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Structural and mechanistic insights into bisphenols action provide guidelines for risk assessment and discovery of bisphenol A substitutes
Open accessAbstract
Bisphenol A (BPA) is an industrial compound and a well known endocrine-disrupting chemical with estrogenic activity. The widespread exposure of individuals to BPA is suspected to affect a variety of physiological functions, including reproduction, development, and metabolism. Here we report that the mechanisms by which BPA and two congeners, bisphenol AF and bisphenol C (BPC), bind to and activate estrogen receptors (ER) α and β differ from that used by 17β-estradiol. We show that bisphenols act as partial agonists of ERs by activating the N-terminal activation function 1 regardless of their effect on the C-terminal activation function 2, which ranges from weak agonism (with BPA) to antagonism (with BPC). Crystallographic analysis of the interaction between bisphenols and ERs reveals two discrete binding modes, reflecting the different activities of compounds on ERs. BPA and 17β-estradiol bind to ERs in a similar fashion, whereas, with a phenol ring pointing toward the activation helix H12, the orientation of BPC accounts for the marked antagonist character of this compound. Based on structural data, we developed a protocol for in silico evaluation of the interaction between bisphenols and ERs or other members of the nuclear hormone receptor family, such as estrogen-related receptor γ and androgen receptor, which are two known main targets of bisphenols. Overall, this study provides a wealth of tools and information that could be used for the development of BPA substitutes devoid of nuclear hormone receptor-mediated activity and more generally for environmental risk assessment.
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“In these experiments, the protein data bank (PDB) entries 3OLL, 3UUD and 2AM9 were used for ERβ, ERα and AR, respectively [84,85,86]. These crystal structures were specifically selected as they are in ligand-bound states and therefore their conformations would allow ligand docking into the ligand-binding site.”
From Phytoecdysteroids and Anabolic Effect of Atriplex dimorphostegia: UPLC-PDA-MS/MS Profiling, In Silico and In Vivo Models (2023) · cites this paper as [86]
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Potential Mechanisms of Bisphenol A (BPA) Contributing to Human Disease
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“As an illustration, we mention here the recent crystallographic analysis of the interaction between the estrogen receptors and bisphenols, which are well-documented endocrine disruptors with estrogenic activity.(46) The crystal structures of ERs in complex with BPA (bisphenol A) and its chemical derivatives reveal two…”
BackgroundFull antagonism of the estrogen receptor without a prototypical ligand side chain
Srinivasan, S., Nwachukwu, J. C., Bruno, N. E., Dharmarajan, V., Goswami, D., Kastrati, I., Novick, S. J., Nowak, J., Cavett, V. J., Zhou, H., et al. (2016) · Nature Chemical Biology · doi:10.1038/nchembio.2236 · Cited by 66
Pavlin, M., Spinello, A., Pennati, M., Zaffaroni, N., Gobbi, S., Bisi, A., Colombo, G., & Magistrato, A. (2018) · Scientific Reports · doi:10.1038/s41598-017-17364-4 · Cited by 69
Hall, J. M., & Greco, C. W. (2019) · Cells · doi:10.3390/cells9010013 · Cited by 66
“EDCs are known to differentially associate with transcriptional coactivators compared with estradiol or other ER-alpha and ER-beta ligands [34,35], and thus, the degree of agonist/antagonist activity of specific EDCs on a particular receptor may in part reflect the degree of cofactor association.”
BackgroundWang, H., Tang, Z., Liu, Z., Zeng, F., Zhang, J., & Dang, Z. (2022) · Environmental Science and Pollution Research · doi:10.1007/s11356-021-17647-4 · Cited by 66
“To fulfill the market demand, bisphenol analogues with chemical structures similar to BPA have been widely used, and some of them are gradually being used as substitutes for BPA (Chen et al. 2016; Delfosse et al. 2012; Liao et al. 2012; Xue et al. 2015; Banderakhshan et al. 2022).”
