Cited by 211Epigenetics and DNA MethylationGenetics, Aging, and Longevity in Model OrganismsTelomeres, Telomerase, and Senescence

Epigenetic-based age acceleration in a representative sample of older Americans: Associations with aging-related morbidity and mortality

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Faul, Jessica D., Kim, Jung Ki, Levine, Morgan E., Thyagarajan, Bharat, Weir, David R., Crimmins, Eileen M.·2023·Proceedings of the National Academy of Sciences

Abstract

Biomarkers developed from DNA methylation (DNAm) data are of growing interest as predictors of health outcomes and mortality in older populations. However, it is unknown how epigenetic aging fits within the context of known socioeconomic and behavioral associations with aging-related health outcomes in a large, population-based, and diverse sample. This study uses data from a representative, panel study of US older adults to examine the relationship between DNAm-based age acceleration measures in the prediction of cross-sectional and longitudinal health outcomes and mortality. We examine whether recent improvements to these scores, using principal component (PC)-based measures designed to remove some of the technical noise and unreliability in measurement, improve the predictive capability of these measures. We also examine how well DNAm-based measures perform against well-known predictors of health outcomes such as demographics, SES, and health behaviors. In our sample, age acceleration calculated using “second and third generation clocks,” PhenoAge, GrimAge, and DunedinPACE, is consistently a significant predictor of health outcomes including cross-sectional cognitive dysfunction, functional limitations and chronic conditions assessed 2 y after DNAm measurement, and 4-y mortality. PC-based epigenetic age acceleration measures do not significantly change the relationship of DNAm-based age acceleration measures to health outcomes or mortality compared to earlier versions of these measures. While the usefulness of DNAm-based age acceleration as a predictor of later life health outcomes is quite clear, other factors such as demographics, SES, mental health, and health behaviors remain equally, if not more robust, predictors of later life outcomes.

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Crossref · 10.1073/pnas.2215840120

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  • Compared to chronological age, epigenetic clocks provide more sensitive measures of how stressors influence biological aging and health.

    “Compared to chronological age, epigenetic clocks provide more sensitive measures of how stressors influence biological aging and health (Faul et al., 2023).”

    From Grandparent Caregiving and Epigenetic Aging among Midlife and Older Adults in the United States (2026) · cites this paper as Faul et al., 2023

    The Abstract says DNA-methylation biomarkers are thought to be influenced by external exposures and reports associations between epigenetic age acceleration and health outcomes in older US adults. The Methods describe age acceleration as a measure with the effect of chronological age removed. Neither section establishes that epigenetic clocks are more sensitive than chronological age to the effects of stressors. (LLM, conf=0.82)

    Experimental — accuracy not yet measured
  • Epigenetic age deceleration and a lower pace of aging are associated with better health and a lower risk of chronic conditions, infection, cognitive decline, and all-cause mortality.

    “Conversely, epigenetic age deceleration and a lower pace of aging are associated with better health and a lower risk of the aforementioned conditions (Faul et al., 2023).”

    From Grandparent Caregiving and Epigenetic Aging among Midlife and Older Adults in the United States (2026) · cites this paper as Faul et al., 2023

    The Results and Discussion (page numbers unavailable) associate faster epigenetic aging, including a faster DunedinPACE measure, with multimorbidity and mortality; this supports the converse association for slower aging. The paper reports cognitive dysfunction measured at the same time as DNA methylation, not subsequent cognitive decline, and the passages do not establish an association with infection risk. (LLM, conf=0.88)

    Experimental — accuracy not yet measured
  • Higher epigenetic age acceleration and pace of aging are associated with chronic conditions, increased infection risk, cognitive decline, and general all-cause mortality.

    “Higher EAA and pace of aging are associated with chronic conditions, increased infection risk, cognitive decline, and general all-cause mortality.”

    From Grandparent Caregiving and Epigenetic Aging among Midlife and Older Adults in the United States (2026) · cites this paper as Faul et al., 2023

    The Results (page not provided) associate epigenetic age acceleration and DunedinPACE with multimorbidity, concurrent cognitive dysfunction, and four-year mortality. They do not establish cognitive decline over time: the paper says cognition could only be analyzed cross-sectionally. Our copy also does not report an association with infection risk (searched: infection, infection risk). (LLM, conf=0.90)

    Experimental — accuracy not yet measured
  • Stress can alter the epigenomic landscape of cells, a dynamic map of gene expression in response to external factors.

    “Stress can alter the epigenomic landscape of cells—a dynamic map of how genes are expressed (activated or suppressed) in response to external factors (Faul et al., 2023).”

