The DOI matches its Crossref record; 52 of the 52 references it cites were found in a registry or an index.
Gene expression regulation in trypanosomatids
Abstract
Trypanosomatids are protozoan micro-organisms that cause serious health problems in humans and domestic animals. In addition to their medical relevance, these pathogens have novel biological structures and processes. From nuclear DNA transcription to mRNA translation, trypanosomes use unusual mechanisms to control gene expression. For example, transcription by RNAPII (RNA polymerase II) is polycistronic, and only a few transcription initiation sites have been identified so far. The sequences present in the polycistronic units code for proteins having unrelated functions, that is, not involved in a similar metabolic pathway. Owing to these biological constraints, these micro-organisms regulate gene expression mostly by post-transcriptional events. Consequently, the function of proteins that recognize RNA elements preferentially at the 3′ UTR (untranslated region) of transcripts is central. It was recently shown that mRNP (messenger ribonucleoprotein) complexes are organized within post-transcriptional operons to co-ordinately regulate gene expression of functionally linked transcripts. In the present chapter we will focus on particular characteristics of gene expression in the so-called TriTryp parasites: Trypanosoma cruzi, Trypanosoma brucei and Leishmania major.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“There are virtually no data on the sequence preferences of RBPs in most organisms”
From A compendium of RNA-binding motifs for decoding gene regulation (2013) · cites this paper as [6]
Citations
Cites
The Genome of the African Trypanosome Trypanosoma brucei
Berriman, M., Ghedin, E., Hertz‐Fowler, C., Blandin, G., Renauld, H., Bartholomeu, D. C., Lennard, N. J., Caler, E. V., Hamlin, N. E., Haas, B. J., et al. (2005) · Science · doi:10.1126/science.1112642 · Cited by 1,634
The Genome Sequence of Trypanosoma cruzi , Etiologic Agent of Chagas Disease
El-Sayed, N. M., Myler, P. J., Bartholomeu, D. C., Nilsson, D., Aggarwal, G., Tran, A.-N., Ghedin, E., Worthey, E. A., Delcher, A. L., Blandin, G., et al. (2005) · Science · doi:10.1126/science.1112631 · Cited by 1,394
Self-citationThe Genome of the Kinetoplastid Parasite, Leishmania major
Ivens, A. C., Peacock, C. S., Worthey, E. A., Murphy, L., Aggarwal, G., Berriman, M., Sisk, E. C., Rajandream, M., Adlem, E., Aert, R., et al. (2005) · Science · doi:10.1126/science.1112680 · Cited by 1,347
Self-citationRNA regulons: coordination of post-transcriptional events
Keene, J. D. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2111 · Cited by 1,321
Comparative Genomics of Trypanosomatid Parasitic Protozoa
El-Sayed, N. M., Myler, P. J., Blandin, G., Berriman, M., Crabtree, J., Aggarwal, G., Caler, E. V., Renauld, H., Worthey, E. A., Hertz‐Fowler, C., et al. (2005) · Science · doi:10.1126/science.1112181 · Cited by 832
Barrett, M. P., Burchmore, R., Stich, A., Lázzari, J. O., Frasch, A. C. C., Cazzulo, J. J., & Krishna, S. (2003) · The Lancet · doi:10.1016/s0140-6736(03)14694-6 · Cited by 673
Self-citationThe Control of mRNA Decapping and P-Body Formation
Franks, T. M., & Lykke‐Andersen, J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.11.001 · Cited by 419
Post-transcriptional regulation of gene expression in trypanosomes and leishmanias
CLAYTON, C. E., & Shapira, M. (2007) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2007.07.007 · Cited by 414
