The Sequence Alignment/Map format and SAMtools

Cited by (1,715)

Items 801–900 of 1,715

1. Impairment of immunity to <i>Candida</i> and <i>Mycobacterium</i> in humans with bi-allelic <i>RORC</i> mutations
   Okada, Satoshi, Markle, Janet G., Deenick, Elissa K., Mele, Federico, Averbuch, Dina, Lagos, Macarena, Alzahrani, Mohammed, Al-Muhsen, Saleh, Halwani, Rabih, Ma, Cindy S. et al. · 2015 · Science
2. Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems
   Shahar Alon, Daniel Goodwin, Anubhav Sinha, Asmamaw T. Wassie, Fei Chen, Evan R Daugharthy, Yosuke Bando, Atsushi Kajita, Andrew G. Xue, Karl Marrett et al. · 2021 · Science
3. HTSlib: C library for reading/writing high-throughput sequencing data
   2021
4. Peripherally derived macrophages can engraft the brain independent of irradiation and maintain an identity distinct from microglia
   Cronk, James C., Filiano, Anthony J., Louveau, Antoine, Marin, Ioana, Marsh, Rachel, Ji, Emily, Goldman, Dylan H., Smirnov, Igor, Geraci, Nicholas, Acton, Scott et al. · 2018 · Journal of Experimental Medicine
5. Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears
   Liu, Shiping, Lorenzen, Eline D., Fumagalli, Matteo, Li, Bo, Harris, Kelley, Xiong, Zijun, Zhou, Long, Korneliussen, Thorfinn Sand, Somel, Mehmet, Babbitt, Courtney et al. · 2014 · Cell
6. Stick Insect Genomes Reveal Natural Selection’s Role in Parallel Speciation
   Víctor Soria‐Carrasco, Zachariah Gompert, Aaron A. Comeault, Timothy E. Farkas, Thomas Lee Parchman, J. Spencer Johnston, C. Alex Buerkle, Jeffrey L. Feder, Jens Bast, Tanja Schwander et al. · 2014 · Science
7. Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing
   Casasent, Anna K., Schalck, Aislyn, Gao, Ruli, Sei, Emi, Long, Annalyssa, Pangburn, William, Casasent, Tod, Meric-Bernstam, Funda, Edgerton, Mary E., Navin, Nicholas E. · 2018 · Cell
8. Neutralizing Antibody and Soluble ACE2 Inhibition of a Replication-Competent VSV-SARS-CoV-2 and a Clinical Isolate of SARS-CoV-2
   Case, James Brett, Rothlauf, Paul W., Chen, Rita E., Liu, Zhuoming, Zhao, Haiyan, Kim, Arthur S., Bloyet, Louis-Marie, Zeng, Qiru, Tahan, Stephen, Droit, Lindsay et al. · 2020 · Cell Host &amp; Microbe
9. N-Myc Drives Neuroendocrine Prostate Cancer Initiated from Human Prostate Epithelial Cells
   John K. Lee, John W. Phillips, Bryan A. Smith, Jung Wook Park, Tanya Ivanova Stoyanova, Erin McCaffrey, Robert Baertsch, Artem Sokolov, Justin Meyerowitz, Colleen Mathis et al. · 2016 · Cancer Cell
10. Secondary Somatic Mutations Restoring RAD51C and RAD51D Associated with Acquired Resistance to the PARP Inhibitor Rucaparib in High-Grade Ovarian Carcinoma
    Olga Kondrashova, Minh Nguyen, Kristy Shield‐Artin, Anna V. Tinker, Nelson N.H. Teng, Maria I. Harrell, Michael J. Kuiper, Gwo‐Yaw Ho, Holly E. Barker, Maria Jasin et al. · 2017 · Cancer Discovery
11. Lep-MAP3: robust linkage mapping even for low-coverage whole genome sequencing data
    Pasi M. A. Rastas · 2017 · Bioinformatics
12. Reconstructing Prehistoric African Population Structure
    Pontus Skoglund, Jessica C. Thompson, Mary E. Prendergast, Alissa Mittnik, Kendra A. Sirak, Mateja Hajdinjak, Tasneem Salie, Nadin Rohland, Swapan Mallick, Alexander Peltzer et al. · 2017 · Cell
13. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing
    Xinpeng Qi, Man‐Wah Li, Min Xie, Xin Liu, Meng Ni, Guihua Shao, Chi Song, Aldrin Kay‐Yuen Yim, Ye Tao, Fuk‐Ling Wong et al. · 2014 · Nature Communications
14. Genome graphs and the evolution of genome inference
    Paten, Benedict, Novak, Adam M., Eizenga, Jordan M., Garrison, Erik · 2017 · Genome Research
15. The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine
    Kentaro Yoshida, Verena J. Schuenemann, Liliana M. Cano, Marina Pais, Bagdevi Mishra, Rahul Sharma, Chirsta Lanz, Frank N. Martin, Sophien Kamoun, Johannes Krause et al. · 2013 · eLife
16. De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera)
    Eman Al‐Dous, Binu George, Maryam E. Al‐Mahmoud, Moneera Y Al-Jaber, Hao Wang, Yasmeen Salameh, Eman K. Al‐Azwani, Srinivasa Rao Chaluvadi, Ana Clara Pontaroli, Jeremy D. DeBarry et al. · 2011 · Nature Biotechnology
17. Circular DNA elements of chromosomal origin are common in healthy human somatic tissue
    Henrik Devitt Møller, Marghoob Mohiyuddin, Iñigo Prada-Luengo, M. Reza Sailani, Jens Frey Halling, Peter Plomgaard, Lasse Maretty, Anders Johannes Hansen, Michael P. Snyder, Henriette Pilegaard et al. · 2018 · Nature Communications
18. Dindel: Accurate indel calls from short-read data
    Cornelis A. Albers, Gerton A. Lunter, Daniel G. MacArthur, Gil McVean, Willem Hendrik Ouwehand, Richard Michael Durbin · 2010 · Genome Research
19. Necroptosis microenvironment directs lineage commitment in liver cancer
    Seehawer, Marco, Heinzmann, Florian, D’Artista, Luana, Harbig, Jule, Roux, Pierre-François, Hoenicke, Lisa, Dang, Hien, Klotz, Sabrina, Robinson, Lucas, Doré, Grégory et al. · 2018 · Nature
20. Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity
    Matthew T. Sorbara, Eric R. Littmann, Emily Fontana, Thomas U. Moody, Claire E. Kohout, Mergim Gjonbalaj, Vincent P. Eaton, Ruth Seok, Ingrid M. Leiner, Eric G. Pamer · 2020 · Cell Host & Microbe
21. A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling
    D’Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher, Hall, Neil · 2016 · BMC Genomics
22. Identification of context-dependent expression quantitative trait loci in whole blood
    Zhernakova, Daria V, Deelen, Patrick, Vermaat, Martijn, van Iterson, Maarten, van Galen, Michiel, Arindrarto, Wibowo, van 't Hof, Peter, Mei, Hailiang, van Dijk, Freerk, Westra, Harm-Jan et al. · 2017 · Nature Genetics
23. Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication
    Carneiro, Miguel, Rubin, Carl-Johan, Di Palma, Federica, Albert, Frank W., Alföldi, Jessica, Barrio, Alvaro Martinez, Pielberg, Gerli, Rafati, Nima, Sayyab, Shumaila, Turner-Maier, Jason et al. · 2014 · Science
24. Rapid modelling of cooperating genetic events in cancer through somatic genome editing
    Francisco J. Sánchez Rivera, Thales Y. Papagiannakopoulos, Rodrigo Romero, Tuomas Tammela, Matthew R. Bauer, Arjun J. Bhutkar, Nikhil S. Joshi, Lakshmipriya Subbaraj, Roderick Terry Bronson, Wen Xue et al. · 2014 · Nature
25. Exome sequencing identifies recurrent mutations in NF1 and RASopathy genes in sun-exposed melanomas
