus stocks, 13 AAV serotypes and more than 150 variants have been naturally isolated from human, non-human primates, and other animal species.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisenone given

    Direct CNS parenchymal injection is the most selected route for CNS diseases and can precisely transfer high concentrations of vectors to the target region via surgical approach, while bypassing the blockade of physiological barriers.

    “The direct CNS parenchymal injection is the most selected route for CNS diseases and can precisely transfer high concentrations of vectors to the target region via surgical approach, while bypassing the blockade of physiological barriers.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    AAV-DJ can only transduce a confined region but with higher efficiency than AAV2, suggesting an ideal vector for desired expression within a small area.

    “Similarly, AAV-DJ can only transduce a confined region but with higher efficiency than AAV2, suggesting an ideal vector for desired expression within a small area [63].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [63] Grimm D, Lee JS, Wang L, Desai T, Akache B, Storm TA, Kay MA. In vitro and in vivo gene therapy vector evolution via multispecies interbreeding and retargeting of adeno-associated viruses. J Virol. 2008;82(12):5887–911. source
  • May combine two claims.

    Interpretationnone given

    Successful gene therapies for neurological disorders rely on careful design of AAV vector, including optimization of genome cassette and selection of capsid, and require the most appropriate route for AAV administration.

    “Successful gene therapies for neurological disorders not only rely on the careful design of AAV vector, including optimization of genome cassette and selection of capsid, but also require the most appropriate route for AAV administration (Fig. 2).”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    AAV8 shows a broad range of tropism and has already been applied in clinical use for eye disorders and Lysosomal Storage Disorders.

    “On the other hand, AAV8 shows a broad range of tropism and has already been applied in clinical use (Identifier: NCT03001310 and NCT04611503 for eye disorders, NCT04174105 and NCT03173521 for Lysosomal Storage Disorders).”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites NCT03001310

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites NCT04611503

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites NCT04174105

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing).

    Premisecitation

    AAV2-based LUXTURNA® has been approved by FDA in 2017 for use in patients with Leber's congenital amaurosis.

    “For instance, AAV2-based LUXTURNA® has been approved by FDA in 2017 for use in patients with Leber's congenital amaurosis [38].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [38] Russell S, Bennett J, Wellman JA, Chung DC, Yu ZF, Tillman A, Wittes J, Pappas J, Elci O, McCague S, et al. Efficacy and safety of voretigene neparvovec (AAV2-hRPE65v2) in patients with RPE65-mediated inherited retinal dystrophy: a randomised, controlled, open-label, phase 3 trial. Lancet. 2017;390(10097):849–60. source
  • May combine two claims.

    Premisenone given

    Receptor-mediated transcytosis (RMT) is the most extensively investigated non-invasive way to deliver AAV through the BBB into the CNS, although the choice of receptors responsible for AAV trafficking across the BBB is still not well understood.

    “In a non-invasive way to deliver AAV through the BBB into the CNS, the receptor-mediated transcytosis (RMT) is the most extensively investigated, although it is still not well understood the choice of receptors responsible for AAV trafficking across the BBB.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    AAV9 holds the natural ability to cross the BBB and transduces the CNS after systemic administration.

    “Moreover, AAV9 holds the natural ability to cross the BBB and transduces the CNS after systemic administration that will be further discussed in the sections below [54].”
    Quote in the paperSubstantial claim0 of 1 sources checked
    • cites [54] Zincarelli C, Soltys S, Rengo G, Rabinowitz JE. Analysis of AAV serotypes 1–9 mediated gene expression and tropism in mice after systemic injection. Mol Ther. 2008;16(6):1073–80. source
  • May combine two claims.

    Premisenone given

    IT route injects therapeutic agents via lumbar puncture, which is the minimal invasive and easy access procedure for CSF delivery, transporting most molecules into the spinal cord with little transduction to the brain.

    “IT route injects therapeutic agents via lumbar puncture, which is the minimal invasive and easy access procedure for CSF delivery, transporting most of molecules into the spinal cord with little transduction to the brain.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    AAV2 shows minimal diffusion and primarily transduces neurons, and has been the most extensively used vector for IP delivery of therapeutic genes in clinical trials for neurodegenerative diseases, such as Alzheimer's disease and Parkinson's disease.

    “AAV2 shows minimal diffusion and primarily transduces neurons, which has the most extensively used vector to IP delivery of therapeutic genes in clinical trials for neurodegenerative diseases, such as Alzheimer’s disease (Identifier: NCT04133454 and NCT00876863) and Parkinson’s disease (Identifier: NCT04167540, NCT00643890 and NCT02418598).”
    Quote in the paperNot a substantial claim0 of 3 sources checked
    • cites NCT04133454

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites NCT00876863

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

    • cites NCT04167540

      Couldn’t be matched to a paper in Crossref, so it can’t be checked.

  • Probably not a substantial claim: may not pass S3 (load-bearing), S4 (based). May combine two claims.

