Fast and accurate short read alignment with Burrows-Wheeler transform

Cited by (1,699)

Items 901–1,000 of 1,699

1. Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma
   Chaisaingmongkol, Jittiporn, Budhu, Anuradha, Dang, Hien, Rabibhadana, Siritida, Pupacdi, Benjarath, Kwon, So Mee, Forgues, Marshonna, Pomyen, Yotsawat, Bhudhisawasdi, Vajarabhongsa, Lertprasertsuke, Nirush et al. · 2017 · Cancer Cell
2. Transcriptome-wide distribution and function of RNA hydroxymethylcytosine
   Benjamin Delatte, Fei Wang, Long Vo Ngoc, Évelyne Collignon, Elise Bonvin, Rachel Deplus, Emilie Calonne, Bouchra Hassabi, Pascale Putmans, Stephan Awe et al. · 2016 · Science
3. Senescence-Induced Vascular Remodeling Creates Therapeutic Vulnerabilities in Pancreas Cancer
   Ruscetti, Marcus, Morris, John P., Mezzadra, Riccardo, Russell, James, Leibold, Josef, Romesser, Paul B., Simon, Janelle, Kulick, Amanda, Ho, Yu-jui, Fennell, Myles et al. · 2020 · Cell
4. Finding the sources of missing heritability in a yeast cross
   Joshua S. Bloom, Ian M. Ehrenreich, Wesley T. Loo, Thúy-Lan Võ Lite, Leonid Kruglyak · 2013 · Nature
5. Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing
   the ICGC MMML-Seq Project · 2012 · Nature Genetics
6. The population history of northeastern Siberia since the Pleistocene
   Martin Sikora, Владимир Викторович Питулько, Vítor C. Sousa, Morten E. Allentoft, Lasse Vinner, Simon Rasmussen, Ashot Margaryan, Peter de Barros Damgaard, Constanza de la Fuente Castro, Gabriel Renaud et al. · 2019 · Nature
7. Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen
   David E. L. Cooke, Liliana M. Cano, Sylvain Raffaele, R. A. Bain, LOUISE R. COOKE, Graham Etherington, Kenneth L. Deahl, Rhys A. Farrer, Eleanor M. Gilroy, Erica M. Goss et al. · 2012 · PLoS Pathogens
8. The histone lysine methyltransferase KMT2D sustains a gene expression program that represses B cell lymphoma development
   Ana Ortega-Molina, Isaac W. Boss, Andrés Canela, Heng Pan, Yanwen Jiang, Chunying Zhao, Man Jiang, Deqing Hu, Xabier Agirre, Itamar Niesvizky et al. · 2015 · Nature Medicine
9. Loss of VPS13C Function in Autosomal-Recessive Parkinsonism Causes Mitochondrial Dysfunction and Increases PINK1/Parkin-Dependent Mitophagy
   Suzanne Lesage, Valérie Drouet, Elisa Majounie, Vincent Deramecourt, Maxime Jacoupy, Aude Nicolas, Florence Cormier‐Dequaire, Sidi Mohamed Hassoun, Claire Pujol, Sorana Ciura et al. · 2016 · The American Journal of Human Genetics
10. An Integrated Pipeline for de Novo Assembly of Microbial Genomes
    Andrew Tritt, Jonathan A. Eisen, Marc T. Facciotti, Aaron E. Darling · 2012 · PLoS ONE
11. Germline Mutations in the BRIP1, BARD1, PALB2, and NBN Genes in Women With Ovarian Cancer
    Susan J. Ramus, Honglin Song, Ed Dicks, Jonathan P. Tyrer, Adam N. Rosenthal, Maria P. Intermaggio, Lindsay Sarah Macduff Fraser, Aleksandra Gentry‐Maharaj, Jane D. Hayward, Susan Philpott et al. · 2015 · JNCI Journal of the National Cancer Institute
12. RNA 5-Methylcytosine Facilitates the Maternal-to-Zygotic Transition by Preventing Maternal mRNA Decay