    Michael O. Krauthammer, Yong Kong, Antonella Bacchiocchi, Perry Evans, Natapol Pornputtapong, Cen Wu, Jamie Patricia McCusker, Shuangge Ma, Elaine Cheng, Robert Straub et al. · 2015 · Nature Genetics
26. The Statistics of Bulk Segregant Analysis Using Next Generation Sequencing
    Paul M. Magwene, John H. Willis, John K. Kelly · 2011 · PLoS Computational Biology
27. Prions are a common mechanism for phenotypic inheritance in wild yeasts
    Randal Halfmann, Daniel F. Jarosz, Sandra K. Jones, Amelia Chang, Alex K. Lancaster, Susan Lee Lindquist · 2012 · Nature
28. Epitranscriptomic m6A Regulation of Axon Regeneration in the Adult Mammalian Nervous System
    Yi‐Lan Weng, Xu Wang, Ran An, Jessica Cassin, Caroline B. Vissers, Yuanyuan Liu, Yajing Liu, Tianlei Xu, Xinyuan Wang, Samuel Zheng Hao Wong et al. · 2018 · Neuron
29. Genomic epidemiology reveals multiple introductions of Zika virus into the United States
    Grubaugh, Nathan D., Ladner, Jason T., Kraemer, Moritz U. G., Dudas, Gytis, Tan, Amanda L., Gangavarapu, Karthik, Wiley, Michael R., White, Stephen, Thézé, Julien, Magnani, Diogo M. et al. · 2017 · Nature
30. Accurate and complete genomes from metagenomes
    Chen, Lin-Xing, Anantharaman, Karthik, Shaiber, Alon, Eren, A. Murat, Banfield, Jillian F. · 2020 · Genome Research
31. Clinical and virologic characteristics of the first 12 patients with coronavirus disease 2019 (COVID-19) in the United States
    The COVID-19 Investigation Team · 2020 · Nature Medicine
32. REAPR: a universal tool for genome assembly evaluation
    Martin Hunt, Taisei Kikuchi, Mandy J Sanders, Chris Newbold, Matthew Berriman, Thomas D. Otto · 2013 · Genome biology
33. Microsatellite Instability Detection by Next Generation Sequencing
    Stephen J. Salipante, Sheena M. Scroggins, Heather L. Hampel, Emily H. Turner, Colin C. Pritchard · 2014 · Clinical Chemistry
34. Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
    Ding, Li, Bailey, Matthew H., Porta-Pardo, Eduard, Thorsson, Vesteinn, Colaprico, Antonio, Bertrand, Denis, Gibbs, David L., Weerasinghe, Amila, Huang, Kuan-lin, Tokheim, Collin et al. · 2018 · Cell
35. Density of immunogenic antigens does not explain the presence or absence of the T-cell–inflamed tumor microenvironment in melanoma
    Stefani Spranger, Jason J. Luke, Riyue Bao, Yuanyuan Zha, Kyle M. Hernandez, Li Yan, Alexander P. Gajewski, Jorge Andrade, Thomas F. Gajewski · 2016 · Proceedings of the National Academy of Sciences
36. Batf3 maintains autoactivation of Irf8 for commitment of a CD8α+ conventional DC clonogenic progenitor
    Gary E. Grajales‐Reyes, Arifumi Iwata, Jörn C. Albring, Xiaodi Wu, Roxane Tussiwand, Wumesh KC, Nicole M. Kretzer, Carlos G. Briseño, Vivek Durai, Prachi Bagadia et al. · 2015 · Nature Immunology
37. Drift-barrier hypothesis and mutation-rate evolution
    Way Sung, Matthew S. Ackerman, Samuel F. Miller, Thomas G. Doak, Michael Lynch · 2012 · Proceedings of the National Academy of Sciences
38. Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser
    Brian J. Raney, Timothy R. Dreszer, Galt P. Barber, H. Clawson, Pauline A. Fujita, Ting Wang, N. Nguyen, B. Paten, A. Zweig, D. Karolchik et al. · 2013 · Bioinform.
39. Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
    Reto Burri, Alexander Nater, Takeshi Kawakami, Carina F. Mugal, Pall I. Olason, Linnéa Smeds, Alexander Suh, Ludovic Dutoit, Stanislav Bureš, László Zsolt Garamszegi et al. · 2015 · Genome Research
40. Overcoming mutation-based resistance to antiandrogens with rational drug design
    Balbas, Minna D, Evans, Michael J, Hosfield, David J, Wongvipat, John, Arora, Vivek K, Watson, Philip A, Chen, Yu, Greene, Geoffrey L, Shen, Yang, Sawyers, Charles L · 2013 · eLife
41. RNA-Seq workflow: gene-level exploratory analysis and differential expression
    Michael I. Love, Simon Anders, Vladislav Kim, Wolfgang K. Huber · 2015 · F1000Research
42. Telomere-to-telomere assembly of diploid chromosomes with Verkko
    Mikko Rautiainen, Sergey Nurk, Brian P. Walenz, Glennis A. Logsdon, David Porubskỳ, Arang Rhie, Evan E. Eichler, Adam M. Phillippy, Sergey Koren · 2023 · Nature Biotechnology
43. Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation
    Preissl, Sebastian, Fang, Rongxin, Huang, Hui, Zhao, Yuan, Raviram, Ramya, Gorkin, David U., Zhang, Yanxiao, Sos, Brandon C., Afzal, Veena, Dickel, Diane E. et al. · 2018 · Nature Neuroscience
44. Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
    Chinyere K. Okoro, Robert A. Kingsley, Thomas R. Connor, Simon R. Harris, Christopher Martin Parry, Manar Najim Al‐Mashhadani, Samuel Kariuki, Chisomo Lawrence Msefula, Melita A. Gordon, Elizabeth de Pinna et al. · 2012 · Nature Genetics
45. Recurrent SETBP1 mutations in atypical chronic myeloid leukemia
    Rocco Piazza, Simona Valletta, Nils Winkelmann, Sara Redaelli, Roberta Spinelli, Alessandra Pirola, Laura Antolini, Luca Mologni, Carla Donadoni, Elli Papaemmanuil et al. · 2012 · Nature Genetics
46. Whole‐genome sequencing approaches for conservation biology: Advantages, limitations and practical recommendations
    Angela P. Fuentes‐Pardo, Daniel E. Ruzzante · 2017 · Molecular Ecology
47. Extensive intraspecific gene order and gene structural variations between Mo17 and other maize genomes
    Silong Sun, Yingsi Zhou, Jian Chen, Junpeng Shi, Haiming Zhao, Hainan Zhao, Weibin Song, Mei Zhang, Yang Cui, Xiaomei Dong et al. · 2018 · Nature Genetics
48. Genomic basis for RNA alterations in cancer
    PCAWG Transcriptome Core Group, Claudia Calabrese, Natalie R. Davidson, Deniz Demircioğlu, Nuno A. Fonseca, Yao He, André Kahles, Kjong-Van Lehmann, Fenglin Liu, Yuichi Shiraishi et al. · 2020 · Nature
49. An NK-like CAR T cell transition in CAR T cell dysfunction
    Charly Ryan Good, Maria Angela Aznar, Shunichiro Kuramitsu, Parisa Samareh, Sangya Agarwal, Greg Donahue, Kenichi Ishiyama, Nils Wellhausen, Austin K. Rennels, Yujie Ma et al. · 2021 · Cell
50. Restriction site‐associated DNA sequencing, genotyping error estimation and de novo assembly optimization for population genetic inference
    Alicia Mastretta‐Yanes, Nils Arrigo, Nadir Álvarez, Tove Hedegaard Jorgensen, Daniel Piñero, Brent C. Emerson · 2014 · Molecular Ecology Resources
51. Early life stress confers lifelong stress susceptibility in mice via ventral tegmental area OTX2
