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Solvent water interactions within the active site of the membrane type I matrix metalloproteinase.
Abstract
EPR, MCD, crystallographic and QM/MM investigation reveals the role of the 1st solvation shell waters in the catalytic mechanism of MT1-MMP.
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The MT-loop is flexible and only present in the four membrane type MMPs, but the conformation of the MT-loop is different in each membrane type MMP and in MT1-MMP complexed with or without TIMPs.
“The MT-loop is flexible and only present in the four membrane type MMPs, but the conformation of the MT-loop is different in each membrane type MMP (61) and in MT1-MMP complexed with or without TIMPs (62–64).”
From Identification of amino acid residues in the MT-loop of MT1-MMP critical for its ability to cleave low-density lipoprotein receptor (2022) · cites this paper as [63]
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Research works printed but not linked: 102
- Kamioka, 2011, J. Cell. Physiol., 226, 1554, 10.1002/jcp.22492 · DOI
- Eisenach, 2012, J. Biol. Chem., 287, 11533, 10.1074/jbc.M111.306340 · DOI
- Pahwa, 2014, Cancers, 6, 416, 10.3390/cancers6010416 · DOI
- Hotary, 2003, Cell, 114, 33, 10.1016/S0092-8674(03)00513-0 · DOI
- S. Gupta and V.Patil , in Matrix Metalloproteinase Inhibitors , ed. S. P. Gupta , Springer Basel , 2012 , vol. 103, ch. 2, pp. 35–56 · DOI
- Vandenbroucke, 2014, Nat. Rev. Drug Discovery, 13, 904, 10.1038/nrd4390 · DOI
- Pelmenschikov, 2002, Inorg. Chem., 41, 5659, 10.1021/ic0255656 · DOI
- Decaneto, 2015, Biophys. J., 109, 2371, 10.1016/j.bpj.2015.10.023 · DOI
- Johnson, 2000, J. Biol. Chem., 275, 11026, 10.1074/jbc.275.15.11026 · DOI
- Stein, 1994, Arch. Biochem. Biophys., 308, 274, 10.1006/abbi.1994.1038 · DOI
- Arza, 2001, Eur. J. Biochem., 268, 826, 10.1046/j.1432-1327.2001.01943.x · DOI
- Díaz, 2008, J. Phys. Chem. B, 112, 8412, 10.1021/jp803509h · DOI
- Vasilevskaya, 2015, J. Comput. Chem., 36, 1621, 10.1002/jcc.23977 · DOI
- Matthews, 1988, Acc. Chem. Res., 21, 333, 10.1021/ar00153a003 · DOI · Paper page
- Bertini, 2006, Angew. Chem., Int. Ed., 45, 7952, 10.1002/anie.200603100 · DOI
- Solomon, 2007, Proc. Natl. Acad. Sci. U. S. A., 104, 4931, 10.1073/pnas.0700066104 · DOI
- Crabbe, 1994, Biochemistry, 33, 6684, 10.1021/bi00187a039 · DOI
- Cha, 1997, Biochemistry, 36, 16019, 10.1021/bi972223g · DOI
- Fernandez-Catalan, 1998, EMBO J., 17, 5238, 10.1093/emboj/17.17.5238 · DOI · Paper page
- Grossman, 2010, Biochemistry, 49, 6184, 10.1021/bi902141x · DOI · Paper page
- Nar, 2001, J. Mol. Biol., 312, 743, 10.1006/jmbi.2001.4953 · DOI
- Gupta, 2007, Chem. Rev., 107, 3042, 10.1021/cr030448t · DOI
- Grossman, 2011, Nat. Struct. Mol. Biol., 18, 1102, 10.1038/nsmb.2120 · DOI
- Decaneto, 2015, Photochem. Photobiol. Sci., 14, 300, 10.1039/C4PP00297K · DOI
- Neumann, 2004, Anal. Biochem., 328, 166, 10.1016/j.ab.2003.12.035 · DOI
- Ogata, 2014, Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun., 70, 232, 10.1107/S2053230X13034857 · DOI
- Kabsch, 2010, Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, 125, 10.1107/S0907444909047337 · DOI · Paper page
- Vagin, 2010, Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, 22, 10.1107/S0907444909042589 · DOI
- Adams, 2010, Acta Crystallogr., Sect. D: Biol. Crystallogr., 66, 213, 10.1107/S0907444909052925 · DOI · Paper page
- Lovell, 2003, Proteins, 50, 437, 10.1002/prot.10286 · DOI · Paper page
- Holmquist, 1973, Biochemistry, 12, 4409, 10.1021/bi00746a018 · DOI
