Necroptosis microenvironment directs lineage commitment in liver cancer
Open accessAbstract
Primary liver cancer represents a major health problem. It comprises hepatocellular carcinoma (HCC) and intrahepatic cholangiocarcinoma (ICC), which differ markedly with regards to their morphology, metastatic potential and responses to therapy. However, the regulatory molecules and tissue context that commit transformed hepatic cells towards HCC or ICC are largely unknown. Here we show that the hepatic microenvironment epigenetically shapes lineage commitment in mosaic mouse models of liver tumorigenesis. Whereas a necroptosis-associated hepatic cytokine microenvironment determines ICC outgrowth from oncogenically transformed hepatocytes, hepatocytes containing identical oncogenic drivers give rise to HCC if they are surrounded by apoptotic hepatocytes. Epigenome and transcriptome profiling of mouse HCC and ICC singled out Tbx3 and Prdm5 as major microenvironment-dependent and epigenetically regulated lineage-commitment factors, a function that is conserved in humans. Together, our results provide insight into lineage commitment in liver tumorigenesis, and explain molecularly why common liver-damaging risk factors can lead to either HCC or ICC.
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Hepatocytes can give rise to both HCC and CCA.
“Indeed, hepatocytes can give rise to both HCC and CCA18, and our data suggest that PROX1 regulates this decision.”
From Active repression of cell fate plasticity by PROX1 safeguards hepatocyte identity and prevents liver tumorigenesis (2025) · cites this paper as [18]
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Trimmomatic: a flexible trimmer for Illumina sequence data
Bolger, A. M., Lohse, M., & Usadel, B. (2014) · Bioinformatics · doi:10.1093/bioinformatics/btu170 · Cited by 65,548 · see citing works
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041 · see citing works
Fast gapped-read alignment with Bowtie 2
Langmead, B., & Salzberg, S. L. (2012) · Nature Methods · doi:10.1038/nmeth.1923 · Cited by 56,400 · see citing works
Robinson, M. D., McCarthy, D. J., & Smyth, G. K. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btp616 · Cited by 41,364 · see citing works
limma powers differential expression analyses for RNA-sequencing and microarray studies
Ritchie, M. E., Phipson, B., Wu, D., Hu, Y., Law, C. W., Shi, W., & Smyth, G. K. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv007 · Cited by 40,458 · see citing works
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Langmead, B., Trapnell, C., Pop, M., & Salzberg, S. L. (2009) · Genome Biology · doi:10.1186/gb-2009-10-3-r25 · Cited by 21,849 · see citing works
A framework for variation discovery and genotyping using next-generation DNA sequencing data
DePristo, M. A., Banks, E., Poplin, R. E., Garimella, K. V., Maguire, J., Hartl, C., Philippakis, A., del Angel, G., Rivas, M. A., Hanna, M., et al. (2011) · Nature Genetics · doi:10.1038/ng.806 · Cited by 11,216 · see citing works
Buenrostro, J. D., Giresi, P. G., Zaba, L. C., Chang, H. Y., & Greenleaf, W. J. (2013) · Nature Methods · doi:10.1038/nmeth.2688 · Cited by 6,422 · see citing works
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
Durinck, S., Spellman, P. T., Birney, E., & Huber, W. K. (2009) · Nature Protocols · doi:10.1038/nprot.2009.97 · Cited by 4,081 · see citing works
deepTools: a flexible platform for exploring deep-sequencing data
Ramírez, F., Dündar, F., Diehl, S., Grüning, B. A., & Manke, T. (2014) · Nucleic Acids Research · doi:10.1093/nar/gku365 · Cited by 3,738 · see citing works
Differential oestrogen receptor binding is associated with clinical outcome in breast cancer
Ross-Innes, C. S., Stark, R., Teschendorff, A. E., Holmes, K. A., Ali, H. R., Dunning, M., Brown, G. D., Gojiš, O., Ellis, I. O., Green, A. R., et al. (2012) · Nature · doi:10.1038/nature10730 · Cited by 2,182 · see citing works
Necroptosis and its role in inflammation
Pasparakis, M., & Vandenabeele, P. (2015) · Nature · doi:10.1038/nature14191 · Cited by 2,148 · see citing works
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Landt, S. G., Marinov, G. K., Kundaje, A., Kheradpour, P., Pauli, F., Batzoglou, S., Bernstein, B. E., Bickel, P., Brown, J. B., Cayting, P., et al. (2012) · Genome Research · doi:10.1101/gr.136184.111 · Cited by 2,033 · see citing works
Normalization of RNA-seq data using factor analysis of control genes or samples
Risso, D., Ngai, J., Speed, T. P., & Dudoit, S. (2014) · Nature Biotechnology · doi:10.1038/nbt.2931 · Cited by 1,985 · see citing works
Hepatocellular carcinoma pathogenesis: from genes to environment
Farazi, P. A., & DePinho, R. A. (2006) · Nature reviews. Cancer · doi:10.1038/nrc1934 · Cited by 1,979 · see citing works
