Cited by 88Methane Hydrates and Related PhenomenaMicrobial Community Ecology and PhysiologyMicrobial Fuel Cells and Bioremediation

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Acetogenesis in Deep Subseafloor Sediments of The Juan de Fuca Ridge Flank: A Synthesis of Geochemical, Thermodynamic, and Gene-based Evidence

Lever, Mark A., Heuer, Verena B., Morono, Yuki, Masui, Noriaki, Schmidt, Frauke, Alperin, Marc J., Inagaki, Fumio, Hinrichs, Kai-Uwe, Teske, Andreas·2010·Geomicrobiology Journal

DOI 10.1080/01490450903456681

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Abstract

In deep subsurface sediments of the Juan de Fuca Ridge Flank, porewater acetate that is depleted in 13 C relative to sedimentary organic matter indicates an acetogenic component to total acetate production. Thermodynamic calculations indicate common fermentation products or lignin monomers as potential substrates for acetogenesis. The classic autotrophic reaction may contribute as well, provided that dihydrogen (H 2 ) concentrations are not drawn down to the thermodynamic thresholds of the energetically more favorable processes of sulfate reduction and methanogenesis. A high diversity of novel formyl tetrahydrofolate synthetase (fhs) genes throughout the upper half of the sediment column indicates the genetic potential for acetogenesis. Our results suggest that a substantial fraction of the acetate produced in marine sediment porewaters may derive from acetogenesis, in addition to the conventionally invoked sources fermentation and sulfate reduction.

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Whole-Genome Analysis of the Methyl tert -Butyl Ether-Degrading Beta-Proteobacterium Methylibium petroleiphilum PM1
Kane, S. R., Chakicherla, A. Y., Chain, P., Schmidt, R., Shin, M. W., Legler, T. C., Scow, K. M., Larimer, F. W., Lucas, S. M., Richardson, P. M., et al. (2006) · Journal of Bacteriology · doi:10.1128/jb.01259-06 · Cited by 167
Description of Treponema azotonutricium sp. nov. and Treponema primitia sp. nov., the First Spirochetes Isolated from Termite Guts
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Volatile fatty acid cycling in organic-rich marine sediments
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Oxidation of primary aliphatic alcohols by Acetobacterium carbinolicum sp. nov., a homoacetogenic anaerobe
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Enrichment and isolation of Acetitomaculum ruminis, gen. nov., sp. nov.: acetogenic bacteria from the bovine rumen
Greening, R. C., & Leedle, J. A. Z. (1989) · Archives of Microbiology · doi:10.1007/bf00416597 · Cited by 151
Kinetics of the simultaneous utilization of sugar mixtures by Escherichia coli in continuous culture
Lendenmann, U., Snozzi, M., & Egli, T. W. (1996) · Applied and Environmental Microbiology · doi:10.1128/aem.62.5.1493-1499.1996 · Cited by 151
The formation of acetic acid from carbon dioxide and hydrogen by anaerobic spore-forming bacteria
Wieringa, K. T. (1939) · Antonie van Leeuwenhoek · doi:10.1007/bf02146190 · Cited by 150
Clostridium formicoaceticum nov. spec. Isolation, description and distinction from C. aceticum and C. thermoaceticum
Andreesen, J. R., Gottschalk, G., & Schlegel, H. G. (1970) · Archives of Microbiology · doi:10.1007/bf00409521 · Cited by 150
The carbon isotope biogeochemistry of acetate from a methanogenic marine sediment
Blair, N. E., & Carter, W. D. (1992) · Geochimica et Cosmochimica Acta · doi:10.1016/0016-7037(92)90060-v · Cited by 144
Growth ofClostridium thermoaceticum on H2/CO2 or CO as energy source
Kerby, R. L., & Zeikus, J. G. (1983) · Current Microbiology · doi:10.1007/bf01567310 · Cited by 142
Trends in Basalt and Sediment Core Contamination During IODP Expedition 301
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Acetonema longum gen.nov.sp.nov., an H2/CO2 acetogenic bacterium from the termite, Pterotermes occidentis
Kane, M. D., & Breznak, J. A. (1991) · Archives of Microbiology · doi:10.1007/bf00290979 · Cited by 141
Peptostreptococcus productus strain that grows rapidly with CO as the energy source
Lorowitz, W. H., & Bryant, M. P. (1984) · Applied and Environmental Microbiology · doi:10.1128/aem.47.5.961-964.1984 · Cited by 140
Sulfitobacter mediterraneus sp. nov., a new sulfite-oxidizing member of the α-Proteobacteria
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Potential applications of cutin-derived CuO reaction products for discriminating vascular plant sources in natural environments
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Energetics of Syntrophic Propionate Oxidation in Defined Batch and Chemostat Cocultures
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Oxidative and reductive acetyl CoA/carbon monoxide dehydrogenase pathway in Desulfobacterium autotrophicum
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Haloarcula marismortui (Volcani) sp. nov., nom. rev., an Extremely Halophilic Bacterium from the Dead Sea
Oren, A., Ginzburg, M., Ginzburg, B. Z., Hochstein, L. I., & Volcani, B. E. (1990) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-40-2-209 · Cited by 135
Ecological consequences of the phylogenetic and physiological diversities of acetogens
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Staleya guttiformis gen. nov., sp. nov. and Sulfitobacter brevis sp. nov., alpha-3-Proteobacteria from hypersaline, heliothermal and meromictic antarctic Ekho Lake.
