Cited by 158Cellular transport and secretionUbiquitin and proteasome pathwaysProtein Structure and Dynamics

Epsin 1 Undergoes Nucleocytosolic Shuttling and Its Eps15 Interactor Nh2-Terminal Homology (Enth) Domain, Structurally Similar to Armadillo and Heat Repeats, Interacts with the Transcription Factor Promyelocytic Leukemia Zn2+ Finger Protein (Plzf)

Open access
Hyman, Joel, Chen, Hong, Di Fiore, Pier Paolo, De Camilli, Pietro, Brunger, Axel T.·2000·The Journal of Cell Biology

Abstract

Epsin (Eps15 interactor) is a cytosolic protein involved in clathrin-mediated endocytosis via its direct interactions with clathrin, the clathrin adaptor AP-2, and Eps15. The NH2-terminal portion of epsin contains a phylogenetically conserved module of unknown function, known as the ENTH domain (epsin NH2-terminal homology domain). We have now solved the crystal structure of rat epsin 1 ENTH domain to 1.8 Å resolution. This domain is structurally similar to armadillo and Heat repeats of β-catenin and karyopherin-β, respectively. We have also identified and characterized the interaction of epsin 1, via the ENTH domain, with the transcription factor promyelocytic leukemia Zn2+ finger protein (PLZF). Leptomycin B, an antifungal antibiotic, which inhibits the Crm1- dependent nuclear export pathway, induces an accumulation of epsin 1 in the nucleus. These findings suggest that epsin 1 may function in a signaling pathway connecting the endocytic machinery to the regulation of nuclear function.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1083/jcb.149.3.537

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The first alpha helix (α0) of the N-terminal ENTH domain can insert into the membrane and induce curvature formation.

    “In addition, the first alpha helix (α0) of the N-terminal ENTH domain can insert into the membrane and induce curvature formation (Fig. 4a)89,90 – this function of Epsin1 is thought to be important for endocytosis.”

    From Membrane compression by synaptic vesicle exocytosis triggers ultrafast endocytosis (2023) · cites this paper as [89]

    The Results section, “General Features of the Structure” (page unavailable), describes the ENTH domain’s helices but does not identify an α0 helix or report membrane insertion or curvature formation. The Introduction says the ENTH domain’s function was unknown; searches for membrane insertion and curvature found no passage addressing the claimed mechanism. (LLM, conf=0.76)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 54