    From Grandparent Caregiving and Epigenetic Aging among Midlife and Older Adults in the United States (2026) · cites this paper as Faul et al., 2023

    The opening text following the Abstract says DNA methylation is thought to be influenced by external exposures and to modify gene expression. It does not specifically identify stress as an exposure or define the epigenomic landscape as a dynamic map of gene expression; the Discussion also notes that DNA methylation is only one measure of epigenetic modification. No page number is available in our copy. (LLM, conf=0.82)

    Experimental — accuracy not yet measured
  • Chronic conditions were excluded from primary models because they are often endogenous with epigenetic aging, but included in sensitivity analyses.

    “Because chronic conditions are often endogenous with epigenetic aging, they were excluded from primary models, but included in sensitivity analyses (Faul et al., 2023).”

    From Grandparent Caregiving and Epigenetic Aging among Midlife and Older Adults in the United States (2026) · cites this paper as Faul et al., 2023

    The Analytic Approach lists the primary model adjustments without chronic conditions, which supports their exclusion as covariates. It does not say they were excluded because of endogeneity or included in sensitivity analyses; the additional models instead adjust for blood-based biomarkers. The Chronic disease assessment section treats chronic conditions as components of the multimorbidity outcome. (LLM, conf=0.76)

    Experimental — accuracy not yet measured

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Research works printed but not linked: 32

  1. [2]D. McHugh, J. Gil, Senescence and aging: Causes, consequences, and therapeutic avenues. J. Cell Biol. 217, 65– 77 (2018). 29114066 PMC5748990
  2. [3]M. J. Jones, S. J. Goodman, M. S. Kobor, DNA methylation and healthy human aging. Aging Cell 14, 924– 932 (2015). 25913071 PMC4693469
  3. [4]S. Horvath, K. Raj, DNA methylation-based biomarkers and the epigenetic clock theory of ageing. Nat. Rev. Genet. 19, 371– 384 (2018). 29643443
  4. [5]M. J. Aristizabal, Biological embedding of experience: A primer on epigenetics. Proc. Natl. Acad. Sci. U.S.A. 117, 23261– 23269 (2020). 31624126 PMC7519272
  5. [7]G. Hannum, Genome-wide methylation profiles reveal quantitative views of human aging rates. Mol. Cell 49, 359– 367 (2013). 23177740 PMC3780611
  6. [8]D. W. Belsky, DunedinPACE, a DNA methylation biomarker of the pace of aging. Elife 11, e73420 (2022). 35029144 PMC8853656
  7. [9]A. T. Lu, DNA methylation GrimAge strongly predicts lifespan and healthspan. Aging 11, 303– 327 (2019). 30669119 PMC6366976
  8. [10]M. E. Levine, An epigenetic biomarker of aging for lifespan and healthspan. Aging 10, 573– 591 (2018). 29676998 PMC5940111
  9. [11]L. Raffington, D. W. Belsky, Integrating DNA methylation measures of biological aging into social determinants of health research. Curr. Environ. Health Rep. 9, 196– 210 (2022). 35181865
  10. [12]G. H. Graf, Social mobility and biological aging among older adults in the United States. PNAS Nexus 1, pgac029 (2022). 35615471 PMC9123172
  11. [13]E. M. Crimmins, B. Thyagarajan, M. E. Levine, D. R. Weir, J. Faul, Associations of age, sex, race/ethnicity and education with 13 epigenetic clocks in a nationally representative US sample: The health and retirement study. J. Gerontol. A Biol. Sci. Med. Sci. 76, 1117– 1123 (2021). 33453106 PMC8140049
  12. [14]F. Grodstein, Characteristics of epigenetic clocks across blood and brain tissue in older women and men. Front. Neurosci. 14, 555307 (2020). 33488342 PMC7817909
  13. [15]C. McCrory, How does socio-economic position (SEP) get biologically embedded? A comparison of allostatic load and the epigenetic clock(s). Psychoneuroendocrinology 104, 64– 73 (2019). 30818253
  14. [16]C. McCrory, Epigenetic clocks and allostatic load reveal potential sex-specific drivers of biological aging. J. Gerontol. A Biol. Sci. Med. Sci. 75, 495– 503 (2020). 31603985
  15. [18]M. W. Logue, The correlation of methylation levels measured using Illumina 450K and EPIC BeadChips in blood samples. Epigenomics 9, 1363– 1371 (2017). 28809127 PMC5967357
  16. [19]K. Sugden, Patterns of reliability: Assessing the reproducibility and integrity of DNA methylation measurement. Patterns 1, 100014 (2020). 32885222 PMC7467214
  17. [20]Z. Xu, J. A. Taylor, Reliability of DNA methylation measures using Illumina methylation BeadChip. Epigenetics 16, 495– 502 (2021). 32749174 PMC8078668
  18. [22]R. Pidsley, Critical evaluation of the Illumina MethylationEPIC BeadChip microarray for whole-genome DNA methylation profiling. Genome Biol. 17, 208 (2016). 27717381 PMC5055731
  19. [23]L. A. Vanderlinden, An effective processing pipeline for harmonizing DNA methylation data from Illumina’s 450K and EPIC platforms for epidemiological studies. BMC Res. Notes 14, 352 (2021). 34496950 PMC8424820
  20. [24]A. T. Higgins-Chen, A computational solution for bolstering reliability of epigenetic clocks: Implications for clinical trials and longitudinal tracking. Nat. Aging. 2, 644– 661 (2022). 36277076 PMC9586209
  21. [25]A. Steptoe, P. Zaninotto, Lower socioeconomic status and the acceleration of aging: An outcome-wide analysis. Proc. Natl. Acad. Sci. U.S.A. 117, 14911– 14917 (2020). 32541023 PMC7334539
  22. [26]E. M. Crimmins, J. K. Kim, T. E. Seeman, Poverty and biological risk: The earlier "aging" of the poor. J. Gerontol. A Biol. Sci. Med. Sci. 64, 286– 292 (2009). 19196637 PMC2655037
  23. [27]D. W. Belsky, Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm. Elife 9, e54870 (2020). 32367804 PMC7282814
  24. [28]E. M. Crimmins, B. Thyagarajan, J. K. Kim, D. Weir, J. Faul, Quest for a summary measure of biological age: The health and retirement study. Geroscience 43, 395– 408 (2021). 33544281 PMC8050146
  25. [30]R. E. Marioni, The epigenetic clock is correlated with physical and cognitive fitness in the Lothian Birth Cohort 1936. Int. J. Epidemiol. 44, 1388– 1396 (2015). 25617346 PMC4588858
  26. [31]R. E. Marioni, DNA methylation age of blood predicts all-cause mortality in later life. Genome Biol. 16, 25 (2015). 25633388 PMC4350614
  27. [32]P. D. Fransquet, J. Wrigglesworth, R. L. Woods, M. E. Ernst, J. Ryan, The epigenetic clock as a predictor of disease and mortality risk: A systematic review and meta-analysis. Clin. Epigenet. 11, 62 (2019). PMC6458841 30975202
  28. [33]C. McCrory, GrimAge outperforms other epigenetic clocks in the prediction of age-related clinical phenotypes and all-cause mortality. J. Gerontol. A Biol. Sci. Med. Sci. 76, 741– 749 (2021). 33211845 PMC8087266
  29. [36]S. E. Cook, M. Marsiske, K. J. McCoy, The use of the modified telephone interview for cognitive status (TICS-M) in the detection of amnestic mild cognitive impairment. J. Geriatr. Psychiat. Neurol. 22, 103– 109 (2009). PMC2913129 19417219
  30. [39]H. Barcelo, J. Faul, E. Crimmins, B. Thyagarajan, A practical cryopreservation and staining protocol for immunophenotyping in population studies. Curr. Protoc. Cytom. 84, e35 (2018). 30040214 PMC6060642
  31. [40]D. Hunter-Schlichting, Validation of a hybrid approach to standardize immunophenotyping analysis in large population studies: The health and retirement study. Sci. Rep. 10, 8759 (2020). 32472068 PMC7260195
  32. [41]B. Thyagarajan, Age-related differences in T cell subsets in a nationally representative sample of people over age 55: Findings from the health and retirement study. J. Gerontol. A Biol. Sci. Med, Sci. 5, 927– 933 (2021). PMC9071411 34633448