    Ying Yang, Lu Wang, Xiao Han, Wen-Lan Yang, Mengmeng Zhang, Haili Ma, Baofa Sun, Ang Li, Jun Xia, Jing Chen et al. · 2019 · Molecular Cell
13. Multiple emergences of genetically diverse amphibian-infecting chytrids include a globalized hypervirulent recombinant lineage
    Rhys A. Farrer, Lucy A. Weinert, Jon Bielby, Trenton W. J. Garner, François Balloux, Frances C. Clare, Jaime Bosch, Andrew A. Cunningham, Ché Weldon, Louis H. du Preez et al. · 2011 · Proceedings of the National Academy of Sciences
14. Ambit
    Vivek Seshadri, Donghyuk Lee, Thomas Mullins, Hasan Hassan, Amirali Boroumand, Jeremie S. Kim, Michael A. Kozuch, Onur Mutlu, Phillip B. Gibbons, Todd C. Mowry · 2017 · IEEE/ACM International Symposium on Microarchitecture (MICRO)
15. Characterization of antimicrobial-resistant Gram-negative bacteria that cause neonatal sepsis in seven low- and middle-income countries
    Kirsty M. Sands, Maria J. Carvalho, Edward A. R. Portal, Kathryn Thomson, Calie Dyer, Chinenye Akpulu, Robert Andrews, Ana Ferreira, David Gillespie, Thomas Hender et al. · 2021 · Nature Microbiology
16. Exome sequencing identifies GATA-2 mutation as the cause of dendritic cell, monocyte, B and NK lymphoid deficiency
    Rachel Emma Dickinson, Helen R Griffin, Venetia Bigley, Louise N. Reynard, Rafiqul Hussain, Muzlifah A. Haniffa, Jeremy H. Lakey, Thahira Rahman, Xiao-Nong Wang, Naomi N. McGovern et al. · 2011 · Blood
17. Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells
    Gifford, Casey A., Ziller, Michael J., Gu, Hongcang, Trapnell, Cole, Donaghey, Julie, Tsankov, Alexander, Shalek, Alex K., Kelley, David R., Shishkin, Alexander A., Issner, Robbyn et al. · 2013 · Cell
18. Epithelial NOTCH Signaling Rewires the Tumor Microenvironment of Colorectal Cancer to Drive Poor-Prognosis Subtypes and Metastasis
    René Jackstadt, Sander R. van Hooff, Joshua D.G. Leach, Xabier Cortés-Lavaud, Jeroen O. Lohuis, Rachel A. Ridgway, Valérie M Wouters, Jatin Roper, Timothy James Kendall, Campbell S.D. Roxburgh et al. · 2019 · Cancer Cell
19. An improved pig reference genome sequence to enable pig genetics and genomics research
    Amanda Warr, Nabeel Ahmed Affara, Bronwen L. Aken, Hamid Beiki, Derek M. Bickhart, Konstantinos Billis, William Chow, Lél Eöry, Heather A. Finlayson, Paul Flicek et al. · 2020 · GigaScience
20. Genomic insights into the peopling of the Southwest Pacific
    Skoglund, Pontus, Posth, Cosimo, Sirak, Kendra, Spriggs, Matthew, Valentin, Frederique, Bedford, Stuart, Clark, Geoffrey R., Reepmeyer, Christian, Petchey, Fiona, Fernandes, Daniel et al. · 2016 · Nature
21. Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue
    the ICGC Prostate Group, Colin S. Cooper, Rosalind A. Eeles, David C. Wedge, Peter Van Loo, Gunes Gundem, Ludmil B. Alexandrov, Bárbara Kremeyer, Adam P. Butler, Andy G. Lynch et al. · 2015 · Nature Genetics
22. Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax)
    Sangeet Lamichhaney, Guangyi Fan, Fredrik Widemo, Ulrika Gunnarsson, Doreen Schwochow, Marc P. Hoeppner, Susanne Kerje, Ulla Gustafson, Chengcheng Shi, He Zhang et al. · 2015 · Nature Genetics
23. The rubber tree genome reveals new insights into rubber production and species adaptation