  1. Abrahams J.P. Leslie A.G.W. Methods used in the structure determination of bovine mitochondrial F1 ATPase Acta Crystallogr. D52 1996 30 42 15299723
  2. Barth A.I.M. Näthke I.S. Nelson W.J. Cadherins, catenins and APC proteininterplay between cytoskeletal complexes and signalling pathways Curr. Opin. Cell Biol. 9 1997 683 690 9330872
  3. Benmerah A. Lamaze C. Bègue B. Schmid S.L. Dautry-Varsat A. Cerf-Bensussan N. AP-2/Eps15 interaction is required for receptor mediated endocytosis J. Cell Biol. 140 1998 1055 1062 9490719 PMC2132690
  4. Bricogne G. Bayesian statistical viewpoint on structure determinationbasic concepts and examples Methods Enzymol. 276 1997 361 423 27799106
  5. Brunger A.T. Free R valuea novel statistical quantity for assessing the accuracy of crystal structures Nature. 355 1992 472 475 18481394
  6. Brunger A.T. Adams P.D. Clore G.M. DeLano W.L. Gros P. Grosse-Kunstleve R.W. Jiang J.S. Kuszewski J. Nilges M. Pannu N.S. Crystallography and NMR systema new software suite for macromolecular structure determination Acta Crystallogr. D54 1998 905 921 9757107
  7. Bullions L.C. Levine A.J. The role of beta-catenin in cell adhesion, signal transduction, and cancer Curr. Opin. Oncol. 10 1998 81 87 9466489
  8. Chen H. Fre S. Slepnev V.I. Capua M.R. Takei K. Butler M.H. Di Fiore P.P. DeCamilli P. Epsin is an EH-domain–binding protein implicated in clathrin mediated endocytosis Nature 394 1998 793 797 9723620
  9. Chook Y.M. Blobel G. Structure of the nuclear transport complex karyopherin-β2-Ran·GppNHp Nature. 399 1999 230 237 10353245
  10. Cingolini G. Petosa C. Weis K. Müller C.W. Structure of importin-α bound to the IBB domain of importin-β Nature. 399 1999 221 229 10353244
  11. Daniel J.M. Reynolds A.B. The catenin p120ctn interacts with Kaiso, a novel BTB/POZ domain zinc finger transcription factor Mol. Cell. Biol. 19 1999 3614 3623 10207085 PMC84161
  12. Doria M. Salcini A.F. Colombo E. Parslow T.G. Pelicci P.G. Di Fiore P.P. The EH-based interaction between Eps15 and Hrb connects the molecular machinery of endocytosis to that of nucleocytosolic transport J. Cell Biol. 147 1999 1379 1384 10613896 PMC2174238
  13. Görlich D. Transport into and out of the cell nucleus EMBO (Eur. Mol. Biol. Organ.) J. 17 1998 2721 2727 PMC1170612 9582265
  14. Grignani F. De Matteis S. Nervi C. Tomassoni L. Gelmetti V. Cioce M. Fanelli M. Ruthardt M. Ferrara F.F. Zamir I. Fusion proteins of the retinoic acid receptor-α recruit histone deacetylase in promyelocytic leukaemia Nature. 391 1998 815 818 9486655
  15. Grosse-Kunstleve R.W. Brünger A.T. A highly automated heavy-atom search procedure for macromolecular structures Acta Crystallogr. D55 1999 1568 1577 10489451
  16. Groves M.R. Hanlon N. Turowski P. Hemmings B.A. Barford D. The structure of the protein phosphatase 2A PR65/A subunit reveals the conformation of its 15 tandemly repeated HEAT motifs Cell. 96 1999 99 110 9989501
  17. Hendrickson W.A. Stereochemically restrained refinement of macromolecular structures Methods Enzymol. 115 1985 252 270 3841182
  18. Hendrickson W.A. Determination of macromolecular structures from anomalous diffraction of synchrotron radiation Science. 254 1991 51 58 1925561
  19. Huber H.H. Nelson W.J. Weis W.I. Three-dimensional structure of the armadillo repeat region of β-catenin Cell. 90 1997 871 882 9298899
  20. Hussain N.K. Yamabhai M. Ramjaun A.R. Guy A.M. Baranes D. O'Bryan J.P. Der C.J. Kay B.K. McPherson P.S. Splice variants of intersectin are components of the endocytic machinery in neurons and nonneuronal cells J. Biol. Chem. 274 1999 15671 15677 10336464
  21. Jones T.A. Zou J.Y. Cowan S.W. Kjeldgaard M.O. Improved methods for building protein models in electron density maps and the location of errors in these models Acta Crystallogr. A47 1991 110 119 2025413
  22. Juven-Gershon T. Oren M. Mdm2the ups and downs Mol. Med. 5 1999 71 83 10203572 PMC2230410
  23. Juven-Gershon T. Shifman O. Unger T. Elkes A. Haupt Y. Oren M. The Mdm2 oncoprotein interacts with the cell fate regulator Numb Mol. Cell. Biol. 18 1998 3974 3982 9632782 PMC108982
  24. Kay B.K. Yamabhai M. Wendland B. Emr S.D. Identification of a novel domain shared by putative components of the endocytic and cytoskeletal machinery Protein Science. 8 1999 435 438 10048338 PMC2144257
  25. Kudo N. Matsumori M. Taoka H. Fujiwara D. Schreiner E. Wolff B. Yoshida M. Horinouchi S. Leptomycin B inactivates CRM1/exportin 1 by covalent modification at a cysteine residue in the central conserved region Proc. Natl. Acad. Sci. USA. 96 1999 9112 9117 10430904 PMC17741
  26. Leahy D.J. Erickson H.P. Aukhil I. Joshi P. Hendrickson W.A. Crystallization of a fragment of human fibronectinintroduction of methionine by site-directed mutagenesis to allow phasing via selenomethionine Proteins. 19 1994 48 54 8066086
  27. Li J.Y. English M.A. Ball H.J. Yeyati P.L. Waxman S. Licht J.D. Sequence-specific binding and transcriptional regulation by the promyelocytic leukaemia zinc finger protein J. Biol. Chem. 272 1997 22447 22455 9278395