Polysomes, P bodies and stress granules: states and fates of eukaryotic mRNAs
Balagopal, V., & Parker, R. (2009) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2009.03.005 · Cited by 401
Complex management: RNA editing in trypanosomes
Stuart, K. D., Schnaufer, A. C., Ernst, N. L., & Panigrahi, A. K. (2005) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2004.12.006 · Cited by 367
trans and cis Splicing in Trypanosomatids: Mechanism, Factors, and Regulation
Liang, X., Haritan, A., Uliel, S., & Michaeli, S. (2003) · Eukaryotic Cell · doi:10.1128/ec.2.5.830-840.2003 · Cited by 326
RNA interference in protozoan parasites
Ullu, E., Tschudi, C., & Chakraborty, T. (2004) · Cellular Microbiology · doi:10.1111/j.1462-5822.2004.00399.x · Cited by 294
Siegel, T. N., Hekstra, D. R., Wang, X., Dewell, S. B., & Cross, G. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq237 · Cited by 289
The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution
Kolev, N. G., Franklin, J. B., Carmi, S., Shi, H., Michaeli, S., & Tschudi, C. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001090 · Cited by 267
The Genome of the African Trypanosome
Donelson, J. E. (2005) · Kluwer Academic Publishers eBooks · doi:10.1007/0-306-46894-8_11 · Cited by 239
Retention and Loss of RNA Interference Pathways in Trypanosomatid Protozoans
Lye, L., Owens, K. L., Shi, H., Murta, S. M. F., Vieira, A. C., Turco, S. J., Tschudi, C., Ullu, E., & Beverley, S. M. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001161 · Cited by 229
Developmental regulation of gene expression in trypanosomatid parasitic protozoa
Haile, S., & Papadopoulou, B. (2007) · Current Opinion in Microbiology · doi:10.1016/j.mib.2007.10.001 · Cited by 222
Switching trypanosome coats: what's in the wardrobe?
Taylor, J. W., & Rudenko, G. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.08.003 · Cited by 193
Nilsson, D., Gunasekera, K., Mani, J., Østerås, M., Farinelli, L., Bærlocher, L., Roditi, I. J., & Ochsenreiter, T. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001037 · Cited by 183
Krämer, S., Queiroz, R., Ellis, L., Webb, H., Hoheisel, J. D., CLAYTON, C. E., & Carrington, M. (2008) · Journal of Cell Science · doi:10.1242/jcs.031823 · Cited by 160
Furger, A., Schürch, N., Kurath, U., & Roditi, I. J. (1997) · Molecular and Cellular Biology · doi:10.1128/mcb.17.8.4372 · Cited by 154
Rochette, A., Raymond, F., Ubeda, J.-M., Smith, M. A., Messier, N., Boisvert, S., Rigault, P., Corbeil, J., Ouellette, M., & Papadopoulou, B. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-255 · Cited by 144
The steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi
Minning, T. A., Weatherly, D. B., Atwood, J., Orlando, R., & Tarleton, R. L. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-370 · Cited by 137
Noia, J. M. D., D’Orso, I., Sánchez, D. O., & Frasch, A. C. C. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.14.10218 · Cited by 134
Self-citationRNA-Binding Domain Proteins in Kinetoplastids: a Comparative Analysis
Gaudenzi, J. G. D., Frasch, A. C. C., & CLAYTON, C. E. (2005) · Eukaryotic Cell · doi:10.1128/ec.4.12.2106-2114.2005 · Cited by 131
Self-citationGene transcription in trypanosomes
Palenchar, J. B., & Bellofatto, V. (2006) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2005.12.008 · Cited by 129
Chromosome level assembly of the hybrid Trypanosoma cruzi genome
Weatherly, D. B., Boehlke, C., & Tarleton, R. L. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-255 · Cited by 126
Recruitment of mRNAs to cytoplasmic ribonucleoprotein granules in trypanosomes