    Chaorong Tang, Meng Yang, Yongjun Fang, Yingfeng Luo, Shenghan Gao, Xiaohu Xiao, Zewei An, Binhui Zhou, Bing Zhang, Xinyu Tan et al. · 2016 · Nature Plants
24. Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring
    Asaf Zviran, Rafael C. Schulman, M. Shah, S. T. Hill, Sunil Deochand, C. Khamnei, Dillon Maloney, K. Patel, W. Liao, Adam J. Widman et al. · 2020 · Nature Medicine
25. Tumor-infiltrating lymphocyte treatment for anti-PD-1-resistant metastatic lung cancer: a phase 1 trial
    Ben Creelan, Chao Wang, Jamie K. Teer, Eric M. Toloza, Jiqiang Yao, Sungjune Kim, Ana Marie Landin, John E. Mullinax, James Joseph Saller, Andreas Nicholas Saltos et al. · 2021 · Nature Medicine
26. CRISPR-Cas9 Based Engineering of Actinomycetal Genomes
    Yaojun Tong, Pep Charusanti, Lixin Zhang, Tilmann Weber, Sang Yup Lee · 2015 · ACS Synthetic Biology
27. A field guide to whole‐genome sequencing, assembly and annotation
    Robert Ekblom, Jochen B. W. Wolf · 2014 · Evolutionary Applications
28. An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge
    Catherine A. Brownstein, Alan H. Beggs, Nils Homer, Barry Merriman, Timothy W. Yu, Katherine C Flannery, Elizabeth T. DeChene, Meghan C. Towne, Sarah K Savage, Emily Price et al. · 2014 · Genome biology
29. LncRNA HOTAIR enhances ER signaling and confers tamoxifen resistance in breast cancer
    X Xue, Yeqing Angela Yang, Aihua Zhang, K-W Fong, Jung Kim, B Song, Shao Li, Jonathan C. Zhao, Jian Yu · 2015 · Oncogene
30. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality
    Thomas D. Wu, Jens Reeder, Michael F. Lawrence, Gabe Becker, Matthew J. Brauer · 2016 · Methods in molecular biology
31. The Peach v2.0 release: high-resolution linkage mapping and deep resequencing improve chromosome-scale assembly and contiguity
    Ignazio Verde, Jerry W. Jenkins, Luca Dondini, Sabrina Micali, Giulia Pagliarani, Elisa Vendramin, Roberta Paris, Valeria Aramini, Laura Gazza, Laura Rossini et al. · 2017 · BMC Genomics
32. Genome re-sequencing reveals the history of apple and supports a two-stage model for fruit enlargement
    Naibin Duan, Yang Bai, Honghe Sun, Nan Wang, Yumin Ma, Mingjun Li, Xin Wang, Chen Jiao, Noah Legall, Linyong Mao et al. · 2017 · Nature Communications
33. The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan
    Zhuo Wang, Juan Pascual‐Anaya, Amonida Zadissa, Wenqi Li, Yoshihito Niimura, Zhiyong Huang, Chunyi Li, Simon White, Zhiqiang Xiong, Dongming Fang et al. · 2013 · Nature Genetics
34. An overview of the Hadoop/MapReduce/HBase framework and its current applications in bioinformatics
    Ronald C. Taylor · 2010 · BMC Bioinformatics
35. Differences between germline and somatic mutation rates in humans and mice
    Brandon Milholland, Xiao Dong, Lei Zhang, Xiaoxiao Hao, Yousin Suh, Jan Vijg · 2017 · Nature Communications
36. Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development
    Chenfei Wang, Xiaoyu Liu, Yawei Gao, Lei Yang, Chong Li, Wenqiang Liu, Chuan Chen, Xiaochen Kou, Yanhong Zhao, Jiayu Chen et al. · 2018 · Nature Cell Biology