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Authors
Faul, J. D., Kim, J. K., Levine, M. E., Thyagarajan, B., Weir, D. R., & Crimmins, E. M.
Affiliations
  • University of Michigan (US)
  • University of Southern California (US)
  • Yale University (US)
  • University of Minnesota (US)
Corresponding author
Crimmins, Eileen M.
Venue
Proceedings of the National Academy of Sciences
Published
2023-02-21
Volume
120
Issue
9
Pages
e2215840120-e2215840120
ISSN
  • 0027-8424 (ISSN-L)
  • 1091-6490
OpenAlex
W4321440558
Cited by
211
References
5
Citations by year
2026: 53 · 2025: 78 · 2024: 58 · 2023: 22
FWCI
18.89
Type
journal article
Language
en
Open access
Locations
  • Proceedings of the National Academy of Sciences (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
Funders
HHS | NIH | National Institute on Aging (R01 AG AG060110, U01 AG009740)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Epigenetics and DNA Methylation
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Aging › Genetics, Aging, and Longevity in Model Organisms
  • Health Sciences › Medicine › Physiology › Telomeres, Telomerase, and Senescence
Keywords
epigenetic aging, DNA methylation, accelerated aging, biological age, mortality prediction, cognitive impairment, functional limitations, chronic disease, socioeconomic status, health behavior, PhenoAge, GrimAge, DunedinPACE, older adults, health outcome prediction
MeSH terms
Acceleration, Aged, Aging, Cross-Sectional Studies, Humans, Biomarkers, DNA Methylation, Epigenesis, Genetic

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