    Peña, Catherine J., Kronman, Hope G., Walker, Deena M., Cates, Hannah M., Bagot, Rosemary C., Purushothaman, Immanuel, Issler, Orna, Loh, Yong-Hwee Eddie, Leong, Tin, Kiraly, Drew D. et al. · 2017 · Science
52. ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions
    Dolzhenko, Egor, Deshpande, Viraj, Schlesinger, Felix, Krusche, Peter, Petrovski, Roman, Chen, Sai, Emig-Agius, Dorothea, Gross, Andrew, Narzisi, Giuseppe, Bowman, Brett et al. · 2019 · Bioinformatics
53. Unraveling CRISPR-Cas9 genome engineering parameters via a library-on-library approach
    Raj Chari, Prashant Mali, Mark Moosburner, George McDonald Church · 2015 · Nature Methods
54. Zika virus evolution and spread in the Americas
    Hayden C. Metsky, Christian B. Matranga, Shirlee Wohl, Stephen F. Schaffner, Catherine A. Freije, Sarah M. Winnicki, Kendra L. West, James Qu, Mary Lynn Baniecki, Adrianne D. Gladden et al. · 2017 · Nature
55. Stem Cell Pluripotency Genes Klf4 and Oct4 Regulate Complex SMC Phenotypic Changes Critical in Late-Stage Atherosclerotic Lesion Pathogenesis
    Gabriel F. Alencar, Katherine M. Owsiany, Santosh Karnewar, Katyayani Sukhavasi, Giuseppe Mocci, Anh Tram Nguyen, Corey M. Williams, Sohel Shamsuzzaman, Michal Mokrý, Christopher A. Henderson et al. · 2020 · Circulation
56. Lymph node colonization induces tumor-immune tolerance to promote distant metastasis
    Nathan Edward Reticker-Flynn, Weiruo Zhang, Julia A. Belk, Pamela Antonia Basto, Nichole K. Escalante, Genay O.W. Pilarowski, Alborz Bejnood, Maria M. Martins, Justin A. Kenkel, Ian L. Linde et al. · 2022 · Cell
57. Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks
    Michelini, Flavia, Pitchiaya, Sethuramasundaram, Vitelli, Valerio, Sharma, Sheetal, Gioia, Ubaldo, Pessina, Fabio, Cabrini, Matteo, Wang, Yejun, Capozzo, Ilaria, Iannelli, Fabio et al. · 2017 · Nature Cell Biology
58. Long-read sequence assembly: a technical evaluation in barley
    Martin Mascher, Thomas Wicker, Jerry W. Jenkins, Christopher Plott, Thomas M. Lux, ChuShin Koh, Jennifer Ens, Heidrun Gundlach, Lori Beth Boston, Zuzana Tulpová et al. · 2021 · The Plant Cell
59. POT1 loss-of-function variants predispose to familial melanoma
    Robles-Espinoza, Carla Daniela, Harland, Mark, Ramsay, Andrew J, Aoude, Lauren G, Quesada, Víctor, Ding, Zhihao, Pooley, Karen A, Pritchard, Antonia L, Tiffen, Jessamy C, Petljak, Mia et al. · 2014 · Nature Genetics
60. Reconstructing the Deep Population History of Central and South America
    Cosimo Posth, Nathan J. Nakatsuka, Iosif Lazaridis, Pontus Skoglund, Swapan Mallick, Thiseas C. Lamnidis, Nadin Rohland, Kathrin Nägele, Nicole Adamski, Emilie Bertolini et al. · 2018 · Cell
61. Extracellular electron transfer-dependent anaerobic oxidation of ammonium by anammox bacteria
    Dario Rangel Shaw, Muhammad Ali, Krishna P. Katuri, Jeffrey A. Gralnick, Joachim Reimann, Rob Mesman, Laura van Niftrik, Mike S. M. Jetten, Pascal Elias Saikaly · 2020 · Nature Communications
62. The evolution of a tropical biodiversity hotspot
    Michael G. Harvey, Gustavo A. Bravo, Santiago Claramunt, Andrés M. Cuervo, Graham E. Derryberry, Jaqueline Battilana, Glenn Fairbanks Seeholzer, Jessica McKay, Brian C. O’Meara, Brant C. Faircloth et al. · 2020 · Science
