Circadian clock-dependent and -independent rhythmic proteomes implement distinct diurnal functions in mouse liver

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Harmonics of Circadian Gene Transcription in Mammals

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The circadian dynamics of small nucleolar RNA in the mouse liver

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Circadian Control of Protein Synthesis

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Mining for novel candidate clock genes in the circadian regulatory network

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The PXDLS linear motif regulates circadian rhythmicity through protein–protein interactions

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Redox clocks: Time to rethink redox interventions

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Sugar sensor genes in the murine gastrointestinal tract display a cephalocaudal axis of expression and a diurnal rhythm

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Perturbed rhythmic activation of signaling pathways in mice deficient for Sterol Carrier Protein 2-dependent diurnal lipid transport and metabolism

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Disordered clock protein interactions and charge blocks turn an hourglass into a persistent circadian oscillator

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The Lineage Before Time: Circadian and Nonclassical Clock Influences on Development

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The Circadian Clock and Obesity

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Disruption of daily rhythms in gene expression: The importance of being synchronised

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In the Driver’s Seat

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Regulation of the Neuroligin-1 Gene by Clock Transcription Factors

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Circadian Analysis of the Mouse Cerebellum Proteome

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Label-free MS/MS analyses of the dinoflagellate Lingulodinium identifies rhythmic proteins facilitating adaptation to a diurnal LD cycle

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Deconstructing circadian disruption: Assessing the contribution of reduced peripheral oscillator amplitude on obesity and glucose intolerance in mice

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Only time will tell: the interplay between circadian clock and metabolism

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An Introduction to Circadian Endocrine Physiology: Implications for Exercise and Sports Performance

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Circadian period is compensated for repressor protein turnover rates in single cells

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What makes ribosomes tick?

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MICOP: Maximal information coefficient-based oscillation prediction to detect biological rhythms in proteomics data

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miRNA-mediated regulation of clock gene expression in men and women with colorectal cancer and possible consequences for disease management

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Processing Bodies Oscillate in Neuro 2A Cells

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Nutrient-sensitive protein O-GlcNAcylation shapes daily biological rhythms

Liu, X., & Chiu, J. C. (2022) · Open Biology · doi:10.1098/rsob.220215 · Cited by 9

Qualitative and Quantitative Proteomics Methods for the Analysis of the Anopheles gambiae Mosquito Proteome

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The circadian clock gene circuit controls protein and phosphoprotein rhythms in Arabidopsis thalianaPreprint

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The Biological Clock of Liver Metabolism in Metabolic Dysfunction-Associated Steatohepatitis Progression to Hepatocellular Carcinoma

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PERspectives on circadian cell biology

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Alterations in Circadian Rhythms, Sleep, and Physical Activity in COVID-19: Mechanisms, Interventions, and Lessons for the Future

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Loss of temporal coherence in the circadian metabolome across multiple tissues during ageing in mice

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Circadian influences on sudden cardiac death and cardiac electrophysiology

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Clock Regulation of Skin Regeneration in Stem Cell Aging

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Cost-effective circadian mechanism: rhythmic degradation of circadian proteins spontaneously emerges without rhythmic post-translational regulation

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Phosphorylation of GAPVD1 Is Regulated by the PER Complex and Linked to GAPVD1 Degradation

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Rhythmicity is linked to expression cost at the protein level but to expression precision at the mRNA level

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Circadian Proteomics Reassesses the Temporal Regulation of Metabolic Rhythms by Chlamydomonas Clock

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Effect of Chronopharmacology and Food on in Vivo Pharmacokinetic Profile of Mavacamten

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Sample Preparation for Phosphoproteomic Analysis of Circadian Time Series in Arabidopsis thaliana

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Temporal regulation of proteome profile in the fruit fly, Drosophila melanogaster

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Circadian Clocks and UPR: New Twists as the Story Unfolds

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Long-Term Continuous Light Exposure Affects Body Weight and Blood Glucose Associated with Inflammation in Female Rats

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Tales around the clock: Poly(A) tails in circadian gene expression

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A population-based human enCYCLOPedia for circadian medicinePreprint

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Circadian clock control of tRNA synthetases in Neurospora crassa

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Diurnal protein oscillation profiles in Drosophila head

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The Making and Breaking of RNAs: Dynamics of Rhythmic RNA Expression in Mammals

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Time to listen: circadian impact on auditory research

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Circadian gene expression in mouse renal proximal tubule

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The fine-tuned crosstalk between lysine acetylation and the circadian rhythm

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Circadian systems biology in Metazoa

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Lost in clocks: non‐canonical circadian oscillation discovered in Drosophila cells

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Pharmacogenomics and circadian rhythms as mediators of cardiovascular drug-drug interactions

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The Mechanisms and Physiological Consequences of Diurnal Hepatic Cell Size Fluctuations: A Brief Review.