Senescence surveillance of pre-malignant hepatocytes limits liver cancer development
Kang, T.-W., Yevsa, T., Woller, N., Hoenicke, L., Wuestefeld, T., Dauch, D., Hohmeyer, A., Gereke, M., Rudalska, R., Potapova, A., et al. (2011) · Nature · doi:10.1038/nature10599 · Cited by 1,621 · see citing works
Self-citationA framework for oligonucleotide microarray preprocessing
Carvalho, B. S., & Irizarry, R. A. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq431 · Cited by 1,554 · see citing works
Differential Oestrogen Receptor Binding is Associated with Clinical Outcome in Breast Cancer
Stark, R. (2012) · Lecture notes in computer science · doi:10.1007/978-3-642-29627-7_30 · Cited by 1,403 · see citing works
Pathogenesis, Diagnosis, and Management of Cholangiocarcinoma
Ilyas, S. I., & Gores, G. J. (2013) · Gastroenterology · doi:10.1053/j.gastro.2013.10.013 · Cited by 1,311 · see citing works
Postic, C., Shiota, M., Niswender, K. D., Jetton, T. L., Chen, Y., Moates, J. M., Shelton, K. D., Lindner, J., Cherrington, A. D., & Magnuson, M. A. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.1.305 · Cited by 1,302 · see citing works
The Pseudokinase MLKL Mediates Necroptosis via a Molecular Switch Mechanism
Murphy, J. M., Czabotar, P. E., Hildebrand, J. M., Lucet, I. S., Zhang, J.-G., Alvarez-Diaz, S., Lewis, R., Lalaoui, N., Metcalf, D., Webb, A. I., et al. (2013) · Immunity · doi:10.1016/j.immuni.2013.06.018 · Cited by 1,220 · see citing works
Kraupp, B. G., Ruttkay-Nedecký, B., Koudelka, H., Bukowska, K., Bursch, W., & Schulte‐Hermann, R. (1995) · Hepatology · doi:10.1002/hep.1840210534 · Cited by 1,167 · see citing works
Comparison of Sequencing Utility Programs
Aronesty, E. (2013) · The Open Bioinformatics Journal · doi:10.2174/1875036201307010001 · Cited by 1,144 · see citing works
GC-Content Normalization for RNA-Seq Data
Risso, D., Schwartz, K., Sherlock, G., & Dudoit, S. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-480 · Cited by 867 · see citing works
Cell Death and Cell Death Responses in Liver Disease: Mechanisms and Clinical Relevance
Luedde, T., Kaplowitz, N., & Schwabe, R. F. (2014) · Gastroenterology · doi:10.1053/j.gastro.2014.07.018 · Cited by 760 · see citing works
Self-citationRegulation of RIP1 kinase signalling at the crossroads of inflammation and cell death
Ofengeim, D., & Yuan, J. (2013) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3683 · Cited by 615 · see citing works
Cholangiocarcinomas can originate from hepatocytes in mice
Fan, B., Malato, Y., Calvisi, D. F., Naqvi, S., Razumilava, N., Ribback, S., Gores, G. J., Dombrowski, F., Evert, M., Chen, X., et al. (2012) · Journal of Clinical Investigation · doi:10.1172/jci63212 · Cited by 529 · see citing works
Grasl‐Kraupp, B. (1995) · Hepatology · doi:10.1016/0270-9139(95)90071-3 · Cited by 517 · see citing works
Common Molecular Subtypes Among Asian Hepatocellular Carcinoma and Cholangiocarcinoma
Chaisaingmongkol, J., Budhu, A., Dang, H., Rabibhadana, S., Pupacdi, B., Kwon, S. M., Forgues, M., Pomyen, Y., Bhudhisawasdi, V., Lertprasertsuke, N., et al. (2017) · Cancer Cell · doi:10.1016/j.ccell.2017.05.009 · Cited by 434 · see citing works
Self-citationConrad, M. L., Ferstl, R., Teich, R., Brand, S., Blümer, N., Yildirim, A. Ö., Patrascan, C. C., Hanuszkiewicz, A., Akira, S., Wagner, H., et al. (2009) · The Journal of Experimental Medicine · doi:10.1084/jem.20090845 · Cited by 317 · see citing works
A positive feedback loop between RIP3 and JNK controls non‐alcoholic steatohepatitis
Gautheron, J., Vucur, M., Reisinger, F., Cardenas, D. V., Roderburg, C., Koppe, C., Kreggenwinkel, K., Schneider, A. T., Bartneck, M., Neumann, U. P., et al. (2014) · EMBO Molecular Medicine · doi:10.15252/emmm.201403856 · Cited by 314 · see citing works
Self-citationFunctional and genetic deconstruction of the cellular origin in liver cancer
Marquardt, J. U., Andersen, J. B., & Thorgeirsson, S. S. (2015) · Nature reviews. Cancer · doi:10.1038/nrc4017 · Cited by 300 · see citing works
Dauch, D., Rudalska, R., Cossa, G., Nault, J., Kang, T.-W., Wüestefeld, T., Hohmeyer, A., Imbeaud, S., Yevsa, T., Hoenicke, L., et al. (2016) · Nature Medicine · doi:10.1038/nm.4107 · Cited by 274 · see citing works
Self-citationUsing MACS to Identify Peaks from ChIP‐Seq Data
Feng, J., Liu, T., & Zhang, Y. (2011) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi0214s34 · Cited by 253 · see citing works
Desmoplastic stroma and cholangiocarcinoma: Clinical implications and therapeutic targeting
Sirica, A. E., & Gores, G. J. (2013) · Hepatology · doi:10.1002/hep.26762 · Cited by 220 · see citing works
Cancer gene discovery in hepatocellular carcinoma
Zender, L., Villanueva, A., Tovar, V., Sia, D., Chiang, D. Y., & Llovet, J. M. (2010) · Journal of Hepatology · doi:10.1016/j.jhep.2009.12.034 · Cited by 186 · see citing works