37. Erratum: Guidelines for diagnostic next-generation sequencing
    Gert Matthijs, Erika L. Souche, Marielle M. Alders, Anniek Corveleyn, Sebastian H. Eck, Ilse Feenstra, Valérie Race, Erik A. Sistermans, Marc Sturm, Marjan M. Weiss et al. · 2016 · European Journal of Human Genetics
38. Endogenous retroviruses function as species-specific enhancer elements in the placenta
    Chuong, Edward B, Rumi, M A Karim, Soares, Michael J, Baker, Julie C · 2013 · Nature Genetics
39. Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia
    Kim De Keersmaecker, Zeynep Kalender Atak, Ning Li, Carmen Vicente, Stephanie Patchett, Tiziana Girardi, Valentina Gianfelici, Ellen Geerdens, Emmanuelle Clappier, Michaël Porcu et al. · 2012 · Nature Genetics
40. M e D u S a : a multi-draft based scaffolder
    Emanuele Bosi, Beatrice Donati, Marco Galardini, Sara Brunetti, Marie‐France Sagot, Píetro Lió, Pierluigi Crescenzi, Renato Fani, Marco Fondi · 2015 · Bioinformatics
41. Discovery of antimicrobial peptides in the global microbiome with machine learning
    Célio Dias Santos Júnior, Marcelo D. T. Torres, Yiqian Duan, Álvaro Rodríguez del Río, Thomas Schmidt, Hui Chong, Anthony Fullam, Michael Kuhn, Chengkai Zhu, Amy Houseman et al. · 2024 · Cell
42. Genomic landscape of cutaneous T cell lymphoma
    Jaehyuk Choi, Gerald Goh, Trent J. Walradt, Bok Sil Hong, Christopher G. Bunick, Kan Chen, Robert D. Bjornson, Yaakov Maman, Tiffany L. Wang, Jesse Tordoff et al. · 2015 · Nature Genetics
43. A Y-chromosome–encoded small RNA acts as a sex determinant in persimmons
    Takashi Akagi, Isabelle Marie Henry, Ryutaro Tao, Luca Comai · 2014 · Science
44. The Reference Genome Sequence ofSaccharomyces cerevisiae: Then and Now
    Stacia R. Engel, Fred S. Dietrich, Dianna G. Fisk, Gail Binkley, Rama Balakrishnan, Maria C. Costanzo, Selina S. Dwight, Benjamin C. Hitz, Kalpana Karra, Robert S Nash et al. · 2014 · G3 Genes Genomes Genetics
45. Disease-associated gut microbiome and metabolome changes in patients with chronic obstructive pulmonary disease
    Kate L Bowerman, Saima Firdous Rehman, Annalicia Vaughan, Nancy Lachner, Kurtis F. Budden, Richard Kim, David Wood, Shaan L. Gellatly, Shakti Dhar Shukla, Lisa G. Wood et al. · 2020 · Nature Communications
46. Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT)
    Richard Michael Durbin · 2014 · Bioinformatics
47. SOAP3-dp: Fast, Accurate and Sensitive GPU-Based Short Read Aligner
    Ruibang Luo, Thomas K. F. Wong, Jian-Qiao Zhu, Chi-Man Liu, Xiaoqian Zhu, Edward Wu, Lap–Kei Lee, Haoxiang Lin, Wenjuan Zhu, David Wai-lok Cheung et al. · 2013 · PLoS ONE
48. Salmonella Serotype Determination Utilizing High-Throughput Genome Sequencing Data
    Shaokang Zhang, Yanlong Yin, Marcus B. Jones, Zhenzhen Zhang, Brooke L. Deatherage Kaiser, Blake A. Dinsmore, Collette Fitzgerald, Patricia I. Fields, Xiangyu Deng · 2015 · Journal of Clinical Microbiology
49. Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture
    Burkhard Steuernagel, Sambasivam K. Periyannan, Inmaculada Hernández‐Pinzón, Kamil Witek, Matthew N. Rouse, Guotai Yu, Asyraf Hatta, Mick Ayliffe, Harbans S. Bariana, Jonathan D. G. Jones et al. · 2016 · Nature Biotechnology
