The Sequence Alignment/Map format and SAMtools

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Items 401–500 of 1,715

1. Corset: enabling differential gene expression analysis for
   N. Davidson, Alicia Oshlack · 2014 · Genome biology
2. Chromothripsis and Kataegis Induced by Telomere Crisis
   Maciejowski, John, Li, Yilong, Bosco, Nazario, Campbell, Peter J., de Lange, Titia · 2015 · Cell
3. The genome of the recently domesticated crop plant sugar beet (Beta vulgaris)
   Juliane C. Dohm, André E. Minoche, Daniela Holtgräwe, Salvador Capella-Gutiérrez, Falk Zakrzewski, Hakim Tafer, Oliver Rupp, Thomas Rosleff Sörensen, Ralf Stracke, Richard Reinhardt et al. · 2013 · Nature
4. Fragment Length of Circulating Tumor DNA
   Hunter R. Underhill, Jacob Otto Kitzman, Sabine Hellwig, Noah C. Welker, Riza M. Daza, Daniel N. Baker, Keith M. Gligorich, Robert Rostomily, Mary P. Bronner, Jay Shendure · 2016 · PLoS Genetics
5. Emergence of constitutively active estrogen receptor-α mutations in pretreated advanced estrogen receptor-positive breast cancer
   Jeselsohn, Rinath, Yelensky, Roman, Buchwalter, Gilles, Frampton, Garrett, Meric-Bernstam, Funda, Gonzalez-Angulo, Ana Maria, Ferrer-Lozano, Jaime, Perez-Fidalgo, Jose A., Cristofanilli, Massimo, Gómez, Henry et al. · 2014 · Clinical Cancer Research
6. Inherited Mutations in 17 Breast Cancer Susceptibility Genes Among a Large Triple-Negative Breast Cancer Cohort Unselected for Family History of Breast Cancer
   Fergus J. Couch, Steven N. Hart, Priyanka Sharma, Amanda Ewart Toland, Xianshu Wang, Penelope L. Miron, Janet E. Olson, Andrew K. Godwin, V. Shane Pankratz, Curtis Olswold et al. · 2014 · Journal of Clinical Oncology
7. High-throughput epitope discovery reveals frequent recognition of neo-antigens by CD4+ T cells in human melanoma
   Carsten Linnemann, Marit M. van Buuren, Laura Bies, Els M.E. Verdegaal, Remko Schotte, Jorg J. A. Calis, Sam Behjati, Arno Velds, Henk Hilkmann, Dris El Atmioui et al. · 2014 · Nature Medicine
8. The UCSC Genome Browser database: 2014 update
   Karolchik, Donna, Barber, Galt P., Casper, Jonathan, Clawson, Hiram, Cline, Melissa S., Diekhans, Mark, Dreszer, Timothy R., Fujita, Pauline A., Guruvadoo, Luvina, Haeussler, Maximilian et al. · 2014 · Nucleic Acids Research
9. MuSiC: Identifying mutational significance in cancer genomes
   Nathan D. Dees, Qunyuan Zhang, Cyriac Kandoth, Michael C. Wendl, William S. Schierding, Daniel C. Koboldt, Thomas B. Mooney, Matthew B. Callaway, David J. Dooling, Elaine R. Mardis et al. · 2012 · Genome Research
10. Genome-wide enhancer maps link risk variants to disease genes
    Nasser, Joseph, Bergman, Drew T., Fulco, Charles P., Guckelberger, Philine, Doughty, Benjamin R., Patwardhan, Tejal A., Jones, Thouis R., Nguyen, Tung H., Ulirsch, Jacob C., Lekschas, Fritz et al. · 2021 · Nature
11. The tumor microenvironment underlies acquired resistance to CSF-1R inhibition in gliomas
    Daniela F. Quail, Robert L. Bowman, Leila Akkari, Marsha L. Quick, Alberto J. Schuhmacher, Jason T. Huse, Eric C. Holland, James C. Sutton, Johanna A. Joyce · 2016 · Science
12. Genome flux and stasis in a five millennium transect of European prehistory
    Gamba, Cristina, Jones, Eppie R., Teasdale, Matthew D., McLaughlin, Russell L., Gonzalez-Fortes, Gloria, Mattiangeli, Valeria, Domboróczki, László, Kővári, Ivett, Pap, Ildikó, Anders, Alexandra et al. · 2014 · Nature Communications