BackgroundIn Silico Predictions of Endocrine Disruptors Properties
Schneider, M., Pons, J.-L., Labesse, G., & Bourguet, W. (2019) · Endocrinology · doi:10.1210/en.2019-00382 · Cited by 69
Emerging concepts and opportunities for endocrine disruptor screening of the non-EATS modalities
Martyniuk, C. J., Martínez, R., Navarro‐Martín, L., Kamstra, J. H., Schwendt, A., Reynaud, S., & Chalifour, L. E. (2021) · Environmental Research · doi:10.1016/j.envres.2021.111904 · Cited by 65
Selective Human Estrogen Receptor Partial Agonists (ShERPAs) for Tamoxifen-Resistant Breast Cancer
Xiong, R., Patel, H., Gutgesell, L. M., Zhao, J., Delgado-Rivera, L., Pham, T. D., Zhao, H., Carlson, K. E., Martin, T. A., Katzenellenbogen, J. A., et al. (2015) · Journal of Medicinal Chemistry · doi:10.1021/acs.jmedchem.5b01276 · Cited by 63
Tan, H., Chen, Q., Hong, H., Benfenati, E., Gini, G. C., Zhang, X., Yu, H., & Shi, W. F. (2021) · Environmental Science & Technology · doi:10.1021/acs.est.1c04997 · Cited by 59
Cao, H., Wang, F., Liang, Y., Wang, H., Zhang, A., & Song, M. (2017) · Archives of Toxicology · doi:10.1007/s00204-017-2011-0 · Cited by 63
“According to the above docking results for the ligand-ERα complex, the NR box2 peptide (KILHRLLQE) coordinates (the chain C of 3UUD) were introduced manually into shallow activation function 2 (AF2) surfaces of ERα, which is representative of short LxxLL motifs of SRC-1 co-activators in breast cancer cells (Delfosse e…”
BackgroundMethodResultInfluentialBisphenol-A disturbs hormonal levels and testis mitochondrial activity, reducing male fertility
Ryu, D., Pang, W., Adegoke, E. O., Rahman, M. S., Park, Y.-J., & Pang, M. (2023) · Human Reproduction Open · doi:10.1093/hropen/hoad044 · Cited by 60
“It has been well-established that BPA binds with ER a and ER b (Delfosse et al. , 2012; Kuiper et al. , 1998).”
BackgroundXu, X., He, Y., Song, C., Ke, X.-F., Fan, S.-J., Peng, W., Tan, R., Kawata, M., Matsuda, K., Pan, B.-X., et al. (2014) · Hippocampus · doi:10.1002/hipo.22336 · Cited by 59
“Mechanisms of how BPA exerts these actions are not well understood but may involve its estrogen-like ability to bind estrogen receptor (ER; Papaconstantinou et al., 2000, 2001; Delfosse et al., 2012), which is postulated to disrupt the normal ER signaling in the target neurons.”
BackgroundInfluentialIn silico methods in the discovery of endocrine disrupting chemicals
Vuorinen, A., Odermatt, A., & Schuster, D. (2013) · The Journal of Steroid Biochemistry and Molecular Biology · doi:10.1016/j.jsbmb.2013.04.009 · Cited by 58
Neuroendocrine and behavioral effects of maternal exposure to oral bisphenol A in female mice
Naulé, L., Picot, M., Martini, M., Parmentier, C., Hardin‐Pouzet, H., Keller, M., Franceschini, I., & Mhaouty‐Kodja, S. (2014) · Journal of Endocrinology · doi:10.1530/joe-13-0607 · Cited by 63
“Known for its estrogenic activity, BPA binds to estrogen receptors (ERs) with a lower affinity than that of estradiol (E 2 ) (Dodds & Lawson 1936) and acts as a partial agonist (Delfosse et al .”
BackgroundAshfaq, M. A., Sun, Q., Zhang, H., Li, Y., Wang, Y., Li, M., Lv, M., Liao, X., & Yu, C. (2018) · Journal of Hazardous Materials · doi:10.1016/j.jhazmat.2018.06.022 · Cited by 58
Xiao, X., Li, J., Yu, T., Zhou, L., Fan, X., Xiao, H., Wang, Y., Yang, L., Lv, J., Jia, X., et al. (2018) · Environmental Pollution · doi:10.1016/j.envpol.2018.07.115 · Cited by 58
Huang, Z. W., Zhao, J., Zhang, C., Rao, W.-L., Liang, G., Zhang, H., Liu, Y.-H., Guan, Y., Zhang, H., & Ying, G. (2021) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2021.148269 · Cited by 59
Tu, M., Zheng, X., Liu, P., Wang, S., Yan, Z., Sun, Q., & Liu, X. (2020) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2020.142959 · Cited by 57
Maruyama, K., Nakamura, M., Tomoshige, S., Sugita, K., Makishima, M., Hashimoto, Y., & Ishikawa, M. (2013) · Bioorganic & Medicinal Chemistry Letters · doi:10.1016/j.bmcl.2013.05.067 · Cited by 57
Zhuang, S., Zhang, C., & Liu, W. (2014) · Chemical Research in Toxicology · doi:10.1021/tx500232b · Cited by 55
Conley, J. M., Hannas, B. R., Furr, J., Wilson, V. S., & Gray, L. E. (2016) · Toxicological Sciences · doi:10.1093/toxsci/kfw134 · Cited by 55
“…our current observations, in vitro studies on the ER binding affinity (Blair et al., 2000) and ER transcriptional activation and cell proliferation (Delfosse et al., 2012) activities of BPC have reported this compound to be more potent than other BPA analogues, as well as most other environmental…”
BackgroundMorales, M., de la Fuente, M., & Martín-Folgar, R. (2020) · Environmental Pollution · doi:10.1016/j.envpol.2020.114806 · Cited by 54
Gelin, M., Delfosse, V., Allemand, F., Hoh, F., Sallaz-Damaz, Y., Pirocchi, M., Bourguet, W., Ferrer, J.-L., Labesse, G., & Guichou, J. (2015) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s1399004715010342 · Cited by 54
“This result is of importance as nuclear receptors are the targets of about 20% of currently used drugs and of numerous environmental pollutants (Delfosse et al., 2012), the mode of binding of which still has to be deciphered for the vast majority.”