Cassola, A., Gaudenzi, J. G. D., & Frasch, A. C. C. (2007) · Molecular Microbiology · doi:10.1111/j.1365-2958.2007.05833.x · Cited by 125
Self-citationEpigenetic regulation in African trypanosomes: a new kid on the block
Figueiredo, L. M., Cross, G., & Janzen, C. J. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2149 · Cited by 119
Bringaud, F., Müller-McNicoll, M., Cerqueira, G. C., Smith, M. A., Rochette, A., El-Sayed, N. M., Papadopoulou, B., & Ghedin, E. (2007) · PLoS Pathogens · doi:10.1371/journal.ppat.0030136 · Cited by 112
Unravelling the procyclin coat of Trypanosoma brucei
Roditi, I. J. (1998) · Molecular and Biochemical Parasitology · doi:10.1016/s0166-6851(97)00195-3 · Cited by 108
Krämer, S., Kimblin, N., & Carrington, M. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-283 · Cited by 105
Moya, S. M. F., & Estévez, A. M. (2010) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.6 · Cited by 86
Walrad, P. B., Paterou, A., Acosta-Serrano, Á., & Matthews, K. R. (2009) · PLoS Pathogens · doi:10.1371/journal.ppat.1000317 · Cited by 81
D’Orso, I., & Frasch, A. C. C. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m102120200 · Cited by 74
Self-citationRepetitive Elements in Genomes of Parasitic Protozoa
Wickstead, B., Ersfeld, K., & Keith Gull, B. (2003) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.67.3.360-375.2003 · Cited by 74
Coordinated gene expression by post-transcriptional regulons in African trypanosomes
Ouellette, M., & Papadopoulou, B. (2009) · Journal of Biology · doi:10.1186/jbiol203 · Cited by 64
Mobile genetic elements in protozoan parasites
Bhattacharya, S., Bakre, A. A., & Bhattacharya, A. (2002) · Journal of Genetics · doi:10.1007/bf02715903 · Cited by 61
Ruan, J., Arhin, G. K., Ullu, E., & Tschudi, C. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.21.9610-9618.2004 · Cited by 58
Changes in polysome profiles accompany trypanosome development
Brecht, M., & Parsons, M. (1998) · Molecular and Biochemical Parasitology · doi:10.1016/s0166-6851(98)00151-0 · Cited by 57
mRNA maturation by two-step trans-splicing/polyadenylation processing in trypanosomes
Jäger, A. V., Gaudenzi, J. G. D., Cassola, A., D’Orso, I., & Frasch, A. C. C. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611125104 · Cited by 55
Self-citationDroll, D., Archer, S. K., Fenn, K., Delhi, P., Matthews, K. R., & CLAYTON, C. E. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.02.018 · Cited by 54
Gaudenzi, J. G. D., D’Orso, I., & Frasch, A. C. C. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m301756200 · Cited by 54
Self-citationRNA-binding proteins and mRNA turnover in trypanosomes
D’Orso, I., Gaudenzi, J. G. D., & Frasch, A. C. C. (2003) · Trends in Parasitology · doi:10.1016/s1471-4922(03)00035-7 · Cited by 54
Self-citationNoé, G., Gaudenzi, J. G. D., & Frasch, A. C. C. (2008) · BMC Molecular Biology · doi:10.1186/1471-2199-9-107 · Cited by 50
Self-citationBorst, P. (1991) · Trends in Genetics · doi:10.1016/0168-9525(91)90374-y · Cited by 48
Milone, J. (2002) · Nucleic Acids Research · doi:10.1093/nar/gkf521 · Cited by 39
Borst, P. (1991) · Trends in Genetics · doi:10.1016/0168-9525(91)90091-4 · Cited by 39
Trypanosoma cruzi: Analysis of the complete PUF RNA-binding protein family
Caro, F., Bercovich, N., Atorrasagasti, C., Levin, M. J., & Vázquez, M. (2006) · Experimental Parasitology · doi:10.1016/j.exppara.2005.12.015 · Cited by 36
Chromatin-based transcriptional punctuation: Figure 1.Preprint
