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Evidence for at least six Hox clusters in the Japanese lamprey ( Lethenteron japonicum )
Open accessAbstract
Significance: Lampreys and hagfishes (cyclostomes) are the only living group of jawless vertebrates and therefore are important for the study of vertebrate evolution. We have characterized Hox clusters in the Japanese lamprey ( Lethenteron japonicum ), and shown that it contains at least six Hox clusters as compared with four Hox clusters in tetrapods. This suggests that the lamprey lineage has undergone an additional round of genome duplication compared with tetrapods. Several conserved noncoding elements (CNEs) were predicted in the Hox clusters of lamprey, elephant shark, and human. Transgenic assay of CNEs demonstrated their potential to function as cis -regulatory elements. Thus, these CNEs may represent part of the core set of cis -regulatory elements that were present in the common ancestor of vertebrates.
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In vivo enhancer analysis of human conserved non-coding sequences
Pennacchio, L. A., Ahituv, N., Moses, A. M., Prabhakar, S., Nobrega, M. A., Shoukry, M., Minovitsky, S., Dubchak, I., Holt, A., Lewis, K. D., et al. (2006) · Nature · doi:10.1038/nature05295 · Cited by 1,165
LAGAN and Multi-LAGAN: Efficient tools for large-scale multiple alignment of genomic DNA
Brudno, M., Do, C. B., Cooper, G. M., Kim, M. F., Davydov, E., Program, N. C. S., Green, E. D., Sidow, A., & Batzoglou, S. (2003) · Genome Research · doi:10.1101/gr.926603 · Cited by 1,115
Highly Conserved Non-Coding Sequences Are Associated with Vertebrate Development
Woolfe, A., Goodson, M., Goode, D. K., Snell, P., McEwen, G. K., Vavouri, T., Smith, S. F., North, P., Callaway, H., Kelly, K., et al. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0030007 · Cited by 970
The rise and fall of Hox gene clusters
Duboule, D. (2007) · Development · doi:10.1242/dev.001065 · Cited by 525
Hox cluster duplications and the opportunity for evolutionary novelties
Wagner, G. P., Amemiya, C., & Ruddle, F. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2536656100 · Cited by 157
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The Genome 10K Project: A Way Forward
Koepfli, K.-P., Paten, B., Scientists, T. G. 1. C. O., & O’Brien, S. J. (2015) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-090414-014900 · Cited by 311
Smith, J. J., Timoshevskaya, N., Ye, C., Holt, C., Keinath, M. C., Parker, H. J., Cook, M. E., Hess, J. E., Narum, S. R., Lamanna, F., et al. (2018) · Nature Genetics · doi:10.1038/s41588-017-0036-1 · Cited by 305
Robertson, F. M., Gundappa, M. K., Grammes, F., Hvidsten, T. R., Redmond, A. K., Lien, S., Martin, S. A. M., Holland, P. W. H., Sandve, S. R., & Macqueen, D. J. (2017) · Genome Biology · doi:10.1186/s13059-017-1241-z · Cited by 212
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Metadata
- Authors
- Mehta, T. K., Ravi, V., Yamasaki, S., Lee, A. P., Lian, M. M., Tay, B.-H., Tohari, S., Yanai, S., Tay, A., Brenner, S., & Venkatesh, B.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2013-09-16
- Volume
- 110
- Issue
- 40
- Pages
- 16044-16049
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2063807032
- Cited by
- 192
- References
- 5
- FWCI
- 11.03
- Type
- journal article
- Language
- en
- Open access
- green
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- Mehta, T. K., Ravi, V., Yamasaki, S., Lee, A. P., Lian, M. M., Tay, B.-H., Tohari, S., Yanai, S., Tay, A., Brenner, S., & Venkatesh, B. (2013). Evidence for at least six Hox clusters in the Japanese lamprey ( Lethenteron japonicum ). Proceedings of the National Academy of Sciences. https://doi.org/10.1073/pnas.1315760110
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