Cited by 157

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Rab9 GTPase Regulates Late Endosome Size and Requires Effector Interaction for Its Stability

Ganley, Ian G., Carroll, Kate, Bittova, Lenka, Pfeffer, Suzanne·2004·Molecular Biology of the Cell

Abstract

Rab9 GTPase resides in a late endosome microdomain together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kDa (TIP47). To explore the importance of Rab9 for microdomain establishment, we depleted the protein from cultured cells. Rab9 depletion decreased late endosome size and reduced the numbers of multilamellar and dense-tubule–containing late endosomes/lysosomes, but not multivesicular endosomes. The remaining late endosomes and lysosomes were more tightly clustered near the nucleus, implicating Rab9 in endosome localization. Cells displayed increased surface MPRs and lysosome-associated membrane protein 1. In addition, cells showed increased MPR synthesis in conjunction with MPR missorting to the lysosome. Surprisingly, Rab9 stability on late endosomes required interaction with TIP47. Rabs are thought of as independent, prenylated entities that reside either on membranes or in cytosol, bound to GDP dissociation inhibitor. These data show that Rab9 stability is strongly influenced by a specific effector interaction. Moreover, Rab9 and the proteins with which it interacts seem critical for the maintenance of specific late endocytic compartments and endosome/lysosome localization.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1091/mbc.e04-08-0747