13. Tablet-next generation sequence assembly visualization.
    Milne, Iain, Bayer, Micha, Cardle, Linda, Shaw, Paul, Stephen, Gordon, Wright, Frank, Marshall, David · 2010 · Bioinformatics
14. Cytosine, but not adenine, base editors induce genome-wide off-target mutations in rice
    Jin, Shuai, Zong, Yuan, Gao, Qiang, Zhu, Zixu, Wang, Yanpeng, Qin, Peng, Liang, Chengzhi, Wang, Daowen, Qiu, Jin-Long, Zhang, Feng et al. · 2019 · Science
15. A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples
    Viet Loan Dao Thi, Konrad Herbst, Kathleen Börner, Matthias Meurer, Lukas P. M. Kremer, Daniel Kirrmaier, Andrew Freistaedter, Dimitrios Papagiannidis, Carla V. Galmozzi, Megan Lynn Stanifer et al. · 2020 · Science Translational Medicine
16. RaGOO: fast and accurate reference-guided scaffolding of draft genomes
    Michael Alonge, Sebastian Soyk, Srividya Ramakrishnan, Xingang Wang, Sara Goodwin, Fritz Joachim Sedlazeck, Zachary B. Lippman, Michael C. Schatz · 2019 · Genome biology
17. METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks
    Zhichao Zhou, Patricia Q. Tran, Adam M. Breister, Yang Liu, Kristopher Kieft, Elise S. Cowley, Ulaş Karaöz, Karthik Anantharaman · 2022 · Microbiome
18. Proteogenomic and metabolomic characterization of human glioblastoma
    Wang, Liang-Bo, Karpova, Alla, Gritsenko, Marina A., Kyle, Jennifer E., Cao, Song, Li, Yize, Rykunov, Dmitry, Colaprico, Antonio, Rothstein, Joseph H., Hong, Runyu et al. · 2021 · Cancer Cell
19. Genome sequence and genetic diversity of the common carp, Cyprinus carpio
    Peng Xu, Xiaofeng Zhang, Xumin Wang, Jiong-Tang Li, Guiming Liu, Youyi Kuang, Jian He Xu, Xianhu Zheng, Lufeng Ren, Guo‐Liang Wang et al. · 2014 · Nature Genetics
20. Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding
    Hsieh, Tsung-Han S., Cattoglio, Claudia, Slobodyanyuk, Elena, Hansen, Anders S., Rando, Oliver J., Tjian, Robert, Darzacq, Xavier · 2020 · Molecular Cell
21. Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina–associated domains
    Berman, Benjamin P, Weisenberger, Daniel J, Aman, Joseph F, Hinoue, Toshinori, Ramjan, Zachary, Liu, Yaping, Noushmehr, Houtan, Lange, Christopher P E, van Dijk, Cornelis M, Tollenaar, Rob A E M et al. · 2012 · Nature Genetics
22. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
    Keith R. Bradnam, Joseph Fass, Anton Alexandrov, Paul Baranay, Michael Bechner, İnanç Birol, Sébastien Boisvert, Jarrod Chapman, Guillaume Chapuis, Rayan Chikhi et al. · 2013 · GigaScience
23. A DNA methylation atlas of normal human cell types
    Loyfer, Netanel, Magenheim, Judith, Peretz, Ayelet, Cann, Gordon, Bredno, Joerg, Klochendler, Agnes, Fox-Fisher, Ilana, Shabi-Porat, Sapir, Hecht, Merav, Pelet, Tsuria et al. · 2023 · Nature
24. Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes
    Samuel O. Oyola, Thomas D. Otto, Yong Gu, Gareth Ll. Maslen, Magnus Manske, Susana G. Campino, Dann Turner, Bronwyn L. MacInnis, Dominic P. Kwiatkowski, Harold Swerdlow et al. · 2012 · BMC Genomics
25. Strong signatures of selection in the domestic pig genome
