Intestinal phages interact with bacteria and are involved in human diseases

Diversity of the Human Intestinal Microbial Flora

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A metagenome-wide association study of gut microbiota in type 2 diabetes

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Gut metagenome in European women with normal, impaired and diabetic glucose control

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Short-chain fatty acids stimulate glucagon-like peptide-1 secretion via the G-protein-coupled receptor FFAR2

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Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

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Lysogenic Conversion by a Filamentous Phage Encoding Cholera Toxin

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Disease-Specific Alterations in the Enteric Virome in Inflammatory Bowel Disease

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Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection

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Viruses in the faecal microbiota of monozygotic twins and their mothers

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The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation

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Efficacy and tolerability of a cocktail of bacteriophages to treat burn wounds infected by Pseudomonas aeruginosa (PhagoBurn): a randomised, controlled, double-blind phase 1/2 trial

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Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system

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An expansion of rare lineage intestinal microbes characterizes rheumatoid arthritis

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Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells

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Bacteriophage targeting of gut bacterium attenuates alcoholic liver disease

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Sequence-specific antimicrobials using efficiently delivered RNA-guided nucleases

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Phage selection restores antibiotic sensitivity in MDR Pseudomonas aeruginosa

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The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific

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Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine

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Lytic to temperate switching of viral communities

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Communication between viruses guides lysis–lysogeny decisions

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The Bacteroides fragilis toxin gene is prevalent in the colon mucosa of colorectal cancer patients

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Contribution of bacterial outer membrane vesicles to innate bacterial defense

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Shiga-Like Toxin-Converting Phages from Escherichia coli Strains That Cause Hemorrhagic Colitis or Infantile Diarrhea

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Expansion of Bacteriophages Is Linked to Aggravated Intestinal Inflammation and Colitis

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Massive expansion of human gut bacteriophage diversity

Camarillo-Guerrero, L. F., Almeida, A., Rangel-Pineros, G., Finn, R. D., & Lawley, T. D. (2021) · Cell · doi:10.1016/j.cell.2021.01.029 · Cited by 594

Dynamic modulation of the gut microbiota and metabolome by bacteriophages in a mouse model

Hsu, B. B., Gibson, T. E., Yeliseyev, V., Liu, Q., Lyon, L., Bry, L., Silver, P. A., & Gerber, G. K. (2019) · Cell Host & Microbe · doi:10.1016/j.chom.2019.05.001 · Cited by 573

Oral Phage Therapy of Acute Bacterial Diarrhea With Two Coliphage Preparations: A Randomized Trial in Children From Bangladesh

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Fecal Microbiota Composition Differs Between Children With β-Cell Autoimmunity and Those Without

de Goffau, M. C., Luopajärvi, K., Knip, M., Ilonen, J., Ruohtula, T., Härkönen, T., Orivuori, L., Hakala, S., Welling, G. W., Harmsen, H. J. M., et al. (2012) · Diabetes · doi:10.2337/db12-0526 · Cited by 563

Healthy human gut phageome

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A DNA nanodevice-based vaccine for cancer immunotherapy

Liu, S., Jiang, Q., Zhao, X., Zhao, R., Wang, Y., Wang, Y., Liu, J., Shang, Y., Zhao, S., Wu, T., et al. (2020) · Nature Materials · doi:10.1038/s41563-020-0793-6 · Cited by 555

Antibiotic treatment expands the resistance reservoir and ecological network of the phage metagenome

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BREX is a novel phage resistance system widespread in microbial genomes

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A novel mechanism for the biogenesis of outer membrane vesicles in Gram-negative bacteria

Roier, S., Zingl, F. G., Çakar, F., Durakovic, S., Kohl, P., Eichmann, T. O., Klug, L., Gadermaier, B., Weinzerl, K., Prassl, R., et al. (2016) · Nature Communications · doi:10.1038/ncomms10515 · Cited by 500

Phage-guided modulation of the gut microbiota of mouse models of colorectal cancer augments their responses to chemotherapy

Zheng, D.-W., Dong, X., Pan, P., Chen, K.-W., Fan, J.-X., Cheng, S.-X., & Zhang, X.-Z. (2019) · Nature Biomedical Engineering · doi:10.1038/s41551-019-0423-2 · Cited by 495

Synergy between the Host Immune System and Bacteriophage Is Essential for Successful Phage Therapy against an Acute Respiratory Pathogen

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Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities

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Temperate and lytic bacteriophages programmed to sensitize and kill antibiotic-resistant bacteria

Yosef, I., Manor, M., Kiro, R., & Qimron, U. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1500107112 · Cited by 483

Molecular and Evolutionary Determinants of Bacteriophage Host Range

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Safety of bacteriophage therapy in severe Staphylococcus aureus infection

Fabijan, A. P., Lin, R. C. Y., Ho, J., Maddocks, S., Zakour, N. L. B., Iredell, J. R., Westmead Bacteriophage Therapy Team, Khalid, A., Venturini, C., Chard, R., et al. (2020) · Nature Microbiology · doi:10.1038/s41564-019-0634-z · Cited by 474