Self-citationSuzuki, A., Sekiya, S., Büscher, D., Izpisúa Belmonte, J. C., & Taniguchi, H. (2008) · Development · doi:10.1242/dev.016634 · Cited by 136 · see citing works
Activation of necroptosis in human and experimental cholestasis
Afonso, M. B., Rodrigues, P., Simão, A., Ofengeim, D., Carvalho, T., Amaral, J. D., Gaspar, M. M., Cortez-Pinto, H., Castro, R., Yuan, J., et al. (2016) · Cell Death and Disease · doi:10.1038/cddis.2016.280 · Cited by 126 · see citing works
A simple method for generating high-resolution maps of genome-wide protein binding
Skene, P. J., & Henikoff, S. (2015) · eLife · doi:10.7554/elife.09225 · Cited by 117 · see citing works
Roles of hepatic stellate cells in liver inflammation: a new perspective
Fujita, T., & Narumiya, S. (2016) · Inflammation and Regeneration · doi:10.1186/s41232-016-0005-6 · Cited by 116 · see citing works
Pattern of distant extrahepatic metastases in primary liver cancer: a SEER based study
Wu, W., He, X., Andayani, D., Yang, L., Ye, J., Li, Y., Chen, Y., & Lan-juan, L. (2017) · Journal of Cancer · doi:10.7150/jca.19056 · Cited by 75 · see citing works
Li, X., Tao, J., Cigliano, A., Sini, M., Caldéraro, J., Azoulay, D., Wang, C., Liu, Y., Jiang, L., Evert, K., et al. (2015) · Oncotarget · doi:10.18632/oncotarget.3546 · Cited by 65 · see citing works
Contributions of new hepatocyte lineages to liver growth, maintenance, and regeneration in mice
Iverson, S. V., Comstock, K. M., Kundert, J. A., & Schmidt, E. E. (2011) · Hepatology · doi:10.1002/hep.24398 · Cited by 43 · see citing works
Gürlevik, E., Fleischmann-Mundt, B., Armbrecht, N., Longerich, T., Woller, N., Kloos, A., Hoffmann, D., Schambach, A., Wirth, T. C., Manns, M. P., et al. (2013) · Hepatology · doi:10.1002/hep.26468 · Cited by 39 · see citing works
Self-citationAssociation of nonalcoholic fatty liver disease and liver cancer
Schulz, P. O., Ferreira, F. G., Nascimento, M. D. F. A., Vieira, A., Ribeiro, M. A., David, A. I., & Szutan, L. A. (2015) · World Journal of Gastroenterology · doi:10.3748/wjg.v21.i3.913 · Cited by 31 · see citing works
DNA methylation and carcinogenesis of PRDM5 in cervical cancer
Cheng, H.-Y., Chen, X.-W., Cheng, L., Liu, Y.-D., & Lou, G. (2010) · Journal of Cancer Research and Clinical Oncology · doi:10.1007/s00432-010-0840-9 · Cited by 25 · see citing works
Nkontchou, G., Nhieu, J. T. V., Ziol, M., Tengher-Barna, I., Mahmoudi, A., Roulot, D. M., Bourcier, V., Ganne‐Carrié, N., Grando–Lemaire, V., Trinchet, J., et al. (2012) · European Journal of Gastroenterology & Hepatology · doi:10.1097/meg.0b013e328357cdd7 · Cited by 18 · see citing works
Flagged first, then by citations
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Sorted by citations
Llovet, J. M., Kelley, R. K., Villanueva, A., Singal, A. G., Pikarsky, E., Roayaie, S., Lencioni, R., Koike, K., Zucman-Rossi, J., & Finn, R. S. (2021) · Nature Reviews Disease Primers · doi:10.1038/s41572-020-00240-3 · Cited by 7,055 · see citing works
Cell death: a review of the major forms of apoptosis, necrosis and autophagy
D'Arcy, M. (2019) · Cell Biology International · doi:10.1002/cbin.11137 · Cited by 2,328 · see citing works
The role of necroptosis in cancer biology and therapy
Gong, Y., Fan, Z., Luo, G., Yang, C., Huang, Q., Fan, K., He, C., Jin, K., Ni, Q., Yu, X., et al. (2019) · Molecular Cancer · doi:10.1186/s12943-019-1029-8 · Cited by 1,047 · see citing works
Liver tumour immune microenvironment subtypes and neutrophil heterogeneity
Xue, R., Zhang, Q., Cao, Q., Kong, R., Xiao, X., Liu, H., Feng, M., Wang, F., Cheng, J., Zhao, L., et al. (2022) · Nature · doi:10.1038/s41586-022-05400-x · Cited by 956 · see citing works
Tumor Cell Biodiversity Drives Microenvironmental Reprogramming in Liver Cancer
Ma, L., Hernandez, M. O., Zhao, Y., Mehta, M., Tran, B. Q., Kelly, M. C., Rae, Z., Hernandez, J. M., Davis, J. L., Martin, S. P., et al. (2019) · Cancer Cell · doi:10.1016/j.ccell.2019.08.007 · Cited by 844 · see citing works
Self-citationTumour evolution in hepatocellular carcinoma
Craig, A. J., von Felden, J., García‐Lezana, T., Sarcognato, S., & Villanueva, A. (2019) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-019-0229-4 · Cited by 825 · see citing works
Targeting ROS in cancer: rationale and strategies
Glorieux, C., Liu, S., Trachootham, D., & Huang, P. (2024) · Nature Reviews Drug Discovery · doi:10.1038/s41573-024-00979-4 · Cited by 700 · see citing works
The immunological and metabolic landscape in primary and metastatic liver cancer
Li, X., Ramadori, P., Pfister, D., Seehawer, M., Zender, L., & Heikenwalder, M. (2021) · Nature Reviews. Cancer · doi:10.1038/s41568-021-00383-9 · Cited by 580 · see citing works
Self-citationNecroptosis and tumor progression