50. The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution
    Daniel Lang, Kristian K Ullrich, Florent Murat, Jörg Fuchs, Jerry W. Jenkins, Fabian B. Haas, Mathieu Piednoël, Heidrun Gundlach, Michiel Van Bel, Rabea Meyberg et al. · 2017 · The Plant Journal
51. The cis-regulatory dynamics of embryonic development at single-cell resolution
    Cusanovich, Darren A., Reddington, James P., Garfield, David A., Daza, Riza M., Aghamirzaie, Delasa, Marco-Ferreres, Raquel, Pliner, Hannah A., Christiansen, Lena, Qiu, Xiaojie, Steemers, Frank J. et al. · 2018 · Nature
52. De novo mutations in ATP1A3 cause alternating hemiplegia of childhood
    Erin L. Heinzen, Kathryn J. Swoboda, Yuki Hitomi, Fiorella Gurrieri, Sophie Nicole, Boukje de Vries, Francesco Danilo Tiziano, Bertrand Fontaine, Nicole M Walley, Sinéad B. Heavin et al. · 2012 · Nature Genetics
53. Reconstructing Prehistoric African Population Structure
    Pontus Skoglund, Jessica C. Thompson, Mary E. Prendergast, Alissa Mittnik, Kendra A. Sirak, Mateja Hajdinjak, Tasneem Salie, Nadin Rohland, Swapan Mallick, Alexander Peltzer et al. · 2017 · Cell
54. Stick Insect Genomes Reveal Natural Selection’s Role in Parallel Speciation
    Víctor Soria‐Carrasco, Zachariah Gompert, Aaron A. Comeault, Timothy E. Farkas, Thomas Lee Parchman, J. Spencer Johnston, C. Alex Buerkle, Jeffrey L. Feder, Jens Bast, Tanja Schwander et al. · 2014 · Science
55. Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
    J. Víctor Moreno-Mayar, Ben A. Potter, Lasse Vinner, Matthias Steinrücken, Simon Rasmussen, Jonathan Terhorst, Jack Kamm, Anders Albrechtsen, Anna‐Sapfo Malaspinas, Martin Sikora et al. · 2018 · Nature
56. Impairment of immunity to <i>Candida</i> and <i>Mycobacterium</i> in humans with bi-allelic <i>RORC</i> mutations
    Okada, Satoshi, Markle, Janet G., Deenick, Elissa K., Mele, Federico, Averbuch, Dina, Lagos, Macarena, Alzahrani, Mohammed, Al-Muhsen, Saleh, Halwani, Rabih, Ma, Cindy S. et al. · 2015 · Science
57. Functional variants in the <i>LRRK2</i> gene confer shared effects on risk for Crohn’s disease and Parkinson’s disease
    Hui, Ken Y., Fernandez-Hernandez, Heriberto, Hu, Jianzhong, Schaffner, Adam, Pankratz, Nathan, Hsu, Nai-Yun, Chuang, Ling-Shiang, Carmi, Shai, Villaverde, Nicole, Li, Xianting et al. · 2018 · Science Translational Medicine
58. Precise estimates of mutation rate and spectrum in yeast
    Yuan O. Zhu, Mark L. Siegal, David W. Hall, Dmitri A. Petrov · 2014 · Proceedings of the National Academy of Sciences
59. Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light
    Fei Gan, Shuyi Zhang, Nathan C. Rockwell, Shelley S. Martin, John Clark Lagarias, Donald A. Bryant · 2014 · Science
60. PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors
    Amit G. Deshwar, Shankar Vembu, Christina K. Yung, Gun Ho Jang, Lincoln David Stein, Quaid Morris · 2015 · Genome biology
61. Multiplexed shotgun genotyping for rapid and efficient genetic mapping
    Peter Andolfatto, Dan Davison, Deniz F. Erezyilmaz, Tina T. Hu, Joshua D. Mast, Tomoko Sunayama-Morita, David L. Stern · 2011 · Genome Research
62. Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity
    Jessen V. Bredeson, Jessica B. Lyons, Simon E. Prochnik, G Albert Wu, Cindy M. Ha, Eric Edsinger, Jane Grimwood, Jeremy Schmutz, Ismail Yusuf Rabbi, Chiedozie Ngozi Egesi et al. · 2016 · Nature Biotechnology
63. Whole-genome resequencing reveals Brassica napus origin and genetic loci involved in its improvement
    Kun Lu, Lijuan Wei, Xiaolong Li, Yuntong Wang, Jian Wu, Miao Liu, Chao Zhang, Zhiyou Chen, Zhongchun Xiao, Hongju Jian et al. · 2019 · Nature Communications
64. A common Greenlandic TBC1D4 variant confers muscle insulin resistance and type 2 diabetes
    Moltke, Ida, Grarup, Niels, Jørgensen, Marit E., Bjerregaard, Peter, Treebak, Jonas T., Fumagalli, Matteo, Korneliussen, Thorfinn S., Andersen, Marianne A., Nielsen, Thomas S., Krarup, Nikolaj T. et al. · 2014 · Nature
65. Upper Palaeolithic genomes reveal deep roots of modern Eurasians
    Jones, Eppie R., Gonzalez-Fortes, Gloria, Connell, Sarah, Siska, Veronika, Eriksson, Anders, Martiniano, Rui, McLaughlin, Russell L., Gallego Llorente, Marcos, Cassidy, Lara M., Gamba, Cristina et al. · 2015 · Nature Communications
66. Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation
    Christopher S. Smillie, Jenny S. Sauk, Dirk Gevers, Jonathan Friedman, Jaeyun Sung, Ilan Youngster, Elizabeth L. Hohmann, Christopher M. Staley, Alexander Khoruts, Michael Jay Sadowsky et al. · 2018 · Cell Host & Microbe
67. Genome Detective: an automated system for virus identification from high-throughput sequencing data
    Michael Vilsker, Yumna Moosa, Sam Nooij, Vagner Fonseca, Yoika Ghysens, Korneel Dumon, Raf Pauwels, Luiz Carlos Alcantara, Ewout Vanden Eynden, Anne‐Mieke Vandamme et al. · 2018 · Bioinformatics
68. Telomere-to-telomere assembly of diploid chromosomes with Verkko
    Mikko Rautiainen, Sergey Nurk, Brian P. Walenz, Glennis A. Logsdon, David Porubskỳ, Arang Rhie, Evan E. Eichler, Adam M. Phillippy, Sergey Koren · 2023 · Nature Biotechnology
69. Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk
    Brinkman, Arie B., Gu, Hongcang, Bartels, Stefanie J.J., Zhang, Yingying, Matarese, Filomena, Simmer, Femke, Marks, Hendrik, Bock, Christoph, Gnirke, Andreas, Meissner, Alexander et al. · 2012 · Genome Research
70. Modularly assembled designer TAL effector nucleases for targeted gene knockout and gene replacement in eukaryotes
    Ting Li, Sheng Huang, Xuefeng Zhao, David Alan Wright, Susan L. Carpenter, Martin H. Spalding, Donald P. Weeks, Bing Yang · 2011 · Nucleic Acids Research
71. Ancient DNA analysis
    Orlando, Ludovic, Allaby, Robin, Skoglund, Pontus, Der Sarkissian, Clio, Stockhammer, Philipp W., Ávila-Arcos, María C., Fu, Qiaomei, Krause, Johannes, Willerslev, Eske, Stone, Anne C. et al. · 2021 · Nature Reviews Methods Primers
72. Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian Development
    Nord, Alex S., Blow, Matthew J., Attanasio, Catia, Akiyama, Jennifer A., Holt, Amy, Hosseini, Roya, Phouanenavong, Sengthavy, Plajzer-Frick, Ingrid, Shoukry, Malak, Afzal, Veena et al. · 2013 · Cell