    Rubin, Carl-Johan, Megens, Hendrik-Jan, Barrio, Alvaro Martinez, Maqbool, Khurram, Sayyab, Shumaila, Schwochow, Doreen, Wang, Chao, Carlborg, Örjan, Jern, Patric, Jørgensen, Claus B. et al. · 2012 · Proceedings of the National Academy of Sciences
26. Exome sequencing identifies rare LDLR and APOA5 alleles conferring risk for myocardial infarction
    Do, Ron, Stitziel, Nathan O., Won, Hong-Hee, Jørgensen, Anders Berg, Duga, Stefano, Angelica Merlini, Pier, Kiezun, Adam, Farrall, Martin, Goel, Anuj, Zuk, Or et al. · 2015 · Nature
27. Kinase fusions are frequent in Spitz tumours and spitzoid melanomas
    Thomas Wiesner, Jie He, Roman Yelensky, Rosaura Esteve‐Puig, Thomas Botton, Iwei Yeh, Doron Lipson, Geoff A. Otto, Kristina W. Brennan, Rajmohan Murali et al. · 2014 · Nature Communications
28. Emergence of an Extensively Drug-Resistant Salmonella enterica Serovar Typhi Clone Harboring a Promiscuous Plasmid Encoding Resistance to Fluoroquinolones and Third-Generation Cephalosporins
    Elizabeth J. Klemm, Sadia Shakoor, Andrew J. Page, Farah Naz Qamar, Kim Judge, Dania Khalid Saeed, Vanessa Wong, Timothy J. Dallman, Satheesh Nair, Stephen G. Baker et al. · 2018 · mBio
29. Somatic RHOA mutation in angioimmunoblastic T cell lymphoma
    Mamiko Sakata‐Yanagimoto, Terukazu Enami, Kenichi Yoshida, Yuichi Shiraishi, Ryohei Ishii, Yasuyuki Miyake, Hideharu Muto, Naoko Tsuyama, Aiko Sato‐Otsubo, Yusuke Okuno et al. · 2014 · Nature Genetics
30. Atlas of Subcellular RNA Localization Revealed by APEX-Seq
    Furqan M. Fazal, Shuo Han, Kevin R. Parker, Pornchai Kaewsapsak, Jin Xu, Alistair Nicol Boettiger, Howard Y. Chang, Alice Y. Ting · 2019 · Cell
31. Aberrant PD-L1 expression through 3′-UTR disruption in multiple cancers
    Keisuke Kataoka, Yuichi Shiraishi, Yohei Takeda, Seiji Sakata, Misako Matsumoto, Seiji Nagano, Takuya Maeda, Yasunobu Nagata, Akira Kitanaka, Seiya Mizuno et al. · 2016 · Nature
32. Early life dynamics of the human gut virome and bacterial microbiome in infants
    Efrem S. Lim, Yanjiao Zhou, Guoyan Zhao, Irma K. Bauer, Lindsay Droit, I. Malick Ndao, Barbara B. Warner, Phillip I. Tarr, David Wang, Lori R. Holtz · 2015 · Nature Medicine
33. Loss of epigenetic information as a cause of mammalian aging
    Yang, Jae-Hyun, Hayano, Motoshi, Griffin, Patrick T., Amorim, João A., Bonkowski, Michael S., Apostolides, John K., Salfati, Elias L., Blanchette, Marco, Munding, Elizabeth M., Bhakta, Mital et al. · 2023 · Cell
34. Applications of next-generation sequencing to phylogeography and phylogenetics
    John E. McCormack, Sarah M. Hird, Amanda J. Zellmer, Bryan C. Carstens, Robb Thomas Brumfield · 2011 · Molecular Phylogenetics and Evolution
35. ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads
    Martin Hunt, Alison E. Mather, Leonor Sánchez-Busó, Andrew J. Page, Julian Parkhill, Jacqueline A. Keane, Simon R. Harris · 2017 · Microbial Genomics
36. Mutations in kelch-like 3 and cullin 3 cause hypertension and electrolyte abnormalities
    Lynn M. Boyden, Murim Choi, Keith Adam Choate, Carol J. Nelson-Williams, Anita Farhi, Hakan R. Toka, Irina R. Tikhonova, Robert D. Bjornson, Shrikant Mane, Giacomo Colussi et al. · 2012 · Nature