  28. Livingston C.D. Barton G.J. Protein sequence alignmentsa strategy for the hierarchical analysis of residue conservation CABIOS. 9 1993 745 756 8143162
  29. Matthews B.W. Solvent content of protein crystals J. Mol. Biol. 33 1968 491 497 5700707
  30. Nakashima S. Morinaka K. Kayoma S. Ikeda M. Kishida M. Okawa K. Iwamatsu A. Kishida S. Kikuchi A. Small G protein Ral and its downstream molecules regulate endocytosis of EGF and insulin receptors EMBO (Eur. Mol. Biol. Organ.) J. 18 1999 3629 3642 PMC1171441 10393179
  31. Nakielny S. Dreyfuss G. Transport of proteins and RNAs in and out of the nucleus Cell. 99 1999 677 690 10619422
  32. Nemoto Y. Arribas M. Haffner C. DeCamilli P. Synaptojanin 2, a novel synaptojanin isoform with a distinct targetting domain and expression pattern J. Biol. Chem. 272 1997 30817 30821 9388224
  33. Nicholls A. Sharp K. Honig B. Protein folding and associationinsights from the interfacial and thermodynamic properties of hydrocarbons Proteins. 11 1991 281 296 1758883
  34. Nishi K. Yoshida M. Fujiwara D. Nishikawa M. Horinouchi S. Beppu T. Leptomycin B targets a regulatory cascade of crm1, a fission yeast nuclear protein, involved in control of higher order chromosome structure and gene expression J. Biol. Chem. 269 1994 6320 6324 8119981
  35. Otwinowski Z. Minor W. Processing of x-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326 27754618
  36. Owen D.J. Vallis Y. Noble M.E.M. Hunter J.B. Dafforn T.R. Evans P.R. McMahon H.T. A structural explanation for the binding of multile ligands by the α-adaptin appendage domain Cell 97 1999 805 815 10380931
  37. Pannu N.S. Read R.J. Incorporation of prior phase information strengthens maximum likelihood structural refinement Acta Crystallogr. D54 1998 1285 1294 10089505
  38. Pemberton L.F. Blobel G. Rosenblum J.S. Transport routes through the nuclear pore complex Curr. Opin. Cell Biol. 10 1998 392 399 9640541
  39. Peifer M. Polakis P. Wnt signaling in oncogenesis and embryogenesisa look outside the nucleus Science. 287 2000 1606 1609 10733430
  40. Radu A. Moore M.S. Blobel G. The peptide repeat domain of nucleoporin Nup98 functions as a docking site in transport across the nuclear pore complex Cell. 81 1995 215 222 7736573
  41. Rice L.R. Brünger A.T. Torsion angle dynamicsreduced variable conformational sampling enhances crystallographic structure refinement Proteins. 19 1994 277 290 7984624
  42. Rosenthal J.A. Chen H. Slepnev V.I. Pellegrini L. Salcini A.E. Di Fiore P.P. De Camilli P. The epsins define a family of proteins that interact with components of the clathrin coat and contain a new protein module J. Biol. Chem 234 1999 33959 33965 10567358
  43. Rothman J.E. Wieland F.T. Protein sorting by transport vesicles Science. 272 1996 227 234 8602507
  44. Ruthardt M. Orleth A. Tomassoni L. Puccetti E. Riganelli D. Alcalay M. Mannucci R. Nicoletti I. Grignani F. Fagioli M. Pelicci P.G. The acute promyelocytic leukaemia specific PML and PZL proteins localize to adjacent and functionally distinct nuclear bodies Oncogene. 16 1998 1945 1953 9591778
  45. Salcini E.A. Confalonieri S. Doria M. Santolini E. Tassi E. Minenkova O. Cesareni G. Pelicci P.G. DiFiore P.P. Binding specificity and in vivo targets of the EH domain, a novel protein–protein interaction module Genes Devel. 11 1997 2239 2249 9303539 PMC275390
  46. Sengar A.S. Wang W. Bishay J. Cohen S. Egan S.E. The EH and SH3 domain Ese proteins regulate endocytosis by linking to dynamin and Eps15 EMBO (Eur. Mol. Biol. Organ.) J. 18 1999 1159 1171 PMC1171207 10064583
  47. Tao Y.S. Edwards R.A. Tubb B. Wang S. Bryan J. McCrea P.D. β-Catenin associates with the actin-bundling protein fascin in a noncadherin complex J. Cell Biol. 134 1996 1271 1281 8794867 PMC2120989
  48. Thompson J.D. Higgins D.G. Gibson T.J. CLUSTAL Wimproving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680 7984417 PMC308517
  49. Traub L.M. Downs M.A. Westrich J.L. Fremont D.H. Crystal structure of the α appendage of AP-2 reveals a recruitment platform for clathrin-coat assembly Proc. Natl. Acad. Sci. USA. 96 1999 8907 8912 10430869 PMC17706
  50. Ullman K.S. Powers M.A. Forbes D.J. Nuclear export receptors from importin to exportin Cell. 90 1997 967 970 9323123
  51. Van Hengel J. Vanhoenacker P. Staes K. Van Roy F. Nuclear localization of the p120ctn armadillo-like catenin is counteracted by nuclear export signal and E-cadherin expression Proc Natl. Acad. Sci. USA. 96 1999 7980 7985 PMC22173 10393933
  52. Vriend G. WHAT IFa molecular modeling and drug design program J. Mol. Graph. 8 1990 52 56 2268628
  53. Wendland B. Steece K.E. Emr S.D. Yeast epsins contain an essential N-terminal ENTH domain, bind clathrin and are required for endocytosis EMBO (Eur. Mol. Biol. Organ.) J. 18 1999 4383 4393 PMC1171513 10449404
  54. Willert K. Nusse R. β-catenina key mediator of Wnt signalling Curr. Opin. Genes Dev. 8 1998 95 102 9529612

