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Lineage-specific rediploidization is a mechanism to explain time-lags between genome duplication and evolutionary diversification

Robertson, Fiona M., Gundappa, Manu Kumar, Grammes, Fabian, Hvidsten, Torgeir R., Redmond, Anthony K., Lien, Sigbjørn, Martin, Samuel A. M., Holland, Peter W. H., Sandve, Simen R., Macqueen, Daniel J.·2017·Genome Biology
DOI 10.1186/s13059-017-1241-zPMC PMC5470254

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  • Maintenance of tetraploidy for millions of years over entire homeologs has been previously shown following autotetraploidization events in salmonids and Acipenseriformes.

    “Maintenance of tetraploidy for millions of years over entire homeologs has been previously shown following autotetraploidization events in salmonids and Acipenseriformes (Robertson et al. 2017; Gundappa et al. 2022; Redmond et al. 2022).”

    From An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication (2022) · cites this paper as Robertson et al. 2017

  • Rediploidization was not uniform across the ancestral teleost genome.

    “This snapshot of the rediploidization status at the time of the Osteoglossiformes/Clupeocephala lineage split shows that rediploidization was not uniform across the ancestral teleost genome, consistent with results in salmonids (Robertson et al. 2017; Gundappa et al. 2022).”

    From An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication (2022) · cites this paper as Robertson et al. 2017

  • "a" and "b" gene assignments are not informative of the underlying sequence information contained in genomic regions that showed delayed rediploidization.

    “As such, “a” and “b” gene assignments are not informative of the underlying sequence information contained in genomic regions that showed delayed rediploidization, and these genes should be considered as tetralogs rather than paralogs and orthologs (Martin and Holland 2014; Robertson et al. 2017).”

    From An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication (2022) · cites this paper as Robertson et al. 2017

  • Genes in genomic regions that showed delayed rediploidization should be considered as tetralogs rather than paralogs and orthologs.

    “As such, “a” and “b” gene assignments are not informative of the underlying sequence information contained in genomic regions that showed delayed rediploidization, and these genes should be considered as tetralogs rather than paralogs and orthologs (Martin and Holland 2014; Robertson et al. 2017).”

    From An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication (2022) · cites this paper as Robertson et al. 2017

  • The genetic and functional divergence of these genes has occurred independently in each subsequent lineage.

    “The genetic and functional divergence of these genes has occurred independently in each subsequent lineage, and further inquiry will reveal whether these specific evolutionary dynamics have contributed to lineage-specific evolution in the major teleost clades, as described in salmonids (Robertson et al. 2017; Gundappa et al. 2022).”

    From An atlas of fish genome evolution reveals delayed rediploidization following the teleost whole-genome duplication (2022) · cites this paper as Robertson et al. 2017

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Cited by

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Metadata

Authors
Robertson, F. M., Gundappa, M. K., Grammes, F., Hvidsten, T. R., Redmond, A. K., Lien, S., Martin, S. A. M., Holland, P. W. H., Sandve, S. R., & Macqueen, D. J.
Venue
Genome Biology
Publisher
Springer Science and Business Media LLC
Published
2017-06-14
Volume
18
Issue
1
ISSN
1474-760X
DOI
10.1186/s13059-017-1241-z
PMC
PMC5470254
Cited by
212
References
10
Language
en
Funders
  • Natural Environment Research Council (NBAF704)
  • Natural Environment Research Council (GB) (NE/L50175X/1)

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