Yan, J., Wan, P., Choksi, S., & Liu, Z.-G. (2021) · Trends in cancer · doi:10.1016/j.trecan.2021.09.003 · Cited by 449 · see citing works
The Apoptosis Paradox in Cancer
Morana, O., Wood, W., & Gregory, C. D. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23031328 · Cited by 430 · see citing works
Promotion of cholangiocarcinoma growth by diverse cancer-associated fibroblast subpopulations
Affo, S., Nair, A., Brundu, F., Ravichandra, A., Bhattacharjee, S., Matsuda, M., Chin, L., Filliol, A., Wen, W., Song, X., et al. (2021) · Cancer Cell · doi:10.1016/j.ccell.2021.03.012 · Cited by 416 · see citing works
Self-citationTumor initiation and early tumorigenesis: molecular mechanisms and interventional targets
Zhang, S., Xiao, X., Yi, Y., Wang, X., Zhu, L., Shen, Y., Lin, D., & Wu, C. H. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-024-01848-7 · Cited by 440 · see citing works
Self-citationATF4 suppresses hepatocarcinogenesis by inducing SLC7A11 (xCT) to block stress-related ferroptosis
He, F., Zhang, P., Liu, J., Wang, R., Kaufman, R. J., Yaden, B. C., & Karin, M. (2023) · Journal of Hepatology · doi:10.1016/j.jhep.2023.03.016 · Cited by 399 · see citing works
Modes of Regulated Cell Death in Cancer
Koren, E., & Fuchs, Y. (2021) · Cancer Discovery · doi:10.1158/2159-8290.cd-20-0789 · Cited by 378 · see citing works
Cell Death in the Origin and Treatment of Cancer
Strasser, A., & Vaux, D. L. (2020) · Molecular Cell · doi:10.1016/j.molcel.2020.05.014 · Cited by 370 · see citing works
Gut Microbiome Directs Hepatocytes to Recruit MDSCs and Promote Cholangiocarcinoma
Zhang, Q., Ma, C., Duan, Y., Heinrich, B., Rosato, U., Diggs, L. P., Ma, L., Roy, S., Fu, Q., Brown, Z. J., et al. (2020) · Cancer Discovery · doi:10.1158/2159-8290.cd-20-0304 · Cited by 263 · see citing works
Self-citationMichels, B. E., Mosa, M. H., Streibl, B. I., Zhan, T., Menche, C., Abou-El-Ardat, K., Darvishi, T., Członka, E., Wagner, S., Winter, J., et al. (2020) · Cell Stem Cell · doi:10.1016/j.stem.2020.04.003 · Cited by 222 · see citing works
Peritumoral activation of the Hippo pathway effectors YAP and TAZ suppresses liver cancer in mice
Moya, I. M., Castaldo, S. A., den Mooter, L. V., Soheily, S., Sansores-García, L., Jacobs, J., Mannaerts, I., Xie, J., Verboven, E., Hillen, H., et al. (2019) · Science · doi:10.1126/science.aaw9886 · Cited by 219 · see citing works
Self-citationCombined locoregional-immunotherapy for liver cancer
Greten, T. F., Mauda‐Havakuk, M., Heinrich, B., Korangy, F., & Wood, B. J. (2019) · Journal of Hepatology · doi:10.1016/j.jhep.2019.01.027 · Cited by 211 · see citing works
Carcinogenesis: Failure of resolution of inflammation?
Fishbein, A., Hammock, B. D., Serhan, C. N., & Panigrahy, D. (2020) · Pharmacology & Therapeutics · doi:10.1016/j.pharmthera.2020.107670 · Cited by 207 · see citing works
Gut epithelial TSC1/mTOR controls RIPK3-dependent necroptosis in intestinal inflammation and cancer
Xie, Y., Zhao, Y., Shi, L., Li, W., Chen, K., Li, M., Chen, X., Zhang, H., Li, T., Matsuzawa, Y., et al. (2020) · Journal of Clinical Investigation · doi:10.1172/jci133264 · Cited by 198 · see citing works
Hou, J., Zhang, H., Sun, B., & Karin, M. (2019) · Journal of Hepatology · doi:10.1016/j.jhep.2019.08.014 · Cited by 191 · see citing works
Necroptosis, tumor necrosis and tumorigenesis
Liu, Z.-G., & Jiao, D. (2020) · Cell Stress · doi:10.15698/cst2020.01.208 · Cited by 188 · see citing works
Yang, Y., Wu, M., Cao, D., Yang, C., Jin, J., Wu, L., Hong, X., Li, W., Lu, L., Li, J., et al. (2021) · Science Advances · doi:10.1126/sciadv.abf6290 · Cited by 187 · see citing works
Self-citationThe pathological features of regulated necrosis
Tonnus, W., Meyer, C., Paliege, A., Belavgeni, A., von Mäßenhausen, A., Bornstein, S. R., Hugo, C., Becker, J. U., & Linkermann, A. (2019) · The Journal of Pathology · doi:10.1002/path.5248 · Cited by 160 · see citing works
DefED-Net: Deformable Encoder-Decoder Network for Liver and Liver Tumor Segmentation
Lei, T., Wang, R., Zhang, Y., Wan, Y., Liu, C., & Nandi, A. K. (2021) · IEEE Transactions on Radiation and Plasma Medical Sciences · doi:10.1109/trpms.2021.3059780 · Cited by 150 · see citing works
The potential role of necroptosis in inflammaging and aging
Royce, G. H., Brown‐Borg, H. M., & Deepa, S. S. (2019) · GeroScience · doi:10.1007/s11357-019-00131-w · Cited by 135 · see citing works
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Yap-Sox9 signaling determines hepatocyte plasticity and lineage-specific hepatocarcinogenesis
Liu, Y., Zhuo, S., Zhou, Y., Ma, L., Sun, Z., Wu, X., Wang, X. W., Gao, B., & Yang, Y. (2021) · Journal of Hepatology · doi:10.1016/j.jhep.2021.11.010 · Cited by 129 · see citing works
Self-citationThe role of necroptosis in cancer: A double-edged sword?