73. Exploring genetic variation in the tomato ( Solanum section Lycopersicon ) clade by whole‐genome sequencing
    Saulo Alves Aflitos, Elio G. W. M. Schijlen, Hans de Jong, Dick de Ridder, Sandra Smit, Richard Finkers, Jun Wang, Gengyun Zhang, Ning Li, Likai Mao et al. · 2014 · The Plant Journal
74. Rational Selection of Syngeneic Preclinical Tumor Models for Immunotherapeutic Drug Discovery
    Suzanne I.S. Mosely, John E. Prime, Richard C.A. Sainson, Jens‐Oliver Koopmann, Dennis Y.Q. Wang, Danielle M. Greenawalt, Miika J. Ahdesmaki, Rebecca Leyland, Stefanie Mullins, Luciano Pacelli et al. · 2016 · Cancer Immunology Research
75. The RNA m6A Reader YTHDF2 Maintains Oncogene Expression and Is a Targetable Dependency in Glioblastoma Stem Cells
    Deobrat Dixit, Briana C. Prager, Ryan C. Gimple, Hui Xian Poh, Yang Wang, Qiulian Wu, Zhixin Qiu, Reilly L. Kidwell, Leo J.Y. Kim, Qi Xie et al. · 2020 · Cancer Discovery
76. LY-CoV1404 (bebtelovimab) potently neutralizes SARS-CoV-2 variants
    Kathryn Westendorf, Stefanie Žentelis, Lingshu Wang, Denisa Foster, Peter Vaillancourt, Matthew Wiggin, Erica Lovett, Robin van der Lee, Jörg Hendle, Anna Pustilnik et al. · 2022 · Cell Reports
77. A pan-cancer mycobiome analysis reveals fungal involvement in gastrointestinal and lung tumors
    Anders B. Dohlman, Jared Klug, Marissa Mesko, Iris Hanxing Gao, Steven M. Lipkin, Xiling Shen, Iliyan Dimitrov Iliev · 2022 · Cell
78. Intragenic origins due to short G1 phases underlie oncogene-induced DNA replication stress
    Morgane Macheret, Thanos D. Halazonetis · 2018 · Nature
79. Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
    Liu, Shiping, Lorenzen, Eline D., Fumagalli, Matteo, Li, Bo, Harris, Kelley, Xiong, Zijun, Zhou, Long, Korneliussen, Thorfinn Sand, Somel, Mehmet, Babbitt, Courtney et al. · 2014 · Cell
80. The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
    Kentaro Yoshida, Verena J. Schuenemann, Liliana M. Cano, Marina Pais, Bagdevi Mishra, Rahul Sharma, Chirsta Lanz, Frank N. Martin, Sophien Kamoun, Johannes Krause et al. · 2013 · eLife
81. Bringing the Animal QTLdb and CorrDB into the future: meeting new challenges and providing updated services
    Zhi‐Liang Hu, Carissa A. Park, James Mark Reecy · 2021 · Nucleic Acids Research
82. The million mutation project: A new approach to genetics in Caenorhabditis elegans
    Owen A. Thompson, Mark L. Edgley, Pnina Strasbourger, Stéphane Flibotte, Brent Ewing, Ryan Adair, Vinci Au, Iasha Chaudhry, Lisa Fernando, Harald Hutter et al. · 2013 · Genome Research
83. Whole-genome and multisector exome sequencing of primary and post-treatment glioblastoma reveals patterns of tumor evolution
    Kim, Hoon, Zheng, Siyuan, Amini, Seyed S., Virk, Selene M., Mikkelsen, Tom, Brat, Daniel J., Grimsby, Jonna, Sougnez, Carrie, Muller, Florian, Hu, Jian et al. · 2015 · Genome Research
84. Genetic diversity of the African malaria vector Anopheles gambiae
    Alistair Miles, Chris S. Clarkson, Krzysztof Kozak, Richard D. Pearson, Martin J. Donnelly, Mara Lawniczak, Dominic P. Kwiatkowski, Jim Stalker, Eleanor Drury, Daniel G. Mead et al. · 2017 · Nature