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Ruminococcus hydrogenotrophicus sp. nov., a new H 2 /CO 2 -utilizing acetogenic bacterium isolated from human feces
Bernalier, A., Willems, A. L., Leclerc, M., Rochet, V., & Collins, M. D. (1996) · Archives of Microbiology · doi:10.1007/s002030050373 · Cited by 133
Carbon Isotope Fractionation by Autotrophic Bacteria with Three Different C0 2 Fixation Pathways
Preuß, A., Schauder, R., Fuchs, G., & Stichler, W. (1989) · Zeitschrift für Naturforschung C · doi:10.1515/znc-1989-5-610 · Cited by 130
In vitro H2 utilization by a ruminal acetogenic bacterium cultivated alone or in association with an archaea methanogen is stimulated by a probiotic strain of Saccharomyces cerevisiae
Chaucheyras, F., Fonty, G., Bertin, G., & Gouet, P. (1995) · Applied and Environmental Microbiology · doi:10.1128/aem.61.9.3466-3467.1995 · Cited by 127
Isolation and characterization of a methyl chloride utilizing, strictly anaerobic bacterium
Traunecker, J., Preu�, A., & Diekert, G. B. (1991) · Archives of Microbiology · doi:10.1007/bf00248720 · Cited by 126
Characterization of microbial processes in deep aquifers of the Fennoscandian Shield
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Acetogenic and Sulfate-Reducing Bacteria Inhabiting the Rhizoplane and Deep Cortex Cells of the Sea Grass Halodule wrightii
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Clostridium pfennigii sp. nov. Uses Methoxyl Groups of Monobenzenoids and Produces Butyrate
Krumholz, L. R., & Bryant, M. P. (1985) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-35-4-454 · Cited by 123
Isolation and characterization of a new, methylotrophic, acidogenic anaerobe, the marburg strain
Zeikus, J. G., Lynd, L. H., Thompson, T. E., Krzycki, J. A., Weimer, P. J., & Hegge, P. W. (1980) · Current Microbiology · doi:10.1007/bf02601907 · Cited by 123
Carbon isotope effects associated with autotrophic acetogenesis
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Growth of Pseudomonas aeruginosa in tap water in relation to utilization of substrates at concentrations of a few micrograms per liter
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Temperature and salt addition effects on the solubility behaviour of some phenolic compounds in water
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Desulfotignum phosphitoxidans sp. nov., a new marine sulfate reducer that oxidizes phosphite to phosphate
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Fermentative metabolism of substituted monoaromatic compounds by a bacterial community from anaerobic sediments
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Geomicrobiology of deep, low organic carbon sediments in the Woodlark Basin, Pacific Ocean
Wellsbury, P., Mather, I. D., & Parkes, R. J. (2002) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2002.tb00995.x · Cited by 114
Over het verdwijnen van waterstof en koolzuur onder anaerobe voorwaarden
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Extremely halophilic, methylotrophic, anaerobic bacteria
Zhilina, T. N., & Zavarzin, G. A. (1990) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1990.tb04930.x · Cited by 109
Methanogenesis at low temperatures by microflora of tundra wetland soil
Kotsyurbenko, O. R., Nozhevnikova, A. N., Soloviova, T. I., & Zavarzin, G. A. (1996) · Antonie van Leeuwenhoek · doi:10.1007/bf00641614 · Cited by 108
Online δ13C analysis of volatile fatty acids in sediment/porewater systems by liquid chromatography-isotope ratio mass spectrometry
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Methane production from bicarbonate and acetate in an anoxic marine sediment
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Clostridium scatologenes strain SL1 isolated as an acetogenic bacterium from acidic sediments.