Qin, X., Ma, D., Tan, Y., Wang, H., & Cai, Z. (2019) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2019.01.006 · Cited by 128 · see citing works
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da Cunha, B. R., Domingos, C., Stefanini, A. C. B., Henrique, T., Polachini, G. M., Castelo‐Branco, P., & Tajara, E. H. (2019) · Journal of Cancer · doi:10.7150/jca.21780 · Cited by 128 · see citing works
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Hakobyan, D., Medina, C. F., Dusserre, N., Stachowicz, M., Handschin, C., Fricain, J., Guillermet‐Guibert, J., & Oliveira, H. (2020) · Biofabrication · doi:10.1088/1758-5090/ab7cb8 · Cited by 123 · see citing works
Joseph, N. M., Tsokos, C. G., Umetsu, S. E., Shain, A. H., Kelley, R. K., Onodera, C. S., Bowman, S., Talevich, E., Ferrell, L. D., Kakar, S., et al. (2019) · The Journal of Pathology · doi:10.1002/path.5243 · Cited by 122 · see citing works
Immune microenvironment in hepatocellular carcinoma: from pathogenesis to immunotherapy
Seyhan, D., Allaire, M., Fu, Y., Conti, F., Wang, X. W., Gao, B., & Lafdil, F. (2025) · Cellular and Molecular Immunology · doi:10.1038/s41423-025-01308-4 · Cited by 131 · see citing works
Self-citationCholangiocarcinoma: a guide for the nonspecialist
Alsaleh, M., Leftley, Z., Barbera, T. A., Sithithaworn, P., Khuntikeo, N., Loilome, W., Yongvanit, P., Cox, I. J., Chamodol, N., Syms, R. R. A., et al. (2018) · International Journal of General Medicine · doi:10.2147/ijgm.s186854 · Cited by 119 · see citing works
Zhou, T., Li, S., Xiang, D., Liu, J., Sun, W. C., Cui, X., Ning, B., Li, X., Cheng, Z., Jiang, W., et al. (2020) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-020-00299-0 · Cited by 118 · see citing works
Paraptosis: a unique cell death mode for targeting cancer
Hanson, S., Dharan, A., Jinsha, P. V., Pal, S., Nair, B. G., Kar, R., & Mishra, N. (2023) · Frontiers in Pharmacology · doi:10.3389/fphar.2023.1159409 · Cited by 117 · see citing works
Multitasking Kinase RIPK1 Regulates Cell Death and InflammationPreprint
Newton, K. (2019) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a036368 · Cited by 106 · see citing works
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Wang, G., Wang, Q., Liang, N. N., Xue, H., Yang, T., Chen, X., Qiu, Z., Zeng, C., Sun, T., Yuan, W., et al. (2020) · Cell Death and Disease · doi:10.1038/s41419-020-2509-x · Cited by 109 · see citing works
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Conde de la Rosa, L., Goicoechea, L., Torres, S., Garcia-Ruiz, C., & Fernandez-Checa, J. C. (2022) · Livers · doi:10.3390/livers2040023 · Cited by 107 · see citing works
CD73 promotes tumor metastasis by modulating RICS/RhoA signaling and EMT in gastric cancer
Xu, Z., Gu, C.-C., Yao, X., Guo, W., Wang, H., Tian, L., Li, F., Chen, D., Wu, J., Ye, G., et al. (2020) · Cell Death and Disease · doi:10.1038/s41419-020-2403-6 · Cited by 105 · see citing works
Jiang, K., Dong, C., Yin, Z., Li, R., Mao, J., Wang, C., Zhang, J., Gao, Z., Liang, R., Wang, Q., et al. (2020) · Cell Death and Disease · doi:10.1038/s41419-020-03179-1 · Cited by 103 · see citing works
Afonso, M. B., Rodrigues, P. M., Mateus‐Pinheiro, M., Simão, A. L., Gaspar, M. M., Majdi, A., Arretxe, E., Alonso, C., Santos‐Laso, Á., Jiménez-Agüero, R., et al. (2020) · Gut · doi:10.1136/gutjnl-2020-321767 · Cited by 103 · see citing works
Cholangiocarcinoma 2026: status quo, unmet needs and priorities
Bañales, J. M., Rodrigues, P. M., Affò, S., Andersen, J. B., Aspichueta, P., Boulter, L., Bridgewater, J. A., Calvisi, D. F., Cárdenas, A., Cardinale, V., et al. (2025) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-025-01153-w · Cited by 108 · see citing works
Self-citationNanomedicines inhibiting tumor metastasis and recurrence and their clinical applications
Kong, X., Cheng, R., Wang, J., Fang, Y., & Hwang, K. C. (2020) · Nano Today · doi:10.1016/j.nantod.2020.101004 · Cited by 93 · see citing works
Necroptosis pathways in tumorigenesis
Zhang, T., Wang, Y., Inuzuka, H., & Wei, W. (2022) · Seminars in Cancer Biology · doi:10.1016/j.semcancer.2022.07.007 · Cited by 93 · see citing works
RIP Kinases in Liver Cell Death, Inflammation and Cancer
Kondylis, V., & Pasparakis, M. (2018) · Trends in Molecular Medicine · doi:10.1016/j.molmed.2018.10.007 · Cited by 84 · see citing works
Liver Inflammation and Hepatobiliary Cancers.