    Premisenone given

    AAV7 and AAV8 represent hepatocyte tropism, though their primary receptors are still unknown.

    “Both, AAV7 and AAV8, represent hepatocyte tropism, though their primary receptors are still unknown.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    AAV1-driven release of single-chain variable fragment (scFv) antibodies targets Aβ deposition and attenuates cognitive deficits, preventing and treating Alzheimer's disease.

    “AAV1-driven release of single-chain variable fragment (scFv) antibodies targets Aβ deposition and attenuates cognitive deficits, preventing and treating of Alzheimer’s disease [108, 109].”
    Quote in the paperNot a substantial claim0 of 2 sources checked
    • cites [108] Wang YJ, Gao CY, Yang M, Liu XH, Sun Y, Pollard A, Dong XY, Wu XB, Zhong JH, Zhou HD, et al. Intramuscular delivery of a single chain antibody gene prevents brain Abeta deposition and cognitive impairment in a mouse model of Alzheimer’s disease. Brain Behav Immun. 2010;24(8):1281–93. source
    • cites [109] Wang QH, Wang YR, Zhang T, Jiao SS, Liu YH, Zeng F, Li J, Yao XQ, Zhou HD, Zhou XF, et al. Intramuscular delivery of p75NTR ectodomain by an AAV vector attenuates cognitive deficits and Alzheimer’s disease-like pathologies in APP/PS1 transgenic mice. J Neurochem. 2016;138(1):163–73. source
  • May combine two claims.

    Premisecitation

    In the CNS, endogenous miR-124 can specifically de-target transduction of viral vectors in astrocytes in mouse brain, conferring the possibility to cell type-specific engineering.

    “In the CNS, the endogenous miR-124 can specifically de-target transduction of viral vectors in astrocytes in mouse brain, conferring the possibility to cell type-specific engineering [34].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [34] Colin A, Faideau M, Dufour N, Auregan G, Hassig R, Andrieu T, Brouillet E, Hantraye P, Bonvento G, Deglon N. Engineered lentiviral vector targeting astrocytes in vivo. Glia. 2009;57(6):667–79. source
  • May combine two claims.

    Premisenone given

    Limitations of intra-CSF delivery include unfavorable flow dynamics of CSF and the huge size of human CNS organs often restricting virions to diffuse into deep CNS regions, and surgical procedures of ICM and ICV injection posing high-risk injury to the brain.

    “However, the limitation of intra-CSF delivery still needs to be addressed: (1) unfavorable flow dynamics of CSF and the huge size of human CNS organs often restrict the virions to diffuse into the deep CNS regions; and (2) surgical procedure of ICM and ICV injection posing high-risk injury to the brain.”
    Quote in the paperSubstantial claim
  • May combine two claims.

    Premisecitation

    AAV2 without BBB-crossing ability was found to be endocytosed to transduce BMVEC, hardly to diffuse across the endothelial barrier.

    “In contrary, AAV2 without BBB-crossing ability was found to be endocytosed to transduce BMVEC, hardly to diffuse across the endothelial barrier.”
    Quote in the paperNot a substantial claim
  • May combine two claims.

    Premisecitation

    TJ loss is observed in the white matter of MS lesions and is positively correlated with BBB breakdown.

    “TJ loss was also observed in the white matter of MS lesions and positively correlated with BBB breakdown [124].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [124] Kirk J, Plumb J, Mirakhur M, McQuaid S. Tight junctional abnormality in multiple sclerosis white matter affects all calibres of vessel and is associated with blood-brain barrier leakage and active demyelination. J Pathol. 2003;201(2):319–27. source
  • May combine two claims.

    Premisecitation

    Several clinical trials using IP-administered AAV2 gene therapies for AD have reported no positive outcomes despite demonstrating safety.

    “Despite demonstrating safeties, several clinical trials using IP-administered AAV2 gene therapies so far have unfortunately reported no positive outcomes in treating AD [156].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [156] Rafii MS, Tuszynski MH, Thomas RG, Barba D, Brewer JB, Rissman RA, Siffert J, Aisen PS. Adeno-Associated Viral Vector (Serotype 2)-nerve growth factor for patients with alzheimer disease: a randomized clinical trial. JAMA Neurol. 2018;75(7):834–41. source
  • May combine two claims.

    Premisecitation

    Mannitol-mediated BBB disruption is temporary and reversible; BBB permeability peaks 5 min after intra-arterial infusion and lasts 20-30 min.

    “As the mannitol-mediated BBB disruption is temporary and reversible, the BBB permeability peaks 5 min after intra-arterial (IA) infusion and lasts for 20–30 min [131, 132].”
    Quote in the paperSubstantial claim0 of 2 sources checked
    • cites [131] Ikeda M, Bhattacharjee AK, Kondoh T, Nagashima T, Tamaki N. Synergistic effect of cold mannitol and Na(+)/Ca(2+) exchange blocker on blood-brain barrier opening. Biochem Biophys Res Commun. 2002;291(3):669–74. source
    • cites [132] Rapoport SI. Advances in osmotic opening of the blood-brain barrier to enhance CNS chemotherapy. Expert Opin Investig Drugs. 2001;10(10):1809–18. source
  • May combine two claims.