Prophages mediate defense against phage infection through diverse mechanisms

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Engineering Modular Viral Scaffolds for Targeted Bacterial Population Editing

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Gut Dysbiosis and Detection of “Live Gut Bacteria” in Blood of Japanese Patients With Type 2 Diabetes

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Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses

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Application of a Neutral Community Model To Assess Structuring of the Human Lung Microbiome

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The gene for toxic shock toxin is carried by a family of mobile pathogenicity islands in Staphylococcus aureus

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Landscapes of bacterial and metabolic signatures and their interaction in major depressive disorders

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Cross-reactivity between tumor MHC class I–restricted antigens and an enterococcal bacteriophage

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Bacteriophage Transcytosis Provides a Mechanism To Cross Epithelial Cell Layers

Nguyen, S., Baker, K., Padman, B. S., Patwa, R. R., Dunstan, R. A., Weston, T. A., Schlosser, K., Bailey, B., Lithgow, T. J., Lazarou, M., et al. (2017) · mBio · doi:10.1128/mbio.01874-17 · Cited by 394

Alterations in Enteric Virome Are Associated With Colorectal Cancer and Survival Outcomes

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Bacteriophage transfer during faecal microbiota transplantation in Clostridium difficile infection is associated with treatment outcome

Zuo, T., Wong, S. H., Lam, K., Lui, R. N.-S., Cheung, K., Tang, W., Ching, J. Y. L., Chan, P. K. S., Chan, M. C. W., Wu, J. C., et al. (2017) · Gut · doi:10.1136/gutjnl-2017-313952 · Cited by 376

A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity

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Fecal microbiota transplantation for patients with steroid-resistant acute graft-versus-host disease of the gut

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DISARM is a widespread bacterial defence system with broad anti-phage activities

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Statistical structure of host–phage interactions

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Phage-Mediated Intergeneric Transfer of Toxin Genes

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Diagnostic potential and interactive dynamics of the colorectal cancer virome

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The stepwise assembly of the neonatal virome is modulated by breastfeeding

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Bioinorganic hybrid bacteriophage for modulation of intestinal microbiota to remodel tumor-immune microenvironment against colorectal cancer

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Intestinal virome changes precede autoimmunity in type I diabetes-susceptible children

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Gut microbiota and GLP-1

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Standardized bacteriophage purification for personalized phage therapy

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Faecal virome transplantation decreases symptoms of type 2 diabetes and obesity in a murine model

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Role of the Gut Microbiome in Modulating Arthritis Progression in Mice

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Global phylogeography and ancient evolution of the widespread human gut virus crAssphage

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In Vivo Targeting of Clostridioides difficile Using Phage-Delivered CRISPR-Cas3 Antimicrobials

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A cocktail of three virulent bacteriophages prevents Vibrio cholerae infection in animal models

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Intestinal microbiota in health and disease

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Escherichia coli K1's Capsule Is a Barrier to Bacteriophage T7

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Molecular genetics of SaPI1 – a mobile pathogenicity island in Staphylococcus aureus

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A human gut phage catalog correlates the gut phageome with type 2 diabetes

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Stool Microbiota at Neutrophil Recovery Is Predictive for Severe Acute Graft vs Host Disease After Hematopoietic Cell Transplantation

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Dual-Surface-Modified Bacteriophage MS2 as an Ideal Scaffold for a Viral Capsid-Based Drug Delivery System

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The Spatial Heterogeneity of the Gut Limits Predation and Fosters Coexistence of Bacteria and Bacteriophages

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Vibrio cholerae Outer Membrane Vesicles Inhibit Bacteriophage Infection

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Modulation of Inflammatory Arthritis in Mice by Gut Microbiota Through Mucosal Inflammation and Autoantibody Generation

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A jumbo phage that forms a nucleus-like structure evades CRISPR–Cas DNA targeting but is vulnerable to type III RNA-based immunity

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Efficacy and Pharmacokinetics of Bacteriophage Therapy in Treatment of Subclinical Staphylococcus aureus Mastitis in Lactating Dairy Cattle

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Therapeutic Characterization and Efficacy of Bacteriophage Cocktails Infecting Escherichia coli, Klebsiella pneumoniae, and Enterobacter Species

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Acquisition of Phage Sensitivity by Bacteria through Exchange of Phage Receptors

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Phage‐Enabled Nanomedicine: From Probes to Therapeutics in Precision Medicine

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The Battle Within: Interactions of Bacteriophages and Bacteria in the Gastrointestinal Tract

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The Rex system of bacteriophage lambda: tolerance and altruistic cell death.Preprint

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Phase Variable O Antigen Biosynthetic Genes Control Expression of the Major Protective Antigen and Bacteriophage Receptor in Vibrio cholerae O1

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Pseudomonas aeruginosa defends against phages through type IV pilus glycosylation

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Intestinal Virome in Patients With Alcoholic Hepatitis

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