63. Different Neuronal Activity Patterns Induce Different Gene Expression Programs
    Tyssowski, Kelsey M., DeStefino, Nicholas R., Cho, Jin-Hyung, Dunn, Carissa J., Poston, Robert G., Carty, Crista E., Jones, Richard D., Chang, Sarah M., Romeo, Palmyra, Wurzelmann, Mary K. et al. · 2018 · Neuron
64. Resurrection of endogenous retroviruses during aging reinforces senescence
    Liu, Xiaoqian, Liu, Zunpeng, Wu, Zeming, Ren, Jie, Fan, Yanling, Sun, Liang, Cao, Gang, Niu, Yuyu, Zhang, Baohu, Ji, Qianzhao et al. · 2023 · Cell
65. Brain feminization requires active repression of masculinization via DNA methylation
    Bridget M. Nugent, Christopher L. Wright, Amol Carl Shetty, Georgia E. Hodes, Kathryn M. Lenz, Anup Mahurkar, Scott J. Russo, Scott E. Devine, Margaret M. McCarthy · 2015 · Nature Neuroscience
66. Genetic fine mapping and genomic annotation defines causal mechanisms at type 2 diabetes susceptibility loci
    Kyle J. Gaulton, Teresa Cruz Ferreira, Yeji Lee, Anne Raimondo, Reedik Mägi, Michael E. Reschen, Anubha Mahajan, Adam E. Locke, Nigel William Rayner, Neil Robertson et al. · 2015 · Nature Genetics
67. Fate mapping of human glioblastoma reveals an invariant stem cell hierarchy
    Xiaoyang Lan, David J. Jörg, Florence M.G. Cavalli, Laura M. Richards, Long V. Nguyen, Robert J. Vanner, Paul Guilhamon, Lilian Lee, Michelle M. Kushida, Davide Pellacani et al. · 2017 · Nature
68. Distinct contributions of partial and full EMT to breast cancer malignancy
    Fabiana Lüönd, Nami Sugiyama, Ruben Bill, Laura Bornes, Carolina Hager, Fengyuan Tang, Natascha Santacroce, Christian Beisel, Robert Ivánek, Thomas R. Bürglin et al. · 2021 · Developmental Cell
69. Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins
    Teytelman, Leonid, Thurtle, Deborah M., Rine, Jasper, van Oudenaarden, Alexander · 2013 · Proceedings of the National Academy of Sciences
70. Mutational and structural analysis of diffuse large B-cell lymphoma using whole-genome sequencing
    Ryan D. Morin, Karen Mungall, Erin Pleasance, Andrew J. J. Mungall, Rodrigo Goya, Ryan D. Huff, David W. Scott, Jiarui Ding, Andrew J. L. Roth, Readman Chiu et al. · 2013 · Blood
71. Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair
    Corina Ohle, Rafael A. Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer · 2016 · Cell
72. High-Dimensional Single-Cell Cartography Reveals Novel Skeletal Muscle-Resident Cell Populations
    Lorenzo Giordani, Gary J. He, Elisa Négroni, Hiroshi Sakai, Justin Y. C. Law, M. Mona Siu, Raymond Wan, Aurélien Corneau, Shahragim Tajbakhsh, Tom H. Cheung et al. · 2019 · Molecular Cell
73. Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells
    Simon J. Elsässer, Kyung‐Min Noh, Nichole S. Diaz, C. David Allis, Laura A. Banaszynski · 2015 · Nature
74. Osteoblasts remotely supply lung tumors with cancer-promoting SiglecF high neutrophils
    Camilla Engblom, Christina Pfirschke, Rapolas Žilionis, Janaina Da Silva Martins, Stijn A. Bos, Gabriel Courties, Steffen Rickelt, Nicolas Sévère, Ninib Baryawno, Julien Faget et al. · 2017 · Science
75. Stepwise selection on homeologous PRR genes controlling flowering and maturity during soybean domestication