    Premisecitation

    AAVHSCs are neurotropic AAVs identified from healthy CD34+ human hematopoietic stem cells.

    “AAVHSCs are another group of neurotropic AAVs identified from healthy CD34 + human hematopoietic stem cells [128].”
    Quote in the paperNot a substantial claim0 of 1 sources checked
    • cites [128] Smith LJ, Ul-Hasan T, Carvaines SK, Van Vliet K, Yang E, Wong KK Jr, Agbandje-McKenna M, Chatterjee S. Gene transfer properties and structural modeling of human stem cell-derived AAV. Mol Ther. 2014;22(9):1625–34. source
66 of 66
  • The paper relies on this without support.

    AAV can transduce both dividing and non-dividing cell types for long-term expression of a gene of interest.

    “AAV can transduce both dividing and non-dividing cell types for long-term expression of gene of interest (GOI), and has relatively low immunogenicity and high affinity to neuronal or glial cells as compared with other viral vectors.”
  • The paper relies on this without support.

    AAV has relatively low immunogenicity and high affinity to neuronal or glial cells compared with other viral vectors.

    “AAV can transduce both dividing and non-dividing cell types for long-term expression of gene of interest (GOI), and has relatively low immunogenicity and high affinity to neuronal or glial cells as compared with other viral vectors.”
  • The paper relies on this without support.

    Almost 40–80% of the human population are positive for AAV neutralization antibodies.

    “Moreover, previous epidemiological analyses show that almost 40–80% of the human population are positive for AAV neutralization antibodies.”
  • The paper relies on this without support.

    Tight junctions prevent paracellular transport and maintain BBB permeability and homeostasis.

    “The tight junctions serve as a “gate” to prevent paracellular transport and maintain permeability and homeostasis of BBB.”
  • The paper relies on this without support.

    High dosage of AAV9 vectors required to reach therapeutic outcome can lead to severe immune-related toxicity and liver damage.

    “Moreover, high dosage of AAV9 vectors required to reach therapeutic outcome can lead to severe immune-related toxicity and liver damage.”
5 of 5

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

Each contradiction between two passages listed here was confirmed by an independent check.

  • Alzheimer's trial NCT04133454 is described as intraparenchymal AAV2 delivery

    Minor

    The text lists NCT04133454 as an example of intraparenchymal AAV2 delivery, but Table 1 lists its AAV type as N/A and its routes as intravenous and intrathecal.

1 of 1

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Authors
Xu, L., Yao, S., Ding, Y. E., Xie, M., Feng, D., Sha, P., Tan, L., Bei, F., & Yao, Y.
Affiliations
  • Soochow University (CN)
  • Sun Yat-sen University (CN)
  • Brigham and Women's Hospital (US)
  • Jiangsu Province Hospital (CN)
Corresponding author
  • Yao, Shun
  • Bei, Fengfeng
  • Yao, Yizheng
Venue
Journal of Translational Medicine
Published
2024-09-27
Volume
22
Issue
1
Pages
866-866
ISSN
1479-5876 (ISSN-L)
OpenAlex
W4402906494
Cited by
48
References
174
Citations by year
2026: 23 · 2025: 20 · 2024: 5
FWCI
12.73
Type
journal article
Language
en
Open access
Locations
  • Journal of Translational Medicine (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion, cc-by-nc-nd)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion)
Funders
  • National Natural Science Foundation of China (82302385, 82101902)
  • startup fund of Soochow University (NH21500323, NH21500124)
  • Natural Science Foundation of Jiangsu Province (BK20201079)
  • the Project of State Key Laboratory of Radiation Medicine and Protection of Soochow University (GZK12023051)
  • Suzhou Municipal Science and Technology Development Project (SKY2023169)
  • Pre-research Foundation of the Second Affiliated Hospital of Soochow University (SDFEYBS2216)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
  • Life Sciences › Neuroscience › Neurology › Barrier Structure and Function Studies
Keywords
neurodegenerative diseases, CNS gene therapy, AAV capsid engineering, AAV serotypes, immunotoxicity, clinical trials, transgene expression
MeSH terms
Dependovirus, Animals, Clinical Trials as Topic, Genetic Vectors, Humans, Genetic Therapy, Neurodegenerative Diseases, Translational Research, Biomedical

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Claims read by deepseek-v4.1-flash under definition version 3 (extract-v3) on 2026-10-28.

Classified by jev-1.13-20260917 (gold-guideline-v0.2) on 2026-10-28.

Cited sources are checked by gpt-6-sol.

Statistics and arithmetic are recomputed, not judged.

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