Talbert, P. B., & Henikoff, S. (2009) · Genes & Development · doi:10.1101/gad.1806409 · Cited by 28
Dreesen, O., & Cross, G. (2006) · Eukaryotic Cell · doi:10.1128/ec.00059-06 · Cited by 26
Holzer, T. R., Mishra, K. K., LeBowitz, J. H., & FORNEY, J. D. (2007) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2007.10.001 · Cited by 21
Flagged first, then by citations
Research works printed but not linked: 1
- Hendriks, 2007, Post-transcriptional control of gene expression in African trypanosomes, 209
Cited by
Sorted by citations
A compendium of RNA-binding motifs for decoding gene regulation
Ray, D., Kazan, H., Cook, K. B., Weirauch, M. T., Najafabadi, H. S., Li, X., Gueroussov, S., Albu, M., Zheng, H., Yang, A., et al. (2013) · Nature · doi:10.1038/nature12311 · Cited by 1,480
Drug resistance and treatment failure in leishmaniasis: A 21st century challenge
Ponte‐Sucre, A., Gamarro, F., Dujardin, J., Barrett, M. P., López‐Vélez, R., García‐Hernández, R., Pountain, A. W., Mwenechanya, R., & Papadopoulou, B. (2017) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0006052 · Cited by 971
Bayer‐Santos, E., Aguilar-Bonavides, C., Rodrigues, S. P., Cordero, E. M., Marques, A. F., Varela-Ramı́rez, A., Choi, H., Yoshida, N., da Silveira, J. F., & de Almeida, I. C. (2012) · Journal of Proteome Research · doi:10.1021/pr300947g · Cited by 263
Trypanosomatids Are Much More than Just Trypanosomes: Clues from the Expanded Family Tree
Lukeš, J., Butenko, A., Hashimi, H., Maslov, D. A., Votýpka, J., & Yurchenko, V. (2018) · Trends in Parasitology · doi:10.1016/j.pt.2018.03.002 · Cited by 208
Dumetz, F., Imamura, H., Sanders, M. J., Šeblová, V., Myšková, J., Pescher, P., Vanaerschot, M., Meehan, C. J., Cuypers, B., Muylder, G. D., et al. (2017) · mBio · doi:10.1128/mbio.00599-17 · Cited by 202
Metadata
- Authors
- De Gaudenzi, J. G., Noé, G., Campo, V. A., Frasch, A. C., & Cassola, A.
- Affiliations
- Instituto de Investigaciones Biotecnológicas – Instituto Tecnológico Chascomús, UNSAM-CONICET, Av. Gral. Paz 5445, INTI, Edificio 24, 1650 San Martín, Provincia de Buenos Aires, Argentina.
- Consejo Nacional de Investigaciones Científicas y Técnicas (AR)
- Venue
- Essays in Biochemistry
- Publisher
- Portland Press Ltd.
- Published
- 2011-10-24
- Volume
- 51
- Pages
- 31-46
- ISSN
- 0071-1365 (ISSN-L)
- 1744-1358
- OpenAlex
- W2292320336
- Cited by
- 116
- References
- 51
- Citations by year
- 2026: 6 · 2025: 9 · 2024: 8 · 2023: 4 · 2022: 4 · 2021: 5 · 2020: 7 · 2019: 8 · 2018: 12 · 2017: 8 · 2016: 9 · 2015: 9 · 2014: 5 · 2013: 18 · 2012: 4
- FWCI
- 1.01
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Essays in Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of Allergy and Infectious Diseases (AI0600645)
- Fogarty International Center (D43TW007888)
- Topics
- Health Sciences › Medicine › Epidemiology › Trypanosoma species research and implications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Research on Leishmaniasis Studies
- Keywords
- gene expression regulation, trypanosomatids, polycistronic transcription, RNA polymerase II, post-transcriptional regulation, 3' untranslated region, RNA-binding proteins, messenger ribonucleoprotein complexes, Trypanosoma cruzi, Trypanosoma brucei, Leishmania major
- MeSH terms
- Animals, Chromatin, Gene Expression Regulation, Ribonucleoproteins, RNA Polymerase II, RNA Processing, Post-Transcriptional, RNA, Messenger, Transcription, Genetic, Trypanosoma, DNA, Protozoan, RNA-Binding Proteins, Genome, 3' Untranslated Regions
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review