BackgroundZhu, Z., Zhang, Q., Xiao, X., Sun, F., Zuo, X., & Nan, J. (2020) · Chemical Engineering Journal · doi:10.1016/j.cej.2020.126543 · Cited by 54
Role of Bottle Feeding in the Etiology of Hypertrophic Pyloric Stenosis
McAteer, J. P., Ledbetter, D. J., & Goldin, A. B. (2013) · Archives of Pediatrics and Adolescent Medicine · doi:10.1001/jamapediatrics.2013.2857 · Cited by 53
Predictive features of ligand‐specific signaling through the estrogen receptor
Nwachukwu, J. C., Srinivasan, S., Zheng, Y., Wang, S., Min, J., Dong, C., Liao, Z., Nowak, J., Wright, N. A., Houtman, R., et al. (2016) · Molecular Systems Biology · doi:10.15252/msb.20156701 · Cited by 53
“…2016 The Authors Molecular Systems Biology 12: 864 | 2016 ERa-Y537S LBDs, demonstrating again that this surface mutation stabilizes h12 dynamics to facilitate crystallization without changing ligand binding (Appendix Fig S1A and B) (Nettles et al, 2008; Bruning et al, 2010; Delfosse et al, 2012).”
BackgroundLee, S., & Barron, M. G. (2017) · PLoS ONE · doi:10.1371/journal.pone.0169607 · Cited by 53
Stillwater, B. J., Bull, A., Romagnolo, D. F., Neumayer, L. A., Donovan, M. G., & Selmin, O. I. (2020) · Frontiers in Nutrition · doi:10.3389/fnut.2020.581388 · Cited by 52
“Excellent reviews of biochemical mechanisms of actions of BPA are available elsewhere (22).”
BackgroundCoexposure to Phytoestrogens and Bisphenol A Mimics Estrogenic Effects in an Additive Manner
Katchy, A., Pinto, C. L., Jonsson, P., Nguyen-Vu, T., Pandelova, M. E., Riu, A., Schramm, K., Samarov, D. V., Gustafsson, J.-Α., Bondesson, M., et al. (2013) · Toxicological Sciences · doi:10.1093/toxsci/kft271 · Cited by 55
“(Delfosse et al., 2012), reaching a maximal activation of only 70-80% relative to E2 (Figure 1A”
BackgroundNie, Z.-J., Guo, Q., Xia, H., Song, M.-M., Qiu, Z., Fan, S.-T., Chen, Z., Zhang, S., Zhang, S., & Li, B. (2020) · Journal of environmental chemical engineering · doi:10.1016/j.jece.2020.104749 · Cited by 52
Selectivity of natural, synthetic and environmental estrogens for zebrafish estrogen receptors
Pinto, C. L., Grimaldi, M., Boulahtouf, A., Pakdel, F., Brion, F., Aı̈t-Aı̈ssa, S., Cavaillès, V., Bourguet, W., Gustafsson, J.-Α., Bondesson, M., et al. (2014) · Toxicology and Applied Pharmacology · doi:10.1016/j.taap.2014.07.020 · Cited by 51
“Similarly to human ERs (Delfosse et al., 2012), bisphenol A (BPA) acted as a partial agonist towards the 3 zfERs (Fig.”