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Fluids from the Oceanic Crust Support Microbial Activities within the Deep Biosphere
Engelen, B., Ziegelmüller, K., Wolf, L., Köpke, B., Gittel, A., Cypionka, H., Treude, T., Nakagawa, S., Inagaki, F., Lever, M. A., et al. (2008) · Geomicrobiology Journal · doi:10.1080/01490450701829006 · Cited by 105
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Carbon Isotope Fractionation during Acetoclastic Methanogenesis by Methanosaeta concilii in Culture and a Lake Sediment
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Acetoanaerobium noterae gen. nov., sp. nov.: an Anaerobic Bacterium That Forms Acetate from H2 and CO2
Sleat, R., Mah, R. A., & Robinson, R. W. (1985) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-35-1-10 · Cited by 104
Numbers, biomass and cultivable diversity of microbial populations relate to depth and borehole-specific conditions in groundwater from depths of 4–450 m in Olkiluoto, Finland
Pedersen, K., Arlinger, J., Eriksson, S., Hallbeck, A., Hallbeck, L., & Johansson, J. (2008) · The ISME Journal · doi:10.1038/ismej.2008.43 · Cited by 103
Reworking of amino acid in marine sediments: Stable carbon isotopic composition of amino acids in sediments along the Washington coast
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Evidence for methanogenic Archaea and homoacetogenic Bacteria in deep granitic rock aquifers
Kotelnikova, S., & Pedersen, K. (1997) · FEMS Microbiology Reviews · doi:10.1016/s0168-6445(97)00016-8 · Cited by 102
Carbon assimilation pathways in sulfate reducing bacteria. Formate, carbon dioxide, carbon monoxide, and acetate assimilation by Desulfovibrio baarsii
Jansen, K., Thauer, R. K., Widdel, F., & Fuchs, G. (1984) · Archives of Microbiology · doi:10.1007/bf00402132 · Cited by 101
Physiological Ecology of Clostridium glycolicum RD-1, an Aerotolerant Acetogen Isolated from Sea Grass Roots
Küsel, K., Karnholz, A., Trinkwalter, T., Devereux, R., Acker, G., & Drake, H. L. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.10.4734-4741.2001 · Cited by 100
Formation of Dimethylsulfide and Methanethiol from Methoxylated Aromatic Compounds and Inorganic Sulfide by Newly Isolated Anaerobic Bacteria
Bak, F., & Finster, K. W. (1993) · Springer eBooks · doi:10.1007/978-1-4615-2812-8_41 · Cited by 97
Recovery and Analysis of Formyltetrahydrofolate Synthetase Gene Sequences from Natural Populations of Acetogenic Bacteria
Leaphart, A. B., & Lovell, C. R. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.3.1392-1395.2001 · Cited by 97
Competition between the facultatively chemolithotrophic Thiobacillus A2, an obligately chemolithotrophic Thiobacillus and a heterotrophic spirillum for inorganic and organic substrates
Gottschal, J. C., de Vries, S. C., & Kuenen, J. G. (1979) · Archives of Microbiology · doi:10.1007/bf00425062 · Cited by 96
Function of methanofuran, tetrahydromethanopterin, and coenzyme F420 in Archaeoglobus fulgidus
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Clostridium mayombei sp. nov., an H2/CO2 acetogenic bacterium from the gut of the African soil-feeding termite, Cubitermes speciosus
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Granulibacter bethesdensis gen. nov., sp. nov., a distinctive pathogenic acetic acid bacterium in the family Acetobacteraceae
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An Experimental Model: Bacterial Specialists and Generalists Competing in Chemostats
Dykhuizen, D. E., & Davies, M. (1980) · Ecology · doi:10.2307/1936839 · Cited by 94
Characterization of methanogenic Archaea and stable isotope fractionation during methane production in the profundal sediment of an oligotrophic lake (Lake Stechlin, Germany)
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Evidence for chemiosmotic coupling of reductive dechlorination and ATP synthesis in Desulfomonile tiedjei
Mohn, W. W., & Tiedje, J. M. (1991) · Archives of Microbiology · doi:10.1007/bf00245326 · Cited by 93
Anaerobic acetate oxidation to CO2 by Desulfotomaculum acetoxidans
