RNAdvisor: a comprehensive benchmarking tool for the measure and prediction of RNA structural model quality

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Geometric deep learning of RNA structure

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Quantifying the Carbon Emissions of Machine Learning

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Coarse-grained modeling of large RNA molecules with knowledge-based potentials and structural filters

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FARFAR2: Improved De Novo Rosetta Prediction of Complex Global RNA Folds

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A Novel Side-Chain Orientation Dependent Potential Derived from Random-Walk Reference State for Protein Fold Selection and Structure Prediction

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New metrics for comparing and assessing discrepancies between RNA 3D structures and models.

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The role of nucleobase interactions in RNA structure and dynamics

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A nucleotide-level coarse-grained model of RNA

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3dRNA v2.0: An Updated Web Server for RNA 3D Structure Prediction

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RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction.

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CAD‐score: A new contact area difference‐based function for evaluation of protein structural models

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3dRNAscore: a distance and torsion angle dependent evaluation function of 3D RNA structures

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iFoldRNA v2: folding RNA with constraints

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On the significance of an RNA tertiary structure prediction

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Coarse-Grained HiRE-RNA Model for ab Initio RNA Folding beyond Simple Molecules, Including Noncanonical and Multiple Base Pairings

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RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks

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IsRNA1: De Novo Prediction and Blind Screening of RNA 3D Structures

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Effects of amino acid composition, finite size of proteins, and sparse statistics on distance‐dependent statistical pair potentials

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MCQ4Structures to compute similarity of molecule structures

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rsRNASP: A residue-separation-based statistical potential for RNA 3D structure evaluation

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RNAJP: enhanced RNA 3D structure predictions with non-canonical interactions and global topology sampling

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Modeling Noncanonical RNA Base Pairs by a Coarse-Grained IsRNA2 Model

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CELEBRATING 20 YEARS

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What is the best reference state for designing statistical atomic potentials in protein structure prediction?

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What is the best reference state for building statistical potentials in RNA 3D structure evaluation?

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rna-tools.online: a Swiss army knife for RNA 3D structure modeling workflow

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The structure assessment web server: for proteins, complexes and more

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Has <i>AlphaFold</i> 3 achieved success for RNA?

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State-of-the-RNArt: benchmarking current methods for RNA 3D structure prediction

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Advances in the field of RNA 3D structure prediction and modeling, with purely theoretical approaches, and with the use of experimental data

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RNA-TorsionBERT: leveraging language models for RNA 3D torsion angles prediction

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RNAtango: Analysing and comparing RNA 3D structures via torsional angles

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Limits of deep-learning-based RNA prediction methods

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Aptamers Meet Structural Bioinformatics, Computational Chemistry, and Artificial Intelligence

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RNAdvisor 2: A unified platform for RNA 3D model quality assessment using metrics, scoring functions, and meta-metrics

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HomRank: Homogeneous RNA Ranking for 3D Structure EvaluationPreprint

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Hierarchical breakdown of RNA structure prediction in CASP16: from reliable local helices to speculative multimer assembly

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RNADaemon: Reinforcement Learning-Guided Molecular Dynamics for RNA Tertiary Structure Prediction.

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Meta-Scoring Approach to Curate Synthetic RNA 3D Structures

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RNAdvisor 2: A unified platform for RNA 3D model quality assessment using metrics, scoring functions, and meta-metrics

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RNAssess—a web server for quality assessment of RNA 3D structures

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RNA 3D Structure Quality Assessment via Local Motif Modeling and Global Feature Aggregation

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Assessment of Structure Quality (RNA and Protein)

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Quality assessment of RNA 3D structure models using deep learning and intermediate 2D maps

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