Leone, V., Ali, A., Weber, A., Tschaharganeh, D., & Heikenwalder, M. (2021) · Trends in Cancer · doi:10.1016/j.trecan.2021.01.012 · Cited by 79 · see citing works
Self-citationComplex roles of necroptosis in cancer
Zhu, F., Zhang, W., Yang, T., & He, S. (2019) · Journal of Zhejiang University SCIENCE B · doi:10.1631/jzus.b1900160 · Cited by 82 · see citing works
Untangling the web of intratumour heterogeneity
Li, Z., Seehawer, M., & Polyák, K. (2022) · Nature Cell Biology · doi:10.1038/s41556-022-00969-x · Cited by 81 · see citing works
Self-citationCariani, E., & Missale, G. (2019) · Liver International · doi:10.1111/liv.14192 · Cited by 81 · see citing works
The structure of a minimum amyloid fibril core formed by necroptosis-mediating RHIM of human RIPK3
Wu, X., Ma, Y., Zhao, K., Zhang, J., Sun, Y., Li, Y., Dong, X.-Q., Hu, H., Liu, J., Wang, J., et al. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2022933118 · Cited by 80 · see citing works
NAD+ salvage governs mitochondrial metabolism, invigorating natural killer cell antitumor immunity
Guo, X., Tan, S., Wang, T., Sun, R., Li, S., Tian, P., Li, M., Wang, Y., Zhang, Y., Yan, Y., et al. (2022) · Hepatology · doi:10.1002/hep.32658 · Cited by 81 · see citing works
Cell of origin in biliary tract cancers and clinical implications
Moeini, A., Haber, P. K., & Sia, D. (2021) · JHEP Reports · doi:10.1016/j.jhepr.2021.100226 · Cited by 80 · see citing works
Shi, S., Wang, X., van der Laan, L. J. W., Pan, Q., & Verstegen, M. M. A. (2021) · Transplantation · doi:10.1097/tp.0000000000003691 · Cited by 80 · see citing works
Self-citationFouassier, L., Marzioni, M., Afonso, M. B., Dooley, S., Gaston, K., Giannelli, G., Rodrigues, C. M. P., Lozano, E., Mancarella, S., Segatto, O., et al. (2019) · Liver International · doi:10.1111/liv.14102 · Cited by 78 · see citing works
Aizawa, S., Brar, G., & Tsukamoto, H. (2019) · Gut and Liver · doi:10.5009/gnl18486 · Cited by 77 · see citing works
Sun, J., Esplugues, E., Bort, A., Cardelo, M., Ruz-Maldonado, I., Fernández-Tussy, P., Wong, C., Wang, H., Ojima, I., Kaczocha, M., et al. (2024) · Nature Metabolism · doi:10.1038/s42255-024-01019-6 · Cited by 81 · see citing works
Liu, X., Lu, Y., & Qin, S. (2021) · Future Oncology · doi:10.2217/fon-2020-1290 · Cited by 76 · see citing works
Fishbein, A., Wang, W., Yang, H., Yang, J., Hallisey, V. M., Deng, J., Verheul, S. M. L., Hwang, S. H., Gartung, A., Wang, Y., et al. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2007412117 · Cited by 75 · see citing works
Cristinziano, G., Porru, M., Lamberti, D., Buglioni, S., Rollo, F., Amoreo, C. A., Manni, I., Giannarelli, D., Cristofoletti, C., Russo, G., et al. (2021) · Journal of Hepatology · doi:10.1016/j.jhep.2021.02.032 · Cited by 75 · see citing works
Quantitative and Dynamic Catalogs of Proteins Released during Apoptotic and Necroptotic Cell Death
Tanzer, M. C., Frauenstein, A., Stafford, C. A., Phulphagar, K. M., Mann, M., & Meissner, F. (2020) · Cell Reports · doi:10.1016/j.celrep.2019.12.079 · Cited by 74 · see citing works
Xie, J., Liang, C., Tang, Q., Wei, W., Cao, Y., Wu, C., Hang, J., Zhang, K., Shi, J., & Wang, M. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.847624 · Cited by 74 · see citing works
Multifaceted Role of PRDM Proteins in Human Cancer
Casamassimi, A., Rienzo, M., Zazzo, E. D., Sorrentino, A., Fiore, D., Proto, M., Moncharmont, B., Gazzerro, P., Bifulco, M., & Abbondanza, C. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21072648 · Cited by 73 · see citing works
Mediators of necroptosis: from cell death to metabolic regulation
Wu, X., Nagy, L. E., & Gautheron, J. (2024) · EMBO Molecular Medicine · doi:10.1038/s44321-023-00011-z · Cited by 73 · see citing works
Mitochondrial Mechanisms of Necroptosis in Liver Diseases
Xue, C., Gu, X., Li, G., Bao, Z., & Li, L. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms22010066 · Cited by 70 · see citing works
RIPK3 signaling and its role in the pathogenesis of cancers
Liu, S., Joshi, K., Denning, M. F., & Zhang, J. (2021) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-021-03947-y · Cited by 70 · see citing works
The Fire within: Cell-Autonomous Mechanisms in Inflammation-Driven Cancer
Todoric, J., & Karin, M. (2019) · Cancer Cell · doi:10.1016/j.ccell.2019.04.001 · Cited by 68 · see citing works
The gut–liver axis: host microbiota interactions shape hepatocarcinogenesis
Silveira, M. A. D., Bilodeau, S., Greten, T. F., Wang, X. W., & Trinchieri, G. (2022) · Trends in cancer · doi:10.1016/j.trecan.2022.02.009 · Cited by 66 · see citing works
Self-citationDrug delivery strategy in hepatocellular carcinoma therapy
Yang, S., Cai, C., Wang, H., Ma, X., Shao, A., Sheng, J., & Yu, C. (2022) · Cell Communication and Signaling · doi:10.1186/s12964-021-00796-x · Cited by 66 · see citing works
Tian, P., Yang, W., Guo, X., Wang, T., Tan, S., Sun, R., Xiao, R., Wang, Y., Jiao, D., Xu, Y., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-37419-7 · Cited by 66 · see citing works