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Differential Effects of Cocaine and Morphine on the Diurnal Regulation of the Mouse Nucleus Accumbens Proteome

Ketchesin, K. D., Becker‐Krail, D. D., Xue, X., Wilson, R. S., Lam, T. T., Williams, K. R., Nairn, A. C., Tseng, G. C., & Logan, R. W. (2023) · Journal of Proteome Research · doi:10.1021/acs.jproteome.3c00126 · Cited by 5

Regulation of Cutaneous Stress Response Pathways by the Circadian Clock: From Molecular Pathways to Therapeutic Opportunities

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Achilles -Mediated and Sex-Specific Regulation of Circadian mRNA Rhythms in Drosophila

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The Liver Clock Tunes Transcriptional Rhythms in Skeletal Muscle to Regulate Mitochondrial Function

Sica, V., Sato, T., Tsialtas, I., Hernandez, S., Chen, S., Baldi, P., Muñoz‐Cánoves, P., Sassone‐Corsi, P., Koronowski, K. B., & Smith, J. G. (2026) · Journal of Biological Rhythms · doi:10.1177/07487304251386926 · Cited by 4

Circadian ribosome profiling reveals a role for the Period2 upstream open reading frame in sleep

Millius, A., Yamada, R. G., Fujishima, H., Maeda, K., Standley, D. M., Sumiyama, K., Perrin, D., & Ueda, H. R. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2214636120 · Cited by 4

Computational Identification of Master Regulators Influencing Trypanotolerance in Cattle

Rajavel, A., Schmitt, A. O., & Gültaş, M. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms22020562 · Cited by 4

CNOT1 regulates circadian behaviour through Per2 mRNA decay in a deadenylation-dependent manner

Mohamed, H. M. A., Takahashi, A., Nishijima, S., Adachi, S., Murai, I., Okamura, H., & Yamamoto, T. S. (2022) · RNA Biology · doi:10.1080/15476286.2022.2071026 · Cited by 4

BMAL1 mediates sex-specific circadian regulation of cardiac ion channels and temporal arrhythmia vulnerability

Delisle, B. P., Rozmus, E. R., Prabhat, A., Procopio, S. B., Zhang, X., Entcheva, E. G., Esser, K. A., & Schroder, E. A. (2025) · Heart Rhythm · doi:10.1016/j.hrthm.2025.10.007 · Cited by 5

Alterations of the skeletal muscle nuclear proteome after acute exercise reveals a post-transcriptional influence.

Martin, R. A., Zhang, X., Viggars, M. R., Sanford, J. A., Taylor, Z. W., Hansen, J., Clair, G., Douglas, C. M., Hesketh, S. J., Adkins, J., et al. (2025) · American Journal of Physiology-Cell Physiology · doi:10.1152/ajpcell.00575.2024 · Cited by 3

Biochemistry That Times the Day

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An Introduction to Circadian Endocrine Physiology: Implications for Exercise and Sports Performance

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Circadian rhythm disruptions associated with opioid use disorder in the synaptic proteomes of the human dorsolateral prefrontal cortex and nucleus accumbensPreprint

Puig, S., Xue, X., Salisbury, R. B., Shelton, M. A., Kim, S.-M., Hildebrand, M. A., Glausier, J. R., Freyberg, Z., Tseng, G. C., Yocum, A. K., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.04.07.536056 · Cited by 3

Circadian Biology in Parasites: Beyond Known Mechanisms

Sadykov, M., & Rijo‐Ferreira, F. (2025) · Annual Review of Microbiology · doi:10.1146/annurev-micro-060424-051248 · Cited by 2

Circadian clock control of ribosome composition promotes rhythmic translation and termination fidelity

Lamb, T. M., Castillo, K., Porter, R., Wu, C., Purvine, S. O., Best, G., Zink, E., Preh, E. O., Shen, L., Sachs, M. S., et al. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116484 · Cited by 2

Feeding-regulated glycogen metabolism drives rhythmic liver protein secretion

Weger, M., Mauvoisin, D., Hoyle, D., Wang, J., Martín, E., Rae, J., Ferguson, C., Klinke, G., Cielesh, M., Macauslane, K. L., et al. (2026) · Nature Metabolism · doi:10.1038/s42255-026-01453-8 · Cited by 3

A Cytological Atlas of the Human Liver Proteome from PROTEOMESKY-LIVERHu 2.0, a Publicly Available Database

