The DOI matches its Crossref record; 37 of the 37 references it cites were found in a registry or an index.
Multiple transcription-factor genes are early targets of phytochrome A signaling
Open accessAbstract
The phytochrome family of sensory photoreceptors directs adaptational changes in gene expression in response to environmental light signals. Using oligonucleotide microarrays to measure expression profiles in wild-type and phytochrome A (phyA) null-mutant Arabidopsis seedlings, we have shown that 10% of the genes represented on the array are regulated by phyA in response to a continuous far-red light signal. Strikingly, 44% of the genes responding to the signal within 1 h are predicted to encode multiple classes of transcriptional regulators. Together with previous data, this observation suggests that phyA may regulate seedling photomorphogenesis by direct targeting of light signals to the promoters of genes encoding a master set of diverse transcriptional regulators, responsible in turn for orchestrating the expression of multiple downstream target genes in various branches of a phyA-regulated transcriptional network.
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Cites
Cluster analysis and display of genome-wide expression patterns
Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14863 · Cited by 16,184
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
Alon, U., Barkai, N., Notterman, D. A., Gish, K., Ybarra, S., Mack, D., & Levine, A. J. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.12.6745 · Cited by 4,167
From molecular to modular cell biology.
Hartwell, L. H., Hopfield, J. J., Leibler, S., & Murray, A. W. (1999) · Nature · doi:10.1038/35011540 · Cited by 3,632
Arabidopsis Transcription Factors: Genome-Wide Comparative Analysis Among Eukaryotes
Riechmann, J. L., Heard, J., Martin, G., Reuber, L., Jiang, C.-Z., Keddie, J., Adam, L., Pineda, O., Ratcliffe, O. J., Samaha, R. R., et al. (2000) · Science · doi:10.1126/science.290.5499.2105 · Cited by 2,807
High density synthetic oligonucleotide arrays
Lipshutz, R. J., Fodor, S. P. A., Gingeras, T. R., & Lockhart, D. J. (1999) · Nature Genetics · doi:10.1038/4447 · Cited by 2,205
Orchestrated Transcription of Key Pathways in Arabidopsis by the Circadian Clock
Harmer, S. L., Hogenesch, J. B., Straume, M., Chang, H.-S., Han, B., Zhu, T., Wang, X., Kreps, J. A., & Kay, S. A. (2000) · Science · doi:10.1126/science.290.5499.2110 · Cited by 1,640
Self-citationDistinct Roles of CONSTANS Target Genes in Reproductive Development of Arabidopsis
Samach, A., Onouchi, H., Gold, S. E., Ditta, G. S., Schwarz-Sommer, Z., Yanofsky, M. F., & Coupland, G. (2000) · Science · doi:10.1126/science.288.5471.1613 · Cited by 1,439
Phytochromes and light signal perception by plants—an emerging synthesis
Smith, H. (2000) · Nature · doi:10.1038/35036500 · Cited by 1,380
Valvekens, D., Montagu, M. V., & Lijsebettens, M. V. (1988) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.85.15.5536 · Cited by 1,277
Cited by
Photoreceptor Regulation of CONSTANS Protein in Photoperiodic Flowering
Valverde, F., Mouradov, A., Soppe, W., Ravenscroft, D., Samach, A., & Coupland, G. (2004) · Science · doi:10.1126/science.1091761 · Cited by 1,309
DNA transposons and the evolution of eukaryotic genomes.
Feschotte, C., & Pritham, E. J. (2007) · Annual Review of Genetics · doi:10.1146/annurev.genet.40.110405.090448 · Cited by 1,218
Li, J., Brader, G., & Palva, E. T. (2004) · The Plant Cell · doi:10.1105/tpc.016980 · Cited by 1,207
Phototropin Blue-Light Receptors
Christie, J. M. (2007) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.58.032806.103951 · Cited by 937
Phytochrome photosensory signalling networks
Quail, P. H. (2002) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm728 · Cited by 769
Self-citation
Metadata
- Authors
- Tepperman, J. M., Zhu, T., Chang, H.-S., Wang, X., & Quail, P. H.
- Venue
- Proceedings of the National Academy of Sciences
- Published
- 2001-07-31
- Volume
- 98
- Issue
- 16
- Pages
- 9437-9442
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- OpenAlex
- W2036656803
- Cited by
- 481
- References
- 37
- FWCI
- 51.21
- Type
- journal article
- Language
- en
- Open access
- green
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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