Lee, Y., Wang, J. J., Luu, M., Noureddin, M., Nissen, N. N., Patel, T. C., Roberts, L. R., Singal, A. G., Gores, G. J., & Yang, J. D. (2021) · Hepatology · doi:10.1002/hep.32007 · Cited by 65 · see citing works
FGFR2 Inhibition in Cholangiocarcinoma
Vogel, A., Segatto, O., Stenzinger, A., & Saborowski, A. L. (2022) · Annual Review of Medicine · doi:10.1146/annurev-med-042921-024707 · Cited by 63 · see citing works
Types of Cell Death from a Molecular Perspective
Hajibabaie, F., Abedpoor, N., & Mohamadynejad, P. (2023) · Biology · doi:10.3390/biology12111426 · Cited by 64 · see citing works
Human liver organoids: From generation to applications
Afonso, M. B., Marques, V., van Mil, S. W. C., & Rodrigues, C. M. P. (2024) · Hepatology · doi:10.1097/hep.0000000000000343 · Cited by 61 · see citing works
LXRα activation and Raf inhibition trigger lethal lipotoxicity in liver cancer
Rudalska, R., Harbig, J., Snaebjornsson, M. T., Klotz, S., Zwirner, S., Taranets, L., Heinzmann, F., Kronenberger, T., Förster, M., Cui, W., et al. (2021) · Nature Cancer · doi:10.1038/s43018-020-00168-3 · Cited by 59 · see citing works
Self-citationCurrent and novel therapeutic opportunities for systemic therapy in biliary cancer
Marı́n, J. J. G., Prete, M. G., Lamarca, Á., Tavolari, S., Landa-Magdalena, A., Brandi, G., Segatto, O., Vogel, A., Macı́as, R. I. R., Rodrigues, P. M., et al. (2020) · British Journal of Cancer · doi:10.1038/s41416-020-0987-3 · Cited by 58 · see citing works
Mechanism of cancer stemness maintenance in human liver cancer
Liang, N. N., Yang, T., Huang, Q., Yu, P., Liu, C., Chen, L., Wang, Q., Wang, G., & He, X. (2022) · Cell Death and Disease · doi:10.1038/s41419-022-04848-z · Cited by 58 · see citing works
Verboom, L., Martens, A., Priem, D., Hoste, E., Sze, M., Vikkula, H., Hove, L. V., Voet, S., Roels, J., Maelfait, J., et al. (2020) · Cell Reports · doi:10.1016/j.celrep.2020.01.028 · Cited by 56 · see citing works
Sirica, A. E., Strazzabosco, M., & Cadamuro, M. (2020) · Advances in cancer research · doi:10.1016/bs.acr.2020.10.005 · Cited by 59 · see citing works
Leibold, J., Ruscetti, M. A., Cao, Z., Ho, Y.-J., Baslan, T., Zou, M., Abida, W. M., Feucht, J., Han, T., Barriga, F. M., et al. (2020) · Cancer Discovery · doi:10.1158/2159-8290.cd-19-1242 · Cited by 56 · see citing works
Liang, B., Zhou, Y., Qian, M., Xu, M., Wang, J., Zhang, Y., Song, X., Wang, H., Lin, S., Ren, C., et al. (2021) · Journal of Hepatology · doi:10.1016/j.jhep.2021.01.044 · Cited by 55 · see citing works
Liver cancer heterogeneity modeled by in situ genome editing of hepatocytes
Tang, M., Zhao, Y., Zhao, J., Wei, S., Liu, M., Zheng, N., Geng, D., Han, S., Zhang, Y., Zhong, G., et al. (2022) · Science Advances · doi:10.1126/sciadv.abn5683 · Cited by 54 · see citing works
RIPK3 dampens mitochondrial bioenergetics and lipid droplet dynamics in metabolic liver disease
Afonso, M. B., Islam, T., Magusto, J., Amorim, R., Lenoir, V., Simões, R. F., Teixeira, J., Silva, L. C., Wendum, D., Jéru, I., et al. (2022) · Hepatology · doi:10.1002/hep.32756 · Cited by 54 · see citing works
Dark Side of Cytotoxic Therapy: Chemoradiation-Induced Cell Death and Tumor Repopulation
Jiang, M., Gu, D.-N., Dai, J., Huang, Q., & Tian, L. (2020) · Trends in cancer · doi:10.1016/j.trecan.2020.01.018 · Cited by 54 · see citing works
Li, J., Huang, S., Zeng, L., Li, K., Yang, L., Gao, S., Guan, C., Zhang, S., Lao, X., Liao, G., et al. (2020) · Cell Death and Disease · doi:10.1038/s41419-020-2538-5 · Cited by 53 · see citing works
Lomphithak, T., Akara-amornthum, P., Murakami, K., Hashimoto, M., Usubuchi, H., Iwabuchi, E., Unno, M., Cai, Z., Sasano, H., & Jitkaew, S. (2021) · Scientific Reports · doi:10.1038/s41598-021-89977-9 · Cited by 53 · see citing works
Liu, L., Huang, L., Chen, W., Zhang, G., Li, Y., Wu, Y., Xiong, J., & Jie, Z. (2022) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2022.811269 · Cited by 52 · see citing works
Combined Hepatocellular-Cholangiocarcinoma: Biology, Diagnosis, and Management
Ye, L., Schneider, J. S., Khaled, N. B., Schirmacher, P., Seifert, C., Frey, L., He, Y., Geier, A., Toni, E. N. D., Zhang, C., et al. (2023) · Liver Cancer · doi:10.1159/000530700 · Cited by 52 · see citing works
MYC in liver cancer: mechanisms and targeted therapy opportunities
Liu, F., Liao, Z., & Zhang, Z. (2023) · Oncogene · doi:10.1038/s41388-023-02861-w · Cited by 52 · see citing works
Epigenome Remodeling in Cholangiocarcinoma
O’Rourke, C. J., Lafuente-Barquero, J. F., & Andersen, J. B. (2019) · Trends in cancer · doi:10.1016/j.trecan.2019.05.002 · Cited by 48 · see citing works
Shi, S., Verstegen, M. M. A., Mezzanotte, L., de Jonge, J., Löwik, C. W. G. M., & van der Laan, L. J. W. (2019) · Liver Transplantation · doi:10.1002/lt.25488 · Cited by 48 · see citing works
Have incidence rates of liver cancer peaked in the United States?
