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Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota

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Ambient nitrate switches the ammonium consumption pathway in the euphotic ocean

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Ammonia‐oxidizing archaea release a suite of organic compounds potentially fueling prokaryotic heterotrophy in the ocean

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Alternative strategies of nutrient acquisition and energy conservation map to the biogeography of marine ammonia-oxidizing archaea

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Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations

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Evolution in action: habitat transition from sediment to the pelagial leads to genome streamlining in Methylophilaceae

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Patterns of thaumarchaeal gene expression in culture and diverse marine environments

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Archaeal nitrification is constrained by copper complexation with organic matter in municipal wastewater treatment plants

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Novel insights into the Thaumarchaeota in the deepest oceans: their metabolism and potential adaptation mechanisms

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Phylogenomic analysis of lipid biosynthetic genes of Archaea shed light on the ‘lipid divide’

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Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment

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Regulation of nitrous oxide production in low-oxygen waters off the coast of Peru

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Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation

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Metagenomic analysis of nitrogen and methane cycling in the Arabian Sea oxygen minimum zone

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Progress and Challenges in Ocean Metaproteomics and Proposed Best Practices for Data Sharing

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Cultivation and Genomic Analysis of “Candidatus Nitrosocaldus islandicus,” an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland

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Salt tolerance-based niche differentiation of soil ammonia oxidizers

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Membrane Lipid Composition of the Moderately Thermophilic Ammonia-Oxidizing Archaeon “ Candidatus Nitrosotenuis uzonensis” at Different Growth Temperatures

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A combined lipidomic and 16S rRNA gene amplicon sequencing approach reveals archaeal sources of intact polar lipids in the stratified Black Sea water column

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Expansion of Thaumarchaeota habitat range is correlated with horizontal transfer of ATPase operons

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Nitrosopumilus adriaticus sp. nov. and Nitrosopumilus piranensis sp. nov., two ammonia-oxidizing archaea from the Adriatic Sea and members of the class Nitrososphaeria

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Nitrification and Nitrous Oxide Production in the Offshore Waters of the Eastern Tropical South Pacific

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Adaptive genetic traits in pelagic freshwater microbes

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Gene duplication drives genome expansion in a major lineage of Thaumarchaeota

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Factors influencing nitrification rates and the abundance and transcriptional activity of ammonia‐oxidizing microorganisms in the dark northeast P acific O cean

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Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean

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Phosphonate production by marine microbes: exploring new sources and potential function

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Geographic Distribution of Archaeal Ammonia Oxidizing Ecotypes in the Atlantic Ocean

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Stable carbon isotope ratios of intact GDGTs indicate heterogeneous sources to marine sediments

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Life's utilization of B vitamins on early Earth

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Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor

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Localized high abundance of Marine Group II archaea in the subtropical Pearl River Estuary: implications for their niche adaptation

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Carbon content, carbon fixation yield and dissolved organic carbon release from diverse marine nitrifiers

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Iron requirements and uptake strategies of the globally abundant marine ammonia-oxidising archaeon, Nitrosopumilus maritimus SCM1

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Prokaryotic diversity in marine and freshwater recirculating aquaculture systems

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Archaeal lipids trace ecology and evolution of marine ammonia-oxidizing archaea

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Acidification Enhances Hybrid N2O Production Associated with Aquatic Ammonia-Oxidizing Microorganisms

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Proteomic Response of Three Marine Ammonia-Oxidizing Archaea to Hydrogen Peroxide and Their Metabolic Interactions with a Heterotrophic Alphaproteobacterium

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Genomes of the “ Candidatus Actinomarinales” Order: Highly Streamlined Marine Epipelagic Actinobacteria

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Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems

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Heterotrophic Thaumarchaea with Small Genomes Are Widespread in the Dark Ocean

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Needles in the blue sea: Sub‐species specificity in targeted protein biomarker analyses within the vast oceanic microbial metaproteome

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A catalogue of 136 microbial draft genomes from Red Sea metagenomes

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Genomes of Thaumarchaeota from deep sea sediments reveal specific adaptations of three independently evolved lineages

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Meta-omic signatures of microbial metal and nitrogen cycling in marine oxygen minimum zones

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Phylogenetic divergence and adaptation of Nitrososphaeria across lake depths and freshwater ecosystems

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Nitrogen uptake and nitrification in the subarctic North Atlantic Ocean

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Survival strategies of ammonia-oxidizing archaea (AOA) in a full-scale WWTP treating mixed landfill leachate containing copper ions and operating at low-intensity of aeration

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The acceleration of dissolved cobalt's ecological stoichiometry due to biological uptake, remineralization, and scavenging in the Atlantic Ocean

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Ecological Energetic Perspectives on Responses of Nitrogen-Transforming Chemolithoautotrophic Microbiota to Changes in the Marine Environment

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The do-it-all nitrifier

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Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria

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Niche Differentiation of Aerobic and Anaerobic Ammonia Oxidizers in a High Latitude Deep Oxygen Minimum Zone

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Characteristics of Ammonia Removal and Nitrifying Microbial Communities in a Hybrid Biofloc-RAS for Intensive Litopenaeus vannamei Culture: A Pilot-Scale Study

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Unexpected complexity of the ammonia monooxygenase in archaea

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Marine ammonia-oxidising archaea and bacteria occupy distinct iron and copper niches

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Genome Reconstruction from Metagenomic Data Sets Reveals Novel Microbes in the Brackish Waters of the Caspian Sea

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Nitrosarchaeum koreense gen. nov., sp. nov., an aerobic and mesophilic, ammonia-oxidizing archaeon member of the phylum Thaumarchaeota isolated from agricultural soil

Jung, M., Islam, M. A., Gwak, J.-H., Kim, J., & Rhee, S. (2018) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijsem.0.002926 · Cited by 56 · see citing works

Influence of Substrate Concentration on the Culturability of Heterotrophic Soil Microbes Isolated by High-Throughput Dilution-to-Extinction Cultivation

Bartelme, R. P., Custer, J. M., Dupont, C. L., Espinoza, J. L., Torralba, M., Khalili, B., & Carini, P. (2020) · mSphere · doi:10.1128/msphere.00024-20 · Cited by 56 · see citing works

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta

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“Candidatus Nitrosotenuis aquarius,” an Ammonia-Oxidizing Archaeon from a Freshwater Aquarium Biofilter

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Genomics insights into ecotype formation of ammonia‐oxidizing archaea in the deep ocean

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Water column biogeochemistry of oxygen minimum zones in the eastern tropical North Atlantic and eastern tropical South Pacific oceans

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Integrated mobile genetic elements in Thaumarchaeota

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Light and temperature control the seasonal distribution of thaumarchaeota in the South Atlantic bight

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Novel order-level lineage of ammonia-oxidizing archaea widespread in marine and terrestrial environments

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Metaproteomics of aquatic microbial communities in a deep and stratified estuary

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A Reduction of Transcriptional Regulation in Aquatic Oligotrophic Microorganisms Enhances Fitness in Nutrient-Poor Environments

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A single Thaumarchaeon drives nitrification in deep oligotrophic Lake Constance

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Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent

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Diverse ecophysiological adaptations of subsurface Thaumarchaeota in floodplain sediments revealed through genome-resolved metagenomics

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Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota

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A marine heatwave drives significant shifts in pelagic microbiology

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Organic biogeochemistry in the oxygen-deficient ocean: A review

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Microbial functional diversity across biogeochemical provinces in the central Pacific Ocean

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