BackgroundMethodInfluentialEstrogen and Bisphenol A Affect Male Rat Enamel Formation and Promote Ameloblast Proliferation
Jedeon, K., Loiodice, S., Marciano, C., Vinel, A., Lavier, M.-C. C., Berdal, A., & Babajko, S. (2014) · Endocrinology · doi:10.1210/en.2013-2161 · Cited by 51
“and ER with an equilibrium dissociation constant (Kd) of about 100 nM (17, 18, 19).”
BackgroundYang, X., Liu, H., Yang, Q., Liu, J., Chen, J., & Shi, L. (2016) · Chemosphere · doi:10.1016/j.chemosphere.2016.08.062 · Cited by 54
D’Arrigo, G., Gianquinto, E., Rossetti, G., Cruciani, G., Lorenzetti, S., & Spyrakis, F. (2021) · Molecules · doi:10.3390/molecules26061613 · Cited by 58
“Crystallographic pose of E2 (a), and docking poses of NRG (b) and RESV (c) in ERα (PDB ID 3uud [72]).”
InfluentialTakács, M., Petoukhov, M. V., Atkinson, R. A., Roblin, P., Ogi, F.-X., Demeler, B., Potier, N., Chebaro, Y., Dejaegere, A. P., Svergun, D. I., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0067810 · Cited by 49
“The existence of allosteric control in the binding of ligands and/or coregulators to homodimeric receptors is much more intriguing, and has already been suggested for homodimeric RAR and ER [37,39], whereby the binding of a ligand and/or a coregulator to one of the receptor subunit can impact on the binding of the lig…”
BackgroundAllosteric small molecule modulators of nuclear receptors
Meijer, F. A., de Gevel, I. A. L.-V., de Vries, R. M. J. M., & Brunsveld, L. (2019) · Molecular and Cellular Endocrinology · doi:10.1016/j.mce.2019.01.022 · Cited by 50
“For both RARβ and the estrogen receptor α (ERα) it was observed that in the homodimer complex, this asymmetry was altering the binding mode of the ligand, as revealed for example via two different poses of the same ligand in each the two monomers.(33,34) Furthermore, it has been reported that also in the absence of a…”
Metadata
- Authors
- Delfosse, V., Grimaldi, M., Pons, J.-L., Boulahtouf, A., le Maire, A., Cavailles, V., Labesse, G., Bourguet, W., & Balaguer, P.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Inserm (FR)
- Centre de Biochimie Structurale, Institut National de la Santé et de la Recherche Médicale U1054, Centre National de la Recherche Scientifique, Unité Mixte de Recherche 5048, Universités Montpellier 1 and 2, 34090 Montpellier, France; and
- Institut de Recherche en Cancérologie de Montpellier, Institut National de la Santé et de la Recherche Médicale U896, Centre Régional de Lutte contre le Cancer Val d’Aurelle Paul Lamarque, Université Montpellier 1, 34298 Montpellier, France
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2012-08-27
- Volume
- 109
- Issue
- 37
- Pages
- 14930-14935
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC3443136
- OpenAlex
- W2140633565
- Cited by
- 405
- References
- 45
- Citations by year
- 2026: 28 · 2025: 33 · 2024: 26 · 2023: 33 · 2022: 34 · 2021: 40 · 2020: 38 · 2019: 35 · 2018: 25 · 2017: 26 · 2016: 19 · 2015: 25 · 2014: 23 · 2013: 20
- FWCI
- 15.31
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- HAL (submittedVersion, other-oa)
- Topics
- Physical Sciences › Environmental Science › Health, Toxicology and Mutagenesis › Effects and risks of endocrine disrupting chemicals
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Endocrinology › Estrogen and related hormone effects
- Life Sciences › Pharmacology, Toxicology and Pharmaceutics › Drug Discovery › Computational Drug Discovery Methods
- Keywords
- bisphenol A, bisphenol AF, bisphenol C, estrogen receptor alpha, estrogen receptor beta, endocrine disruptors, partial agonists, estrogen receptor antagonism, crystal structure, estrogen-related receptor gamma, androgen receptor, nuclear receptors, BPA substitutes, risk assessment, virtual screening
- MeSH terms
- Bisphenol A Compounds, Animals, Benzhydryl Compounds, Cell Line, Chromatography, Gel, Crystallography, Dose-Response Relationship, Drug, Estradiol, Fluorescence Polarization, Humans, Luciferases, Models, Molecular, Phenols, Oncorhynchus mykiss, Receptors, Cytoplasmic and Nuclear, Reverse Transcriptase Polymerase Chain Reaction, Estrogen Receptor alpha, Estrogen Receptor beta, Endocrine Disruptors
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