Petrick, J. L., Florio, A. A., Loomba, R. S., & McGlynn, K. A. (2020) · Cancer · doi:10.1002/cncr.32794 · Cited by 48 · see citing works
The Great Escape: The Power of Cancer Stem Cells to Evade Programmed Cell Death
Castelli, V., Giordano, A., Benedetti, E., Giansanti, F., Quintiliani, M., Cimini, A., & d’Angelo, M. (2021) · Cancers · doi:10.3390/cancers13020328 · Cited by 48 · see citing works
Peng, X., Zhu, J.-F., Liu, S., Luo, C., Wu, X., Liu, Z.-T., Li, Y., & Yuan, R.-F. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.990790 · Cited by 38 · see citing works
Lipid Nanoparticle Delivery of Small Proteins for Potent In Vivo RAS Inhibition
Haley, R. M., Chan, A., Billingsley, M. M., Gong, N., Padilla, M. S., Kim, E. H., Wang, H. H., Yin, D., Wangensteen, K. J., Tsourkas, A., et al. (2023) · ACS Applied Materials & Interfaces · doi:10.1021/acsami.3c01501 · Cited by 43 · see citing works
Xie, J., Tian, W., Tang, Y., Zou, Y., Zheng, S., Wu, L., Zeng, Y., Wu, S., Xie, X., & Xie, X. (2022) · Frontiers in Molecular Biosciences · doi:10.3389/fmolb.2022.834593 · Cited by 44 · see citing works
Pannexin‐1 limits the production of proinflammatory cytokines during necroptosis
Douanne, T., André‐Grégoire, G., Trillet, K., Thys, A., Papin, A., Feyeux, M., Hulin, P., Chiron, D., Gavard, J., & Bidère, N. (2019) · EMBO Reports · doi:10.15252/embr.201947840 · Cited by 44 · see citing works
Mitochondrial alterations and signatures in hepatocellular carcinoma
Chen, T., Lin, S.-H., Lee, M., Wang, H., Tsai, K., & Chou, C. (2025) · Cancer and Metastasis Reviews · doi:10.1007/s10555-025-10251-9 · Cited by 43 · see citing works
microRNA-199a-3p inhibits hepatic apoptosis and hepatocarcinogenesis by targeting PDCD4
Li, Z., Zhou, Y., Zhang, L., Jia, K., Wang, S., Wang, M., Li, N., Yu, Y., Cao, X., & Hou, J. (2020) · Oncogenesis · doi:10.1038/s41389-020-00282-y · Cited by 45 · see citing works
- Authors
- Seehawer, M., Heinzmann, F., D’Artista, L., Harbig, J., Roux, P.-F., Hoenicke, L., Dang, H., Klotz, S., Robinson, L., Doré, G., Rozenblum, N., Kang, T.-W., Chawla, R., Buch, T., Vucur, M., Roth, M., Zuber, J., Luedde, T., Sipos, B., Longerich, T., Heikenwälder, M., Wang, X. W., Bischof, O., & Zender, L.
- Affiliations
- Universitätsklinikum Tübingen (DE)
- Inserm (FR)
- National Cancer Institute (US)
- Institut Pasteur (FR)
- University of Zurich (CH)
- Universitätsklinikum Aachen (DE)
- Research Institute of Molecular Pathology (AT)
- University of Tübingen (DE)
- University Hospital Heidelberg (DE)
- German Cancer Research Center (DE)
- Corresponding author
- Zender, Lars
- ORCID
- Venue
- Nature
- Published
- 2018-09-12
- Volume
- 562
- Issue
- 7725
- Pages
- 69-75
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC8111790
- OpenAlex
- W2890271012
- Cited by
- 406
- References
- 47
- Citations by year
- 2026: 11 · 2025: 43 · 2024: 40 · 2023: 82 · 2022: 83 · 2021: 60 · 2020: 39 · 2019: 43 · 2018: 5
- FWCI
- 23.03
- Type
- journal article
- Language
- en
- Update notices
- correction (2018-11-08)
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- HAL (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- RWTH Publications (RWTH Aachen) (submittedVersion)
- Zurich Open Repository and Archive (University of Zurich) (submittedVersion)
- Funders
- National Institutes of Health
- National Cancer Institute (Z01BC010313, R01CA136533)
- Topics
- Health Sciences › Medicine › Hepatology › Liver physiology and pathology
- Health Sciences › Medicine › Surgery › Cholangiocarcinoma and Gallbladder Cancer Studies
- Health Sciences › Medicine › Hepatology › Hepatocellular Carcinoma Treatment and Prognosis
- Keywords
- necroptosis, tumor microenvironment, lineage commitment, hepatocellular carcinoma, intrahepatic cholangiocarcinoma, hepatocarcinogenesis, epigenetic regulation, TBX3, PRDM5, apoptosis, hepatocyte transformation, cytokine microenvironment
- MeSH terms
- Animals, Cell Differentiation, Disease Models, Animal, DNA Transposable Elements, DNA-Binding Proteins, Female, Carcinoma, Hepatocellular, Humans, Liver Neoplasms, Male, Mosaicism, Necrosis, Genes, ras, Transcription Factors, Cytokines, Genes, myc, Apoptosis, Cholangiocarcinoma, Cell Lineage, Cyclin-Dependent Kinase Inhibitor p16, T-Box Domain Proteins, Gene Expression Profiling, Hepatocytes, Epigenesis, Genetic, Proto-Oncogene Proteins c-akt, Mice, Tumor Microenvironment, Carcinogenesis
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