Fast and accurate short read alignment with Burrows-Wheeler transform

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22. Altered proliferation and networks in neural cells derived from idiopathic autistic individuals
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24. The Many Landscapes of Recombination in Drosophila melanogaster
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25. The sheep genome illuminates biology of the rumen and lipid metabolism
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26. MYC Drives Temporal Evolution of Small Cell Lung Cancer Subtypes by Reprogramming Neuroendocrine Fate
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28. Mapping DNA methylation with high-throughput nanopore sequencing
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29. DNMT1-interacting RNAs block gene-specific DNA methylation
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31. Multi-omics reveals that the rumen microbiome and its metabolome together with the host metabolome contribute to individualized dairy cow performance
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32. Accurate sex identification of ancient human remains using DNA shotgun sequencing
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33. Draft genome of the kiwifruit Actinidia chinensis
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34. Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
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35. Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing
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36. Comprehensive comparative analysis of RNA sequencing methods for degraded or low input samples
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37. SQ109 Targets MmpL3, a Membrane Transporter of Trehalose Monomycolate Involved in Mycolic Acid Donation to the Cell Wall Core of Mycobacterium tuberculosis
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38. Detecting ultralow-frequency mutations by Duplex Sequencing
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39. Patient-derived organoids from endometrial disease capture clinical heterogeneity and are amenable to drug screening
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40. Inherited and de novo genetic risk for autism impacts shared networks
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41. Transcriptional plasticity promotes primary and acquired resistance to BET inhibition
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42. Derivation of Pluripotent Stem Cells with In Vivo Embryonic and Extraembryonic Potency
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43. Genome-edited powdery mildew resistance in wheat without growth penalties
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44. Recurrent gain-of-function mutations of RHOA in diffuse-type gastric carcinoma
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45. Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations
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46. Fern genomes elucidate land plant evolution and cyanobacterial symbioses
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47. Glioma progression is shaped by genetic evolution and microenvironment interactions
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49. Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal
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50. Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.
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51. A late Middle Pleistocene Denisovan mandible from the Tibetan Plateau
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56. Deriving genotypes from RAD-seq short-read data using Stacks
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60. The mutational landscape of normal human endometrial epithelium
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62. Ultrafast clustering algorithms for metagenomic sequence analysis
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63. CREST maps somatic structural variation in cancer genomes with base-pair resolution
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64. Widespread contribution of transposable elements to the innovation of gene regulatory networks
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65. Chapter 12: Human Microbiome Analysis
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67. dDocent : a RADseq, variant-calling pipeline designed for population genomics of non-model organisms
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68. Natural selection interacts with recombination to shape the evolution of hybrid genomes
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80. Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA
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86. Organoid Models of Human Liver Cancers Derived from Tumor Needle Biopsies
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88. Molecular Profiling of the Residual Disease of Triple-Negative Breast Cancers after Neoadjuvant Chemotherapy Identifies Actionable Therapeutic Targets
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91. A route to de novo domestication of wild allotetraploid rice
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92. Evaluation and minimization of Cas9-independent off-target DNA editing by cytosine base editors
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93. Global genomic and transcriptomic analysis of human pancreatic islets reveals novel genes influencing glucose metabolism
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96. Passive and active DNA methylation and the interplay with genetic variation in gene regulation
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