37. SomaticSniper: identification of somatic point mutations in whole genome sequencing data
    David E. Larson, Christopher C. Harris, Ken Chen, Daniel C. Koboldt, Travis E. Abbott, David J. Dooling, Timothy James Ley, Elaine R. Mardis, Richard K. Wilson, Li Ding · 2011 · Bioinformatics
38. Genome-wide evidence for speciation with gene flow in Heliconius butterflies
    Simon H. Martin, Kanchon K. Dasmahapatra, Nicola J. Nadeau, Camilo A. Salazar, James R. Walters, Fraser Simpson, Mark Blaxter, Andrea Manica, James Mallet, Chris D. Jiggins · 2013 · Genome Research
39. Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses
    Stephan Hamperl, Michael J. Bocek, Joshua C. Saldivar, Tomek Swigut, Karlene A. Cimprich · 2017 · Cell
40. Melanoma whole-exome sequencing identifies V600EB-RAF amplification-mediated acquired B-RAF inhibitor resistance
    Hubing Shi, Gatien Moriceau, Xiangju Kong, Mi‐Kyung Lee, Hane Lee, Richard Chikara Koya, Charles Ng, Thinle Chodon, Richard A. Scolyer, Kimberly Brown Dahlman et al. · 2012 · Nature Communications
41. RNA G-quadruplexes cause eIF4A-dependent oncogene translation in cancer
    Wolfe, Andrew L., Singh, Kamini, Zhong, Yi, Drewe, Philipp, Rajasekhar, Vinagolu K., Sanghvi, Viraj R., Mavrakis, Konstantinos J., Jiang, Man, Roderick, Justine E., Van der Meulen, Joni et al. · 2014 · Nature
42. Improved metagenome binning and assembly using deep variational autoencoders
    Jakob Nybo Nissen, Joachim Johansen, Rosa Lundbye Allesøe, Casper Kaae Sønderby, José Juan Almagro Armenteros, Christopher Heje Grønbech, Lars Juhl Jensen, Henrik Bjørn Nielsen, Thomas Nordahl Petersen, Ole Winther et al. · 2021 · Nature Biotechnology
43. Base-resolution models of transcription-factor binding reveal soft motif syntax
    Avsec, Žiga, Weilert, Melanie, Shrikumar, Avanti, Krueger, Sabrina, Alexandari, Amr, Dalal, Khyati, Fropf, Robin, McAnany, Charles, Gagneur, Julien, Kundaje, Anshul et al. · 2021 · Nature Genetics
44. Timing, rates and spectra of human germline mutation
    Raheleh Rahbari, Arthur Wüster, Sarah Lindsay, Robert J. Hardwick, Ludmil B. Alexandrov, Saeed H. Al Turki, Anna F. Dominiczak, Andrew D. Morris, David John Porteous, Blair H. Smith et al. · 2015 · Nature Genetics
45. Mitochondrial double-stranded RNA triggers antiviral signalling in humans
    Dhir, Ashish, Dhir, Somdutta, Borowski, Lukasz S., Jimenez, Laura, Teitell, Michael, Rötig, Agnès, Crow, Yanick J., Rice, Gillian I., Duffy, Darragh, Tamby, Christelle et al. · 2018 · Nature
46. CDK7 Inhibition Suppresses Super-Enhancer-Linked Oncogenic Transcription in MYCN-Driven Cancer
    Edmond Chipumuro, Eugenio Marco, Camilla Laulund Christensen, Nicholas P. Kwiatkowski, Tinghu Zhang, Clark M. Hatheway, Brian J. Abraham, Bandana Sharma, Caleb Matthew Yeung, Abigail B. Altabef et al. · 2014 · Cell
47. Coordinated circRNA Biogenesis and Function with NF90/NF110 in Viral Infection
    Xiang Li, Chu‐Xiao Liu, Wei Xue, Yang Zhang, Shan Jiang, Qing-Fei Yin, Jia Wei, Run-Wen Yao, Li Chun Yang, Ling‐Ling Chen · 2017 · Molecular Cell
48. Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments
    Karkman, Antti, Pärnänen, Katariina, Larsson, D. G. Joakim · 2019 · Nature Communications
49. Inactivation of DNA repair triggers neoantigen generation and impairs tumour growth
    Giovanni Germano, Simona Lamba, Giuseppe Rospo, Ludovic Barault, Alessandro Magrì, Federica Maione, Mariangela Russo, Giovanni Crisafulli, Alice Bartolini, Giulia Lerda et al. · 2017 · Nature
50. Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study
    Timothy M Walker, Thomas Andreas Kohl, Shaheed Vally Omar, Jessica Hedge, Carlos del Ojo Elías, Phelim Bradley, Zamin Iqbal, Silke Feuerriegel, Katherine E. Niehaus, Daniel J. Wilson et al. · 2015 · The Lancet Infectious Diseases
51. Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome
    Derek M. Bickhart, Benjamin D. Rosen, Sergey Koren, Brian L Sayre, Alex R. Hastie, Saki Chan, Joyce Lee, Ernest T. Lam, Ivan Liachko, Shawn T Sullivan et al. · 2017 · Nature Genetics
52. CPGView : A package for visualizing detailed chloroplast genome structures
    Shengyu Liu, Yang Ni, Jingling Li, Xinyi Zhang, Heyu Yang, Haimei Chen, Chang Liu · 2023 · Molecular Ecology Resources
53. Complete genomic and epigenetic maps of human centromeres
    Altemose, Nicolas, Logsdon, Glennis A., Bzikadze, Andrey V., Sidhwani, Pragya, Langley, Sasha A., Caldas, Gina V., Hoyt, Savannah J., Uralsky, Lev, Ryabov, Fedor D., Shew, Colin J. et al. · 2022 · Science
54. PlasFlow: predicting plasmid sequences in metagenomic data using genome signatures
    Paweł Szczepan Krawczyk, Leszek Lipiński, Andrzej Dziembowski · 2017 · Nucleic Acids Research
55. Oncogenic and drug-sensitive NTRK1 rearrangements in lung cancer
    Aria Vaishnavi, Marzia Capelletti, Anh Tuan Le, Severine L. Kako, Mohit Butaney, Dalia Ercan, Sakshi Mahale, Kurtis D. Davies, Dara L. Aisner, Amanda B. Pilling et al. · 2013 · Nature Medicine
56. Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
    Zhi Jiang Zang, Ioana Cutcutache, Song Ling Poon, Shen Li Zhang, John Richard McPherson, Jiong Tao, Vikneswari Rajasegaran, Hong Lee Heng, Niantao Deng, Anna Gan et al. · 2012 · Nature Genetics
57. Integrative Proteomic Characterization of Human Lung Adenocarcinoma
    Jun‐Yu Xu, Chunchao Zhang, Xiang Wang, Linhui Zhai, Yiming Ma, Yousheng Mao, Kun Qian, Changqing Sun, Zhiwei Liu, Shangwen Jiang et al. · 2020 · Cell
58. Dynamic landscape and regulation of RNA editing in mammals
    Meng How Tan, Qin Li, Raghuvaran Shanmugam, Robert Piskol, Jennefer N. Kohler, Amy N. Young, Kaiwen Ivy Liu, Rui Zhang, Gokul Ramaswami, Kentaro Ariyoshi et al. · 2017 · Nature
59. DNA analysis of an early modern human from Tianyuan Cave, China
    Fu, Qiaomei, Meyer, Matthias, Gao, Xing, Stenzel, Udo, Burbano, Hernán A., Kelso, Janet, Pääbo, Svante · 2013 · Proceedings of the National Academy of Sciences
60. Codon Usage Influences the Local Rate of Translation Elongation to Regulate Co-translational Protein Folding
    Chien‐Hung Yu, Yunkun Dang, Zhipeng Zhou, Cheng Wu, Fangzhou Zhao, Matthew S. Sachs, Yi Liu · 2015 · Molecular Cell
61. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons
    Ingo Braasch, Andrew R. Gehrke, Jeramiah J. Smith, Kazuhiko Kawasaki, Tereza Manousaki, Jérémy Pasquier, Angel Amores, Thomas Desvignes, Peter Batzel, Julian Catchen et al. · 2016 · Nature Genetics
62. FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads
    Haibin Xu, Xiang Luo, Jun Qian, Xiaohui Pang, Jingyuan Song, Guang‐Rui Qian, Jinhui Chen, Shilin Chen · 2012 · PLoS ONE
63. Tissue-resident macrophages provide a pro-tumorigenic niche to early NSCLC cells
    María Casanova-Acebes, Erica Dalla, Andrew M. Leader, Jessica Le Bérichel, Jovan Nikolić, Blanca M. Morales, Markus K. Brown, Christie Chang, Leanna Troncoso, Steven T. Chen et al. · 2021 · Nature
64. Comparative Analysis of Bat Genomes Provides Insight into the Evolution of Flight and Immunity
    Guojie Zhang, Christopher J. Cowled, Zhengli Shi, Zhiyong Huang, Kimberly A. Bishop‐Lilly, Xiaodong Fang, James W. Wynne, Zhiqiang Xiong, Michelle L. Baker, Wei Zhao et al. · 2012 · Science
65. PAX5-driven subtypes of B-progenitor acute lymphoblastic leukemia
    Zhaohui Gu, Michelle L. Churchman, Kathryn G. Roberts, Ian Moore, Xin Zhou, Joy Nakitandwe, Kohei Hagiwara, S. William Pelletier, Sébastien Gingras, Hartmut Berns et al. · 2019 · Nature Genetics
66. A survey of tools for variant analysis of next-generation genome sequencing data
    Stephan Pabinger, Andreas Dander, M. Fischer, René Snajder, Michael Sperk, Mirjana Efremova, Birgit Krabichler, Michael R. Speicher, Johannes Zschocke, Zlatko Trajanoski · 2013 · Briefings in Bioinformatics
67. Analysis of RNA-Seq Data Using TopHat and Cufflinks
    Sreya Ghosh, Chon‐Kit Kenneth Chan · 2015 · Methods in molecular biology
68. Massive expansion of human gut bacteriophage diversity
    Camarillo-Guerrero, Luis F., Almeida, Alexandre, Rangel-Pineros, Guillermo, Finn, Robert D., Lawley, Trevor D. · 2021 · Cell
69. Origins and Genetic Legacy of Neolithic Farmers and Hunter-Gatherers in Europe
    Pontus Skoglund, Helena Malmström, Maanasa Raghavan, Jan Storå, Per N Hall, Eske Willerslev, Marcus Thomas P. Gilbert, Anders Götherström, Mattias Jakobsson · 2012 · Science
70. Nitrogen-fixing populations of Planctomycetes and Proteobacteria are abundant in surface ocean metagenomes
    Tom O. Delmont, Christopher Quince, Alon Shaiber, Özcan C. Esen, Sonny T. M. Lee, Michael S. Rappé, Sandra L. McLellan, Sebastian Lücker, A. Murat Eren · 2018 · Nature Microbiology
71. Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery
    Robert D. Stewart, Marc D. Auffret, Amanda Warr, Alan W. Walker, R. Roehe, Mick Watson · 2019 · Nature Biotechnology
72. Genetic diagnosis of Mendelian disorders via RNA sequencing
    Kremer, Laura S., Bader, Daniel M., Mertes, Christian, Kopajtich, Robert, Pichler, Garwin, Iuso, Arcangela, Haack, Tobias B., Graf, Elisabeth, Schwarzmayr, Thomas, Terrile, Caterina et al. · 2017 · Nature Communications
73. Tissue damage and senescence provide critical signals for cellular reprogramming in vivo
    Mosteiro, Lluc, Pantoja, Cristina, Alcazar, Noelia, Marión, Rosa M., Chondronasiou, Dafni, Rovira, Miguel, Fernandez-Marcos, Pablo J., Muñoz-Martin, Maribel, Blanco-Aparicio, Carmen, Pastor, Joaquin et al. · 2016 · Science