Spormann, A. M., & Thauer, R. K. (1988) · Archives of Microbiology · doi:10.1007/bf00408310 · Cited by 92
Clostridium methoxybenzovorans sp. nov., a new aromatic o-demethylating homoacetogen from an olive mill wastewater treatment digester
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Interrelations between sulfate-reducing and methane-producing bacteria in bottom deposits of a fresh-water lake. II. Inhibition experiments
Cappenberg, T. E. (1974) · Antonie van Leeuwenhoek · doi:10.1007/bf00394388 · Cited by 89
Formation of dimethylsulfide and methanethiol from methoxylated aromatic compounds and inorganic sulfide by newly isolated anaerobic bacteria
Bak, F., Finster, K. W., & Rothfuß, F. (1992) · Archives of Microbiology · doi:10.1007/bf00276773 · Cited by 89
Sporomusa malonica sp. nov., a homoacetogenic bacterium growing by decarboxylation of malonate or succinate
Dehning, I., Stieb, M., & Schink, B. (1989) · Archives of Microbiology · doi:10.1007/bf00416601 · Cited by 88
Genome Analyses of Three Strains of Rhodobacter sphaeroides : Evidence of Rapid Evolution of Chromosome II
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Sporomusa silvacetica sp. nov., an Acetogenic Bacterium Isolated from Aggregated Forest Soil
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Treponema denticola (ex Brumpt 1925) sp. nov., nom. rev., and Identification of New Spirochete Isolates from Periodontal Pockets
Chan, E. C. S., Siboo, R., Keng, T., Psarra, N., Hurley, R., Cheng, S.-L., & Iugovaz, I. (1993) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-43-2-196 · Cited by 87
Reclassification of the only species of the genus Desulfomonas, Desulfomonas pigra, as Desulfovibrio piger comb. nov.
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Acetogenesis from CO2 in an anoxic marine sediment
Hoehler, T. M., Albert, D. B., Alperin, M. J., & Martens, C. S. (1999) · Limnology and Oceanography · doi:10.4319/lo.1999.44.3.0662 · Cited by 82
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Characterization of Two Subsurface H 2 -Utilizing Bacteria, Desulfomicrobium hypogeium sp. nov. and Acetobacterium psammolithicum sp. nov., and Their Ecological Roles
Krumholz, L. R., Harris, S. H., Tay, S. T.-L., & Suflita, J. M. (1999) · Applied and Environmental Microbiology · doi:10.1128/aem.65.6.2300-2306.1999 · Cited by 81
Fermentative degradation of nonionic surfactants and polyethylene glycol by enrichment cultures and by pure cultures of homoacetogenic and propionate-forming bacteria
Wagener, S., & Schink, B. (1988) · Applied and Environmental Microbiology · doi:10.1128/aem.54.2.561-565.1988 · Cited by 80
Benzoate Fermentation by the Anaerobic Bacterium Syntrophus aciditrophicus in the Absence of Hydrogen-Using Microorganisms
Elshahed, M. S., & McInerney, M. J. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.12.5520-5525.2001 · Cited by 79
Carbon isotopic fractionation by plankton in the Southern Indian Ocean: relationship between δ of particulate organic carbon and dissolved carbon dioxide
Bentaleb, I., Fontugne, M., Descolas-Gros, C., Girardin, C., Mariotti, A. A., Pierre, C., Brunet, C., & Alain Poisson, B. (1998) · Journal of Marine Systems · doi:10.1016/s0924-7963(98)00028-1 · Cited by 79
New species of psychrophilic acetogens: Acetobacterium bakii sp. nov., A. paludosum sp. nov., A. fimetarium sp. nov.
Kotsyurbenko, O. R., Simankova, M. V., Nozhevnikova, A. N., Zhilina, T. N., Bolotina, N. P., Лысенко, А. М., & Osipov, G. A. (1995) · Archives of Microbiology · doi:10.1007/bf00262200 · Cited by 79
Hydrogen-Dependent Oxygen Reduction by Homoacetogenic Bacteria Isolated from Termite Guts
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Reclassification of Bacteria of the Genus Protomonas Urakami and Komagata 1984 in the Genus Methylobacterium (Patt, Cole, and Hanson) Emend. Green and Bousfield 1983
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Classification of corynebacteria associated with endocarditis (group JK) as Corynebacterium jeikeium sp. nov.