Cited by

Sorted by citations

Authors
Hyman, J., Chen, H., Di Fiore, P. P., De Camilli, P., & Brunger, A. T.
Affiliations
  • Howard Hughes Medical Institute (US)
  • dDepartment of Experimental Oncology, European Institute of Oncology, Milan, Italy
  • bDepartment of Cell Biology, Yale University, New Haven, Connecticut 06520
  • aDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520
Venue
The Journal of Cell Biology
Published
2000-05-01
Volume
149
Issue
3
Pages
537-546
ISSN
  • 0021-9525 (ISSN-L)
  • 1540-8140
OpenAlex
W2143975798
Cited by
158
References
2
Citations by year
2025: 2 · 2023: 2 · 2022: 2 · 2021: 1 · 2020: 1 · 2019: 2 · 2018: 5 · 2017: 1 · 2016: 2 · 2015: 5 · 2013: 7 · 2012: 7
FWCI
7.72
Type
journal article
Language
en
Open access
Licence
cc-by-nc-sa
Locations
  • The Journal of Cell Biology (publishedVersion)
  • PubMed Central (publishedVersion, cc-by-nc-sa)
  • PubMed (publishedVersion)
  • OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information) (submittedVersion)
Funders
  • U.S. Department of Energy
  • Yale University
  • National Institutes of Health (CA-46128)
  • National Cancer Institute (P01CA046128, CA46128)
  • National Institute of Neurological Disorders and Stroke (NS36252)
  • National Center for Research Resources
  • Biological and Environmental Research
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
Keywords
ENTH domain, armadillo repeats, HEAT repeats, crystal structure, PLZF, clathrin-mediated endocytosis, leptomycin B, transcription factor regulation, nuclear accumulation
MeSH terms
Amino Acid Sequence, Animals, Calcium-Binding Proteins, Carrier Proteins, Cell Line, Cell Nucleus, Cytoskeletal Proteins, Cytosol, DNA-Binding Proteins, Fluorescent Antibody Technique, Models, Molecular, Molecular Sequence Data, Neuropeptides, Phosphoproteins, Protein Binding, Transcription Factors, Trans-Activators, Zinc Fingers, Sequence Alignment, Crystallography, X-Ray, Insect Proteins, Drosophila Proteins, Vesicular Transport Proteins, Adaptor Proteins, Vesicular Transport, beta Catenin, Armadillo Domain Proteins, Rats

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review