    Sijia Lu, Lidong Dong, Chao Fang, Shulin Liu, Lingping Kong, Qun Cheng, Liyu Chen, Tong Su, Haiyang Nan, Dan Zhang et al. · 2020 · Nature Genetics
76. The million mutation project: A new approach to genetics in Caenorhabditis elegans
    Owen A. Thompson, Mark L. Edgley, Pnina Strasbourger, Stéphane Flibotte, Brent Ewing, Ryan Adair, Vinci Au, Iasha Chaudhry, Lisa Fernando, Harald Hutter et al. · 2013 · Genome Research
77. Efficient storage of high throughput DNA sequencing data using reference-based compression
    Markus Hsi-Yang Fritz, Rasko Leinonen, Guy Cochrane, Ewan Birney · 2011 · Genome Research
78. The Integrated Genomic Landscape of Thymic Epithelial Tumors
    Milan Radovich, Curtis R. Pickering, Ina Felau, Gavin Ha, Hailei Zhang, Heejoon Jo, Katherine A. Hoadley, Pavana Anur, Jiexin Zhang, Michael D. McLellan et al. · 2018 · Cancer Cell
79. Blood contains circulating cell‐free respiratory competent mitochondria
    Zahra Al Amir Dache, Amaëlle Otandault, Rita Tanos, Brice Pastor, Romain Meddeb, Cynthia Sánchez, Giuseppe Arena, Laurence Lasorsa, Andrew Bennett, Thierry Grange et al. · 2020 · The FASEB Journal
80. Best practices for variant calling in clinical sequencing
    Daniel C. Koboldt · 2020 · Genome Medicine
81. C2H2 zinc finger proteins greatly expand the human regulatory lexicon
    Najafabadi, Hamed S, Mnaimneh, Sanie, Schmitges, Frank W, Garton, Michael, Lam, Kathy N, Yang, Ally, Albu, Mihai, Weirauch, Matthew T, Radovani, Ernest, Kim, Philip M et al. · 2015 · Nature Biotechnology
82. The evolution and pathogenic mechanisms of the rice sheath blight pathogen
    Aiping Zheng, Runmao Lin, Danhua Zhang, Peigang Qin, Lizhi Xu, Peng Ai, Lei Ding, Yanran Wang, Yao Chen, Yao Liu et al. · 2013 · Nature Communications
83. College of American Pathologists' Laboratory Standards for Next-Generation Sequencing Clinical Tests
    Nazneen Aziz, Qin Zhao, Lynn Bry, Denise K. Driscoll, Birgit Funke, Jane S. Gibson, Wayne W. Grody, Madhuri Hegde, Gerald A. Hoeltge, Debra G. B. Leonard et al. · 2014 · Archives of Pathology & Laboratory Medicine
84. Hypoxia induces rapid changes to histone methylation and reprograms chromatin
    Batie, Michael, Frost, Julianty, Frost, Mark, Wilson, James W., Schofield, Pieta, Rocha, Sonia · 2019 · Science
85. Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges
    Lovci, Michael T, Ghanem, Dana, Marr, Henry, Arnold, Justin, Gee, Sherry, Parra, Marilyn, Liang, Tiffany Y, Stark, Thomas J, Gehman, Lauren T, Hoon, Shawn et al. · 2013 · Nature Structural &amp; Molecular Biology
86. Transposon-associated TnpB is a programmable RNA-guided DNA endonuclease
    Karvelis, Tautvydas, Druteika, Gytis, Bigelyte, Greta, Budre, Karolina, Zedaveinyte, Rimante, Silanskas, Arunas, Kazlauskas, Darius, Venclovas, Česlovas, Siksnys, Virginijus · 2021 · Nature
87. Regulation of Co-transcriptional Pre-mRNA Splicing by m6A through the Low-Complexity Protein hnRNPG
    Katherine Ismei Zhou, Hailing Shi, Ruitu Lyu, Adam C. Wylder, Żaneta Matuszek, Jessica N. Pan, Chuan He, Marc Parisien, Tao Pan · 2019 · Molecular Cell
88. Recurrent mutations in multiple components of the cohesin complex in myeloid neoplasms
    Ayana Kon, Lee‐Yung Shih, Masashi Minamino, Masashi Sanada, Yuichi Shiraishi, Yasunobu Nagata, Kenichi Yoshida, Yusuke Okuno, Masashige Bando, Ryuichiro Nakato et al. · 2013 · Nature Genetics