- Nalepa, 2013, Protein Expression Purif., 88, 33, 10.1016/j.pep.2012.11.004 · DOI
- Reijerse, 2012, J. Magn. Reson., 214, 237, 10.1016/j.jmr.2011.11.011 · DOI
- Krewald, 2015, Chem. Sci., 6, 1676, 10.1039/C4SC03720K · DOI
- Tochowicz, 2007, J. Mol. Biol., 371, 989, 10.1016/j.jmb.2007.05.068 · DOI
- Humphrey, 1996, J. Mol. Graphics, 14, 33, 10.1016/0263-7855(96)00018-5 · DOI · Paper page
- MacKerell, 1998, J. Phys. Chem. B, 102, 3586, 10.1021/jp973084f · DOI
- Jorgensen, 1983, J. Chem. Phys., 79, 926, 10.1063/1.445869 · DOI
- Ryckaert, 1977, J. Comput. Phys., 23, 327, 10.1016/0021-9991(77)90098-5 · DOI
- Phillips, 2005, J. Comput. Chem., 26, 1781, 10.1002/jcc.20289 · DOI · Paper page
- Becke, 1993, J. Chem. Phys., 98, 5648, 10.1063/1.464913 · DOI · Paper page
- Stephens, 1994, J. Phys. Chem., 98, 11623, 10.1021/j100096a001 · DOI
- Rassolov, 1998, J. Chem. Phys., 109, 1223, 10.1063/1.476673 · DOI
- Sherwood, 2003, THEOCHEM, 632, 1, 10.1016/S0166-1280(03)00285-9 · DOI
- Metz, 2014, Wiley Interdiscip. Rev.: Comput. Mol. Sci., 4, 101
- Ahlrichs, 1989, Chem. Phys. Lett., 162, 165, 10.1016/0009-2614(89)85118-8 · DOI
- Smith, 1996, J. Mol. Graphics, 14, 136, 10.1016/S0263-7855(96)00043-4 · DOI
- Billeter, 2000, Phys. Chem. Chem. Phys., 2, 2177, 10.1039/a909486e · DOI
- Neese, 2011, Wiley Interdiscip. Rev.: Comput. Mol. Sci., 2, 73
- Staroverov, 2003, J. Chem. Phys., 119, 12129, 10.1063/1.1626543 · DOI
- Neese, 2002, Inorg. Chim. Acta, 337, 181, 10.1016/S0020-1693(02)01031-9 · DOI
- Pantazis, 2008, J. Chem. Theory Comput., 4, 908, 10.1021/ct800047t · DOI
- Weigend, 2005, Phys. Chem. Chem. Phys., 7, 3297, 10.1039/b508541a · DOI
- van Wüllen, 1998, J. Chem. Phys., 109, 392, 10.1063/1.476576 · DOI
- Angeli, 2002, J. Chem. Phys., 117, 9138, 10.1063/1.1515317 · DOI
- Angeli, 2006, Theor. Chem. Acc., 116, 434, 10.1007/s00214-006-0095-3 · DOI
- Hess, 1996, Chem. Phys. Lett., 251, 365, 10.1016/0009-2614(96)00119-4 · DOI
- English, 2001, J. Biol. Chem., 276, 42018, 10.1074/jbc.M107783200 · DOI · Paper page
- Woskowicz, 2013, J. Biol. Chem., 288, 35126, 10.1074/jbc.M113.496067 · DOI
- Lang, 2004, J. Mol. Biol., 336, 213, 10.1016/j.jmb.2003.12.022 · DOI · Paper page
- Nagase, 1996, Biopolymers, 40, 399, 10.1002/(SICI)1097-0282(1996)40:4<399::AID-BIP5>3.0.CO;2-R · DOI
- Bertini, 2003, Angew. Chem., Int. Ed. Engl., 42, 2673, 10.1002/anie.200350957 · DOI
- Devel, 2012, J. Biol. Chem., 287, 26647, 10.1074/jbc.M112.380782 · DOI
- Nuti, 2016, ChemMedChem, 11, 1626, 10.1002/cmdc.201600235 · DOI
- Belviso, 2013, Chem. Commun., 49, 5492, 10.1039/c3cc41278d · DOI
- Larrabee, 1997, J. Am. Chem. Soc., 119, 4182, 10.1021/ja963555w · DOI
- Maret, 1993, Methods Enzymol., 226, 52, 10.1016/0076-6879(93)26005-T · DOI
- B. Bennett , in Metals in Biology: Applications of High-Resolution EPR to Metalloenzymes , ed. G. Hanson and L. Berliner , Springer New York , New York, NY , 2010 , pp. 345–370 10.1007/978-1-4419-1139-1_10 · DOI
- Salowe, 1992, Biochemistry, 31, 4535, 10.1021/bi00134a001 · DOI
- Bertini, 2004, Angew. Chem., Int. Ed., 43, 2254, 10.1002/anie.200353453 · DOI
- N. Cox , A.Nalepa , M.-E.Pandelia , W.Lubitz and A.Savitsky , in Method Enzymol. , ed. Z. Q. Peter and W. Kurt , Academic Press , 2015 , vol. 563, pp. 211–249
- Bertini, 2005, Proc. Natl. Acad. Sci. U. S. A., 102, 5334, 10.1073/pnas.0407106102 · DOI
- Hajduk, 1997, J. Am. Chem. Soc., 119, 5818, 10.1021/ja9702778 · DOI
- Vallee, 1968, Proc. Natl. Acad. Sci. U. S. A., 59, 498, 10.1073/pnas.59.2.498 · DOI
- Tonello, 1997, Biochem. J., 322, 507, 10.1042/bj3220507 · DOI