Lao, Y., Li, Y., Wang, W., Ren, L., Qian, X., He, F., Chen, X., & Jiang, Y. (2022) · Journal of Proteome Research · doi:10.1021/acs.jproteome.2c00190 · Cited by 2

In silico integrative analysis of multi-omics reveals regulatory layers for diurnal gene expression in mouse liver

Jiang, C., Liu, P., La, C. M., & Guan, D. (2022) · Frontiers in Endocrinology · doi:10.3389/fendo.2022.955070 · Cited by 2

Circadian clock control of tRNA synthetases in Neurospora crassa

Castillo, K., Chapa, E. D., Lamb, T. M., Gangopadhyay, M., & Bell‐Pedersen, D. (2023) · F1000Research · doi:10.12688/f1000research.125351.2 · Cited by 2

Circadian clock control of interactions between eIF2α kinase CPC-3 and GCN1 with ribosomes regulates rhythmic translation initiation

Preh, E. O., Ramirez, M. A., Mohan, S., Guy, C. R., & Bell‐Pedersen, D. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2411916122 · Cited by 2

a1-antitrypsin, a new biomarker of polycystic ovary syndrome by changing its expression and rhythm

Li, N., Shen, B., Cao, W., Chen, R., He, R., Li, Q., Xu, L., & Liu, Y. (2025) · Journal of Ovarian Research · doi:10.1186/s13048-025-01698-z · Cited by 4

Mise en évidence de la physiologie rythmique du foie par protéomique nucléaire

Mauvoisin, D., & Gachon, F. (2017) · médecine/sciences · doi:10.1051/medsci/20173306005 · Cited by 2

Analysis of the circadian rhythm of biological processes in mouse liver and kidney

Podkolodnyy, N. L., Tverdokhleb, N. N., & Podkolodnaya, O. A. (2017) · Vavilov Journal of Genetics and Breeding · doi:10.18699/vj17.311 · Cited by 2

PREMONition: An algorithm for predicting the circadian clock-regulated molecular networkPreprint

Bosman, J., Eelderink-Chen, Z., Laing, E., & Merrow, M. W. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/463190 · Cited by 2

Preservation of ∼12-hour ultradian rhythms of gene expression of mRNA and protein metabolism in the absence of canonical circadian clockPreprint

Zhu, B., & Liu, S. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.01.538977 · Cited by 2

Stress and Circadian Rhythms

Sun, M.-J., Yin, H., Cao, X., Kang, L., Hu, Y., & Tang, Y. C. (2021) · Springer eBooks · doi:10.1007/978-981-16-0522-2_8 · Cited by 2

Searching for Order in Body Clocks: Circadian Rhythms and Redox Balance

del Olmo, M. (2021) · Logos Verlag Berlin eBooks · doi:10.30819/5406 · Cited by 1

Transcriptional Biomarkers in the Diagnosis of Genetic Disorders: Opportunities, Challenges, and Prospects for Application

Нефедова, Л. Н., & Krasnova, T. N. (2025) · Biochemistry (Moscow) · doi:10.1134/s0006297925600383 · Cited by 1

PROTECT: Protein circadian time prediction using unsupervised learning

Ogholbake, A. A., & Cheng, Q. S. (2025) · iScience · doi:10.1016/j.isci.2025.113605 · Cited by 2

Multilayer Timing of Cardiac Circadian Regulation Informs Prevention and Treatment of Cardiovascular Disease

Zhu, L., Qian, B., Zhang, X., & Hu, L. (2026) · Vascular Health and Risk Management · doi:10.2147/vhrm.s578582 · Cited by 1

Circadian Regulation of Glucose Metabolism: Implications for Pathogenesis and Chronotherapy of Type 2 Diabetes

Oraebosi, M. I., Baucom, C., & Cao, R. (2026) · Diabetology · doi:10.3390/diabetology7070122 · Cited by 2

The main sources of molecular organization in the cell. Atlas of self-organized and self-regulated dynamic biostructures

la Fuente, I. M. D., Cortés, J. M., Malaina, I., Pérez‐Yarza, G., Martínez, L., Lopez, J. I., Fedetz, M., & Carrasco-Pujante, J. (2025) · Progress in Biophysics and Molecular Biology · doi:10.1016/j.pbiomolbio.2025.01.003 · Cited by 1

Phosphoproteome and Proteome Sample Preparation from Mouse Tissues for Circadian Analysis

Brüning, F., Humphrey, S. J., & Robles, M. S. (2020) · Methods in molecular biology · doi:10.1007/978-1-0716-0381-9_14 · Cited by 1

Proteomics Approaches to Assess Sleep and Circadian Rhythms

Kliem, F. P., Brüning, F., & Robles, M. S. (2022) · Neuromethods · doi:10.1007/978-1-0716-2577-4_15 · Cited by 1

