The DOI matches its Crossref record; 15 of the 15 references it cites were found in a registry or an index.
IslandPath: aiding detection of genomic islands in prokaryotes
Open accessAbstract
Summary: Genomic islands (clusters of genes of potential horizontal origin in a prokaryotic genome) are frequently associated with a particular adaptation of a microbe that is of medical, agricultural or environmental importance, such as antibiotic resistance, pathogen virulence, or metal resistance. While many sequence features associated with such islands have been adopted separately in applications for analysis of genomic islands, including pathogenicity islands, there is no single application that integrates multiple features for island detection. IslandPath is a network service which incorporates multiple DNA signals and genome annotation features into a graphical display of a bacterial or archaeal genome, to aid the detection of genomic islands. Availability: This application is available at http://www.pathogenomics.sfu.ca/islandpath and the source code is freely available, under GNU public licence, from the authors. Contact: brinkman@sfu.ca Supplementary information: An online help file, which includes analyses of the utility of IslandPath, can be found at http://www.pathogenomics.sfu.ca/islandpath/current/islandhelp.html * To whom correspondence should be addressed.
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Cites
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Cited by
IslandViewer 4: expanded prediction of genomic islands for larger-scale datasets
Bertelli, C., Laird, M. R., Williams, K. P., Simon Fraser University Research Computing Group, Lau, B. Y., Hoad, G., Winsor, G. L., & Brinkman, F. S. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkx343 · Cited by 1,543
Self-citationVernikos, G. S., & Parkhill, J. (2006) · Bioinformatics · doi:10.1093/bioinformatics/btl369 · Cited by 494
Pathogenicity islands: a molecular toolbox for bacterial virulence
Gal-Mor, O., & Finlay, B. B. (2006) · Cellular Microbiology · doi:10.1111/j.1462-5822.2006.00794.x · Cited by 379
Detecting genomic islands using bioinformatics approaches
Langille, M. G. I., Hsiao, W. W. L., & Brinkman, F. S. L. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2350 · Cited by 279
Self-citationDhillon, B. K., Laird, M. R., Shay, J. A., Winsor, G. L., Lo, R., Nizam, F., Pereira, S. K., Waglechner, N., McArthur, A. G., Langille, M. G. I., et al. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv401 · Cited by 266
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Metadata
- Authors
- Hsiao, W., Wan, I., Jones, S. J., & Brinkman, F. S. L.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2003-02-12
- Volume
- 19
- Issue
- 3
- Pages
- 418-420
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2121621283
- Cited by
- 388
- References
- 15
- FWCI
- 3.00
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Hsiao, W., Wan, I., Jones, S. J., & Brinkman, F. S. L. (2003). IslandPath: aiding detection of genomic islands in prokaryotes. Bioinformatics. https://doi.org/10.1093/bioinformatics/btg004
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