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 41

  1. Alexandrov, K., Horiuchi, H., Steele-Mortimer, O., Seabra, M.C., and Zerial, M. (1994). Rab escort protein-1 is a multifunctional protein that accompanies newly prenylated rab proteins to their target membranes.EMBO J.13, 5262-5273. · DOI
  2. Babst, M., Katzmann, D.J., Estepa-Sabal, E.J., Meerloo, T., and Emr, S.D. (2002a). Escrt-III: an endosome-associated heterooligomeric protein complex required for MVB sorting.Dev. Cell3, 271-282. · DOI
  3. Babst, M., Katzmann, D.J., Snyder, W.B., Wendland, B., and Emr, S.D. (2002b). Endosome-associated complex, ESCRT-II, recruits transport machinery for protein sorting at the multi-vesicular body.Dev. Cell3, 283-289. · DOI
  4. Bache, K.G., Brech, A., Mehlum, A., and Stenmark, H. (2003). Hrs regulates multi-vesicular body formation via ESCRT recruitment to endosomes.J. Cell Biol.162, 435-442. · DOI
  5. Barbero, P., Buell, E., Zulley, S., and Pfeffer, S.R. (2001). TIP47 is not a component of lipid droplets.J. Biol. Chem.276, 24348-24351. · DOI
  6. Barbero, P., Bittova, L., and Pfeffer, S.R. (2002). Visualization of Rab9-mediated vesicle transport from endosomes to the trans-Golgi in living cells.J. Cell Biol.156, 511-518. · DOI
  7. Bucci, C., Parton, R.G., Mather, I.H., Stunnenberg, H., Simons, K., Hoflack, B., and Zerial, M. (1992). The small GTPase rab5 functions as a regulatory factor in the early endocytic pathway.Cell70, 715-728. · DOI
  8. Carroll, K.S., Hanna, J., Simon, I., Krise, J., Barbero, P., and Pfeffer, S.R. (2001). Role of Rab9 GTPase in facilitating receptor recruitment by TIP47.Science292, 1373-1376. · DOI
  9. Dell'Angelica, E.C., Aguilar, R.C., Wolins, N., Hazelwood, S., Gahl, W.A., and Bonifacino, J.S. (2000). Molecular characterization of the protein encoded by the Hermansky-Pudlak syndrome type 1 gene.J. Biol. Chem.275, 1300-1306. · DOI
  10. Dell'Angelica, E.C., Shotelersuk, V., Aguilar, R.C., Gahl, W.A., and Bonifacino, J.S. (1999). Altered trafficking of lysosomal proteins in Hermansky-Pudlak syndrome due to mutations in the beta 3A subunit of the AP-3 adaptor.Mol. Cell3, 11-21. · DOI
  11. Diaz, E., and Pfeffer, S.R. (1998). TIP47: a cargo selection device for mannose 6-phosphate receptor trafficking.Cell93, 433-443. · DOI
  12. Diaz, E., Schimmoller, F., and Pfeffer, S.R. (1997). A novel Rab9 effector required for endosome-to-TGN transport.J. Cell Biol.138, 283-290. · DOI
  13. Dintzis, S.M., Velculescu, V.E., and Pfeffer, S.R. (1994). Receptor extracellular domains may contain trafficking information. Studies of the 300-kDa mannose 6-phosphate receptor.J. Biol. Chem.269, 12159-12166. · DOI
  14. Elbashir, S.M., Harborth, J., Lendeckel, W., Yalcin, A., Weber, K., and Tuschl, T. (2001). Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.Nature411, 494-498. · DOI · Paper page
  15. Feng, Y., Press, B., and Wandinger Ness, A.)1995). Rab7: an important regulator of late endocyutic membrane traffic.J. Cell Biol.131, 1435-1452. · DOI
  16. Griffiths, G., Hoflack, B., Simons, K., Mellman, I., and Kornfeld, S. (1988). The mannose 6-phosphate receptor and the biogenesis of lysosomes.Cell52, 329-341. · DOI
  17. Griffiths, G., Matteoni, R., Back, R., and Hoflack, B. (1990). Characterization of the cation-independent mannose 6-phosphate receptor-enriched prelysosomal compartment in NRK cells.J. Cell Sci.95, 441-461. · DOI
  18. Hanna, J., Carroll, K., and Pfeffer, S.R. (2002). Identification of residues in TIP47 essential for Rab9 binding.Proc. Natl. Acad. Sci. USA99, 7450-7454. · DOI
  19. Itin, C., Rancano, C., Nakajima, Y., and Pfeffer, S.R. (1997). A novel assay reveals a role for soluble N-ethylmaleimide-sensitive fusion attachment protein in mannose 6-phosphate receptor transport from endosomes to the trans Golgi network.J. Biol. Chem.272, 27737-27744. · DOI
  20. 10.1091/mbc.10.7.2191 · DOI
  21. Katzmann, D.J., Babst, M., and Emr, S.D. (2001). Ubiquitin-dependent sorting into the multi-vesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I.Cell106, 145-155. · DOI
  22. Kleijmeer, M.et al. (2001). Reorganization of multi-vesicular bodies regulates M.H.C. class II antigen presentation by dendritic cells.J. Cell Biol.155, 53-63. · DOI
  23. Kornfeld, S. (1992). Structure and function of the mannose 6-phosphate/insulinlike growth factor II receptors.Annu. Rev. Biochem.61, 307-330. · DOI
  24. Krise, J.P., Sincock, P.M., Orsel, J.G., and Pfeffer, S.R. (2000). Quantitative analysis of TIP47-receptor cytoplasmic domain interactions: implications for endosome-to-trans Golgi network trafficking.J. Biol. Chem.275, 25188-25193. · DOI
  25. Lippincott-Schwartz, J., and Fambrough, D.M. (1987). Cycling of the integral membrane glycoprotein, LEP100, between plasma membrane and lysosomes: kinetic and morphological analysis.Cell49, 669-677. · DOI
  26. Lombardi, D., Soldati, T., Riederer, M.A., Goda, Y., Zerial, M., and Pfeffer, S.R. (1993). Rab9 functions in transport between late endosomes and the trans Golgi network.EMBO J.12, 677-682. · DOI
  27. Miaczynska, M., and Zerial, M. (2002). Mosaic organization of the endocytic pathway.Exp. Cell Res.272, 8-14. · DOI
  28. Orsel, J.G., Sincock, P.M., Krise, J.P., and Pfeffer, S.R. (2000). Recognition of the 300-kDa mannose 6-phosphate receptor cytoplasmic domain by 47-kDa tail-interacting protein.Proc. Natl. Acad. Sci. USA97, 9047-9051. · DOI
  29. Pfeffer, S. (2003). Membrane domains in the secretory and endocytic pathways.Cell112, 507-517. · DOI
  30. Riederer, M.A., Soldati, T., Shapiro, A.D., Lin, J., and Pfeffer, S.R. (1994). Lysosome biogenesis requires Rab9 function and receptor recycling from endosomes to the trans-Golgi network.J. Cell Biol.125, 573-582. · DOI
  31. Rohrer, J., Schweizer, A., Johnson, K.F., and Kornfeld, S. (1995). A determinant in the cytoplasmic tail of the cation-dependent mannose 6-phosphate receptor prevents trafficking to lysosomes.J. Cell Biol.130, 1297-1306. · DOI
  32. Sanford, J.C., Yu, J., Pan, J.Y., and Wessling-Resnick, M. (1995). GDP dissociation inhibitor serves as a cytosolic acceptor for newly synthesized and prenylated Rab5.J. Biol. Chem.270, 26904-26909. · DOI
  33. Seaman, M.N. (2004). Cargo-selective endosomal sorting for retrieval to the Golgi requires retromer.J. Cell Biol.165, 111-122. · DOI · Paper page
  34. Shapiro, A.D., Riederer, M.A., and Pfeffer, S.R. (1993). Biochemical analysis of rab9, a ras-like GTPase involved in protein transport from late endosomes to the trans Golgi network.J. Biol. Chem.268, 6925-6931. · DOI
  35. Soldati, T., Rancano, C., Geissler, H., and Pfeffer, S.R. (1995). Rab7 and Rab9 are recruited onto late endosomes by biochemically distinguishable processes.J. Biol. Chem.270, 25541-25548. · DOI
  36. 10.1091/mbc.4.4.425 · DOI
  37. Sonnichsen, B., De Renzis, S., Nielsen, E., Rietdorf, J., and Zerial, M. (2000). Distinct membrane domains on endosomes in the recycling pathway visualized by multicolor imaging of Rab4, Rab5, and Rab11.J. Cell Biol.149, 901-914. · DOI · Paper page
  38. Stenmark, H., Parton, R.G., Steele-Mortimer, O., Lutcke, A., Gruenberg, J., and Zerial, M. (1994). Inhibition of rab5 GTPase activity stimulates membrane fusion in endocytosis.EMBO J.13, 1287-1296. · DOI · Paper page
  39. Vitelli, R., Santillo, M., Lattero, D., Chiariello, M., Bifulco, M., Bruni, C.B., and Bucci, C. (1997). Role of the small GTPase Rab7 in the late endocytic pathway.J. Biol. Chem.272, 4391-4397. · DOI
  40. Wucherpfennig, T., Wilsch-Brauninger, M., and Gonzalez-Gaitan, M. (2003). Role of Drosophila Rab5 during endosomal trafficking at the synapse and evoked neurotransmitter release.J. Cell Biol.161, 609-624. · DOI
  41. Zerial, M., and McBride, H. (2001). Rab proteins as membrane organizers.Nat Rev Mol. Cell. Biol.2, 107-117. · DOI · Paper page

Cited by

Sorted by citations

Metadata

Authors
Ganley, I. G., Carroll, K., Bittova, L., & Pfeffer, S.
Affiliations
Department of Biochemistry, Stanford University School of Medicine, Stanford, CA 94305-5307
Venue
Molecular Biology of the Cell
Published
2004-12
Volume
15
Issue
12
Pages
5420-5430
ISSN
  • 1059-1524
  • 1939-4586
Cited by
157
References
1
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review