- Sabel, 2011, Biochem. Biophys. Res. Commun., 416, 106, 10.1016/j.bbrc.2011.11.005 · DOI
- Larrabee, 2004, J. Am. Chem. Soc., 126, 12316, 10.1021/ja0485006 · DOI
- Bicknell, 1986, Biochemistry, 25, 4219, 10.1021/bi00363a008 · DOI
- Brown, 1991, J. Biol. Chem., 266, 1597, 10.1016/S0021-9258(18)52336-X · DOI
- Bjarnason, 1983, Biochemistry, 22, 3770, 10.1021/bi00285a009 · DOI
- Rose, 1984, J. Biol. Chem., 259, 4405, 10.1016/S0021-9258(17)43061-4 · DOI
- Baldwin, 1980, J. Inorg. Biochem., 13, 189, 10.1016/S0162-0134(00)80068-9 · DOI
- Holmquist, 1975, Biochemistry, 14, 1454, 10.1021/bi00678a016 · DOI
- Stocker, 1988, Biochemistry, 27, 5026, 10.1021/bi00414a012 · DOI
- Holmquist, 1974, J. Biol. Chem., 249, 4601, 10.1016/S0021-9258(19)42460-5 · DOI
- Vallee, 1971, Biochemistry, 10, 2466, 10.1021/bi00789a006 · DOI
- Maret, 1979, Eur. J. Biochem., 98, 501, 10.1111/j.1432-1033.1979.tb13211.x · DOI
- Sytkowski, 1978, Biochemistry, 17, 2850, 10.1021/bi00607a024 · DOI
- Latt, 1971, Biochemistry, 10, 4263, 10.1021/bi00799a017 · DOI
- Cotton, 1962, J. Am. Chem. Soc., 84, 872, 10.1021/ja00864a045 · DOI
- Morpeth, 1982, Biochemistry, 21, 1318, 10.1021/bi00535a033 · DOI
- Vasak, 1981, Proc. Natl. Acad. Sci. U. S. A., 78, 6709, 10.1073/pnas.78.11.6709 · DOI
- Maret, 1989, Biochemistry, 28, 9944, 10.1021/bi00452a011 · DOI
- Bertini, 2012, FEBS Lett., 586, 557, 10.1016/j.febslet.2011.09.020 · DOI
- L. Banci , A.Bencini , C.Benelli , D.Gatteschi and C.Zanchini , Structures versus Special Properties , Springer Berlin Heidelberg , Berlin, Heidelberg , 1982 , pp. 37–86 10.1007/BFb0111296 · DOI
- Kuo, 1985, J. Am. Chem. Soc., 107, 5255, 10.1021/ja00304a036 · DOI
- Makinen, 1985, J. Am. Chem. Soc., 107, 5245, 10.1021/ja00304a035 · DOI
- Walsby, 2003, J. Am. Chem. Soc., 125, 7502, 10.1021/ja034589o · DOI
- Cox, 2013, Mol. Phys., 111, 2788, 10.1080/00268976.2013.830783 · DOI
- Tan, 1993, J. Chem. Phys., 98, 5147, 10.1063/1.464917 · DOI
- Shafaat, 2014, J. Am. Chem. Soc., 136, 13399, 10.1021/ja507435t · DOI
- R. P. Verma , in Matrix Metalloproteinase Inhibitors: Specificity of Binding and Structure-Activity Relationships , ed. P. S. Gupta , Springer Basel, Basel , 2012 , pp. 137–176 10.1007/978-3-0348-0364-9_5 · DOI
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Sorted by citations
Wang, M., Alabi, A., Gu, H.-M., Gill, G., Zhang, Z., Jarad, S., Xia, X.-D., Shen, Y., Wang, G.-Q., & Zhang, D.-W. (2022) · Frontiers in Cardiovascular Medicine · doi:10.3389/fcvm.2022.917238 · Cited by 13
Metadata
- Authors
- Decaneto, E., Vasilevskaya, T., Kutin, Y., Ogata, H., Grossman, M., Sagi, I., Havenith, M., Lubitz, W., Thiel, W., & Cox, N.
- Affiliations
- Max Planck Institute for Chemical Energy Conversion
- Max-Planck-Institut für Kohlenforschung
- Department of Physical Chemistry II
- Department of Biological Regulation
- Venue
- Physical Chemistry Chemical Physics
- Publisher
- Royal Society of Chemistry (RSC)
- Published
- 2017
- Volume
- 19
- Issue
- 45
- Pages
- 30316-30331
- ISSN
- 1463-9076
- 1463-9084
- Cited by
- 23
- References
- 0
- Language
- en
- Funders
- Israel Science Foundation
- United States-Israel Binational Science Foundation
- Weizmann Institute of Science (National Postdoctoral Award Program for Advancing)
- Max-Planck-Gesellschaft
- H2020 European Research Council (Advanced Grant 695437 THz-Calorimetry)
- Alexander von Humboldt-Stiftung
- Australian Research Council (FT140100834)
- Deutsche Forschungsgemeinschaft (Cluster of Excellence RESOLV (EXC 1069))
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