89. Accurate identification of human Alu and non-Alu RNA editing sites
    Gokul Ramaswami, Wei Lin, Robert Piskol, Meng How Tan, Carrie Davis, Jin Billy Li · 2012 · Nature Methods
90. The transcription factor BATF operates as an essential differentiation checkpoint in early effector CD8+ T cells
    Makoto Kurachi, R. Anthony Barnitz, Nir Yosef, Pamela M. Odorizzi, Michael A. DiIorio, Madeleine E. Lemieux, Kathleen B. Yates, Jernej Godec, Martin G. Klatt, Aviv Regev et al. · 2014 · Nature Immunology
91. RNA promotes the formation of spatial compartments in the nucleus
    Sofia A. Quinodoz, Joanna W. Jachowicz, Prashant Bhat, Noah Ollikainen, Abhik K. Banerjee, Isabel Nadine Goronzy, Mario R. Blanco, Peter Chovanec, Amy Y. Chow, Yolanda Markaki et al. · 2021 · Cell
92. Clinical and analytical validation of FoundationOne®CDx, a comprehensive genomic profiling assay for solid tumors
    Coren A. Milbury, James Creeden, Wai‐Ki Yip, David L. Smith, Varun P. Pattani, Kristi Maxwell, Bethany Sawchyn, Ole V. Gjoerup, Wei Meng, Joel Skoletsky et al. · 2022 · PLoS ONE
93. DNA methylation changes in plasticity genes accompany the formation and maintenance of memory
    Halder, Rashi, Hennion, Magali, Vidal, Ramon O, Shomroni, Orr, Rahman, Raza-Ur, Rajput, Ashish, Centeno, Tonatiuh Pena, van Bebber, Frauke, Capece, Vincenzo, Vizcaino, Julio C Garcia et al. · 2016 · Nature Neuroscience
94. Genome Organization Drives Chromosome Fragility
    Canela, Andres, Maman, Yaakov, Jung, Seolkyoung, Wong, Nancy, Callen, Elsa, Day, Amanda, Kieffer-Kwon, Kyong-Rim, Pekowska, Aleksandra, Zhang, Hongliang, Rao, Suhas S.P. et al. · 2017 · Cell
95. Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity
    Erik C. Andersen, Justin Gerke, Joshua A. Shapiro, Jonathan R. Crissman, Rajarshi Ghosh, Joshua S. Bloom, Marie‐Anne Félix, Leonid Kruglyak · 2012 · Nature Genetics
96. A Drosophila Genetic Resource of Mutants to Study Mechanisms Underlying Human Genetic Diseases
    Shinya Yamamoto, Manish Jaiswal, Wu‐Lin Charng, Tomasz Gambin, Ender Karaca, Ghayda Mirzaa, Wojciech K. Wiszniewski, Héctor Sandoval, Nele A.T Haelterman, Bo Xiong et al. · 2014 · Cell
97. Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea
    Feng Cheng, Rifei Sun, Xilin Hou, Hongkun Zheng, Fenglan Zhang, Yangyong Zhang, Bo Liu, Jianli Liang, Mu Zhuang, Yunxia Liu et al. · 2016 · Nature Genetics
98. Construction of the third-generation Zea mays haplotype map
    Robert Bukowski, Xiaosen Guo, Yanli Lu, Cheng Zou, Bing He, Zhengqin Rong, Bo Wang, Dawen Xu, Bicheng Yang, Chuanxiao Xie et al. · 2017 · GigaScience
99. Widespread long-range cis-regulatory elements in the maize genome
    William A. Ricci, Zefu Lu, Lexiang Ji, Alexandre P. Marand, Christina L. Ethridge, Nathalie G. Murphy, Jaclyn M Noshay, Mary Galli, Maria Katherine Mejía‐Guerra, Maria Colomé‐Tatché et al. · 2019 · Nature Plants
100. Batch effects and the effective design of single-cell gene expression studies
     Tung, Po-Yuan, Blischak, John D., Hsiao, Chiaowen Joyce, Knowles, David A., Burnett, Jonathan E., Pritchard, Jonathan K., Gilad, Yoav · 2017 · Scientific Reports