85. Are pangolins the intermediate host of the 2019 novel coronavirus (SARS-CoV-2)?
    Ping Liu, Jing‐Zhe Jiang, Xiu‐Feng Wan, Yan Hua, Linmiao Li, Jiabin Zhou, Xiaohu Wang, Fanghui Hou, Jing Chen, Jiejian Zou et al. · 2020 · PLoS Pathogens
86. RNA-seq of 272 gliomas revealed a novel, recurrent PTPRZ1-MET fusion transcript in secondary glioblastomas
    Zhaoshi Bao, Hui-Min Chen, Ming-Yu Yang, Chuan‐Bao Zhang, Kai Yu, Wan-Lu Ye, Bo-Qiang Hu, Wei Yan, Wei Zhang, Johnny C. Akers et al. · 2014 · Genome Research
87. A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex
    Yao, Zizhen, Liu, Hanqing, Xie, Fangming, Fischer, Stephan, Adkins, Ricky S., Aldridge, Andrew I., Ament, Seth A., Bartlett, Anna, Behrens, M. Margarita, Van den Berge, Koen et al. · 2021 · Nature
88. Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare
    Chng, Kern Rei, Tay, Angeline Su Ling, Li, Chenhao, Ng, Amanda Hui Qi, Wang, Jingjing, Suri, Bani Kaur, Matta, Sri Anusha, McGovern, Naomi, Janela, Baptiste, Wong, Xuan Fei Colin C. et al. · 2016 · Nature Microbiology
89. The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies
    Aleksey V. Zimin, Steven L. Salzberg · 2020 · PLoS Computational Biology
90. Dindel: Accurate indel calls from short-read data
    Cornelis A. Albers, Gerton A. Lunter, Daniel G. MacArthur, Gil McVean, Willem Hendrik Ouwehand, Richard Michael Durbin · 2010 · Genome Research
91. Community characteristics of the gut microbiomes of competitive cyclists
    Petersen, Lauren M., Bautista, Eddy J., Nguyen, Hoan, Hanson, Blake M., Chen, Lei, Lek, Sai H., Sodergren, Erica, Weinstock, George M. · 2017 · Microbiome
92. A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
    D’Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher, Hall, Neil · 2016 · BMC Genomics
93. The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication
    Muhua Wang, Yeisoo Yu, Georg Haberer, Pradeep Reddy Marri, Chuanzhu Fan, José Luis Goicoechea, Andrea Zuccolo, Xiang Song, Dave Kudrna, Jetty S. S. Ammiraju et al. · 2014 · Nature Genetics
94. Rapid modelling of cooperating genetic events in cancer through somatic genome editing
    Francisco J. Sánchez Rivera, Thales Y. Papagiannakopoulos, Rodrigo Romero, Tuomas Tammela, Matthew R. Bauer, Arjun J. Bhutkar, Nikhil S. Joshi, Lakshmipriya Subbaraj, Roderick Terry Bronson, Wen Xue et al. · 2014 · Nature
95. N-Myc Drives Neuroendocrine Prostate Cancer Initiated from Human Prostate Epithelial Cells
    John K. Lee, John W. Phillips, Bryan A. Smith, Jung Wook Park, Tanya Ivanova Stoyanova, Erin McCaffrey, Robert Baertsch, Artem Sokolov, Justin Meyerowitz, Colleen Mathis et al. · 2016 · Cancer Cell
96. Aberrant FGFR signaling mediates resistance to CDK4/6 inhibitors in ER+ breast cancer
    Luigi Formisano, Yao Lu, Alberto Servetto, Ariella B. Hanker, Valerie Malyvanh Jansen, Joshua A. Bauer, Dhivya R. Sudhan, Ángel Guerrero Zotano, Sarah Croessmann, Yan Ping Guo et al. · 2019 · Nature Communications
97. DNA methylation contributes to natural human variation
    Heyn, Holger, Moran, Sebastian, Hernando-Herraez, Irene, Sayols, Sergi, Gomez, Antonio, Sandoval, Juan, Monk, Dave, Hata, Kenichiro, Marques-Bonet, Tomas, Wang, Liewei et al. · 2013 · Genome Research
98. The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing
    Paul M. Magwene, John H. Willis, John K. Kelly · 2011 · PLoS Computational Biology
99. Ancient mitochondrial DNA provides high-resolution time scale of the peopling of the Americas
    Bastien Llamas, Lars Fehren‐Schmitz, Guido Valverde, Julien Soubrier, Swapan Mallick, Nadin Rohland, Susanne Nordenfelt, Cristina E. Valdiosera, Stephen M. Richards, Adam B. Rohrlach et al. · 2016 · Science Advances
100. HER2 expression identifies dynamic functional states within circulating breast cancer cells
     Nicole Vincent Jordan, Aditya Bardia, Ben S. Wittner, Cyril H. Benes, Matteo Ligorio, Yu Zheng, Min Yu, Tilak Kumar Sundaresan, Joseph A. LiCausi, Rushil N. Desai et al. · 2016 · Nature