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Isolation and characterization of a new spore-forming sulfate-reducing bacterium growing by complete oxidation of catechol
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Molecular monitoring of culturable bacteria from deep-sea sediment of the Nankai Trough, Leg 190 Ocean Drilling Program
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Isolation and Characterization of the Homoacetogenic Thermophilic Bacterium Moorella glycerini sp. nov.
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Archaeoglobus fulgidus couples CO oxidation to sulfate reduction and acetogenesis with transient formate accumulation
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Acetogenesis at Low Temperature
Nozhevnikova, A. N., Kotsyurbenko, O. R., & Simankova, M. V. (1994) · Springer eBooks · doi:10.1007/978-1-4615-1777-1_15 · Cited by 74
Demethylation and degradation of phenylmethylethers by the sulfide-methylating homoacetogenic bacterium strain TMBS 4
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Methanol utilization by a novel thermophilic homoacetogenic bacterium, Moorella mulderi sp. nov., isolated from a bioreactor
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The Evolution of Acetyl-CoA Synthase
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Hydrogen utilization by clostridia in sewage sludge
Ohwaki, K., & Hungate, R. E. (1977) · Applied and Environmental Microbiology · doi:10.1128/aem.33.6.1270-1274.1977 · Cited by 67
Expression profiles of fhs (FTHFS) genes support the hypothesis that spirochaetes dominate reductive acetogenesis in the hindgut of lower termites
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Distribution of culturable microorganisms in Fennoscandian Shield groundwater
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Metabolism of the 18O-methoxy substituent of 3-methoxybenzoic acid and other unlabeled methoxybenzoic acids by anaerobic bacteria
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Provenance, Stratigraphic Architecture, and Hydrogeologic Influence of Turbidites on the Mid-Ocean Ridge Flank of Northwestern Cascadia Basin, Pacific Ocean
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Acetobacterium wieringae sp. nov., a new species producing acetic acid from molecular hydrogen and carbon dioxide
Braun, M., & Gottschalk, G. (1982) · Zentralblatt für Bakteriologie Mikrobiologie und Hygiene I Abt Originale C Allgemeine angewandte und ökologische Mikrobiologie · doi:10.1016/s0721-9571(82)80017-3 · Cited by 66
Biological production of alcohols from coal through indirect liquefaction
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Quantification of co-occurring reaction rates in deep subseafloor sediments
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Authors: Lever, M. A., Heuer, V. B., Morono, Y., Masui, N., Schmidt, F., Alperin, M. J., Inagaki, F., Hinrichs, K.-U., & Teske, A.
Affiliations: University of North Carolina at Chapel Hill (US)
University of Bremen (DE)
Japan Agency for Marine-Earth Science and Technology (JP)
ORCID: Lever, Mark A.
Heuer, Verena B.
Morono, Yuki
Schmidt, Frauke
Inagaki, Fumio
Hinrichs, Kai-Uwe
Teske, Andreas
Venue: Geomicrobiology Journal
Publisher: Informa UK Limited
Published: 2010-02-26
Volume: 27
Issue: 2
Pages: 183-211
ISSN: 0149-0451 (ISSN-L)
1521-0529
DOI: 10.1080/01490450903456681
OpenAlex: W1982075342
Cited by: 86
References: 265
Citations by year: 2026: 2 · 2025: 2 · 2024: 1 · 2023: 5 · 2022: 1 · 2021: 4 · 2020: 5 · 2019: 9 · 2018: 3 · 2017: 6 · 2016: 8 · 2015: 6 · 2014: 8 · 2013: 7 · 2012: 7
FWCI: 7.23
Type: journal article
Language: en
Open access: closed
Locations: Geomicrobiology Journal (publishedVersion)
Publication Database GFZ (GFZ German Research Centre for Geosciences) (submittedVersion)
Topics: Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
Physical Sciences › Environmental Science › Environmental Engineering › Microbial Fuel Cells and Bioremediation
Keywords: acetogenesis, Juan de Fuca Ridge, lignin monomers, fermentation substrate, molecular hydrogen, sulfate reduction, methanogenesis, marine sediment geochemistry

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Acetogenesis in Deep Subseafloor Sediments of The Juan de Fuca Ridge Flank: A Synthesis of Geochemical, Thermodynamic, and Gene-based Evidence

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