Circadian Clock, Epigenetic Regulators (Sirtuins), and Metabolism

Meyer‐Ficca, M. L., & Meyer, R. G. (2018) · Elsevier eBooks · doi:10.1016/b978-0-12-801238-3.65831-2 · Cited by 1

Hexosamine biosynthetic pathway integrates circadian and metabolic signals to regulate daily rhythms in protein O-linked N-acetylglucosaminylationPreprint

Liu, X., Blaženović, I., Contreras, A. J., Pham, T. M., Tabuloc, C. A., Li, Y. H., Ji, J., Fiehn, O., & Chiu, J. C. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.18.256636 · Cited by 1

Impact of Bmal1 rescue and time-restricted feeding on liver and muscle proteomes during the active phase in micePreprint

Smith, J. G., Molendijk, J., Blazev, R., Chen, W. H., Zhang, Q., Litwin, C., Greco, C. M., Sassone‐Corsi, P., Muñoz‐Cánoves, P., Parker, B. L., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.06.12.544652 · Cited by 1

Environmental circadian disruption re-programs liver circadian gene expressionPreprint

Duong, H. A., Baba, K., DeBruyne, J. P., Davidson, A. J., Ehlen, C., Powell, M. D., & Tosini, G. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.28.555175 · Cited by 1

Temporal dynamics of RNA metabolic enzyme interactome lay the foundation for riboregulation mediated circadian metabolismPreprint

Jadhav, D. B., & Roy, S. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.07.31.667909 · Cited by 1

The interplay between diet, epigenetics and the circadian clock

DiTacchio, L. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-816843-1.00013-8

Studying the regulation and development of circadian clock by systems biology approaches

Wang, H. (2020) · doi:10.53846/goediss-8221

Circadian clock and liver energy metabolism

Gao, W., Shu, Y.-Y., Ye, J., & Pan, X. (2020) · World Chinese Journal of Digestology · doi:10.11569/wcjd.v28.i20.1025

REVIEWS IN BASIC AND CLINICAL GASTROENTEROLOGY AND HEPATOLOGY

Reinke, H., & Asher, G. (2016)

Differential effects of environmental and endogenous 24h rhythms within a deep-coverage spatiotemporal proteomePreprint

Kay, H., Grünewald, E., Feord, H. K., Gil, S., Peak‐Chew, S., Stangherlin, A., O'Neill, J. S., & Gerben Van Ooijen, A. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.03.30.437663

Discovering circadian clocks in microbes

Bosman, J. (2021) · University of Groningen research database (University of Groningen / Centre for Information Technology) · doi:10.33612/diss.170828314

A Cytological Atlas of Human Liver Proteome from PROTEOME SKY-LIVER Hu 2.0, A Publicly Available DatabasePreprint

Lao, Y., Li, Y., Wang, W., Ren, L., Qian, X., He, F., Chen, X., & Jiang, Y. (2021) · SSRN Electronic Journal · doi:10.2139/ssrn.3905926

Pepe Ribas, fundador de la revista 'Ajoblanco?

Yela, E. (2007) · Cañamo: La revista de la cultura del cannabis

CREBH, a novel liver clock keeper for energy metabolism

Zheng, Z. (2015) · Human Biology

In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism

Robles, M. S., Cox, J., & Mann, M. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004047 · Cited by 383

In-vivo quantitative proteomics reveals a key contribution of post-transcriptional mechanisms to the circadian regulation of liver metabolism. PLoS Genet

Robles, M. S., & Mann, M. (2016)

Circadian orchestration of the hepatic proteome

Reddy, A. B., Karp, N. A., Maywood, E. S., Sage, E. A., Deery, M., O'Neill, J. S., Wong, G. K. Y., Chesham, J., Odell, M., Lilley, K. S., et al. (2006) · Current Biology · doi:10.1016/j.cub.2006.04.026 · Cited by 548

Nuclear Proteomics Uncovers Diurnal Regulatory Landscapes in Mouse Liver

Wang, J., Mauvoisin, D., Martín, E., Atger, F., Galindo, A. N., Dayon, L., Sizzano, F., Palini, A. G., Kussmann, M., Waridel, P., et al. (2016) · Cell Metabolism · doi:10.1016/j.cmet.2016.10.003 · Cited by 190

A proteomics landscape of circadian clock in mouse liver

Wang, Y., Song, L., Liu, M., Ge, R., Zhou, Q., Liu, W., Li, R., Qie, J., Zhen, B., Wang, Y., et al. (2018) · Nature Communications · doi:10.1038/s41467-018-03898-2 · Cited by 147