74. Analysis of ESR1 mutation in circulating tumor DNA demonstrates evolution during therapy for metastatic breast cancer
    Gaia Schiavon, Sarah Hrebien, Isaac García-Murillas, Rosalind J. Cutts, Alex Pearson, Noelia Tarazona, Kerry Fenwick, Iwanka Kozarewa, Elena López‐Knowles, Ricardo Ribas et al. · 2015 · Science Translational Medicine
75. Genomic hallmarks of localized, non-indolent prostate cancer
    Michael E. Fraser, Veronica Y. Sabelnykova, Takafumi N. Yamaguchi, Lawrence E. Heisler, Julie M. Livingstone, Vincent Huang, Yu-Jia Shiah, Fouad Yousif, Xihui Lin, Andre P. Masella et al. · 2017 · Nature
76. Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium
    Josephine M. Bryant, Dorothy Grogono, Daniela Rodriguez-Rincon, Isobel Everall, Karen Brown, Pablo A Moreno, Deepshikha Verma, Emily M. Hill, Judith Drijkoningen, Peter H. Gilligan et al. · 2016 · Science
77. Subsistence strategies in traditional societies distinguish gut microbiomes
    Obregon-Tito, Alexandra J., Tito, Raul Y., Metcalf, Jessica, Sankaranarayanan, Krithivasan, Clemente, Jose C., Ursell, Luke K., Zech Xu, Zhenjiang, Van Treuren, Will, Knight, Rob, Gaffney, Patrick M. et al. · 2015 · Nature Communications
78. Structural and functional partitioning of bread wheat chromosome 3B
    Frédéric Choulet, Adriana Alberti, Sébastien Theil, Natasha Glover, Valérie Barbe, Josquin Daron, Lise Pingault, Pierre Sourdille, Arnaud Couloux, Etienne Paux et al. · 2014 · Science
79. The Monarch Butterfly Genome Yields Insights into Long-Distance Migration
    Shuai Zhan, Christine Merlin, Jeffrey L. Boore, Steven M. Reppert · 2011 · Cell
80. Maize HapMap2 identifies extant variation from a genome in flux
    Jer-Ming Chia, Chi Song, Peter J. Bradbury, Denise E. Costich, Natalia de León, John Doebley, Robert J. Elshire, Brandon S. Gaut, Laura Geller, Jeffrey C. Glaubitz et al. · 2012 · Nature Genetics
81. Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
    Hon, Gary C., Hawkins, R. David, Caballero, Otavia L., Lo, Christine, Lister, Ryan, Pelizzola, Mattia, Valsesia, Armand, Ye, Zhen, Kuan, Samantha, Edsall, Lee E. et al. · 2012 · Genome Research
82. Transcriptional Basis of Mouse and Human Dendritic Cell Heterogeneity
    Chrysothemis C. Brown, Herman Gudjonson, Yuri Pritykin, Deeksha Deep, Vincent‐Philippe Lavallée, Alejandra Mendoza, Rachel M. Fromme, Linas Mažutis, Charlotte Eielson Ariyan, Christina S. Leslie et al. · 2019 · Cell
83. Recurrent mutations in the U2AF1 splicing factor in myelodysplastic syndromes
    Timothy Aaron Graubert, Dong Shen, Li Ding, Theresa Okeyo-Owuor, Cara Lunn Shirai, Jin Shao, Kilannin Krysiak, Christopher C Harris, Daniel C. Koboldt, David E. Larson et al. · 2011 · Nature Genetics
84. Quake: quality-aware detection and correction of sequencing errors
    David R. Kelley, Michael C. Schatz, Steven L. Salzberg · 2010 · Genome biology
85. Bayesian inference of ancient human demography from individual genome sequences
    Ilan Gronau, Melissa J. Hubisz, Brad Gulko, Charles G. Danko, Adam C. Siepel · 2011 · Nature Genetics
86. Self-Maintaining Gut Macrophages Are Essential for Intestinal Homeostasis
    Sebastiaan De Schepper, Simon Verheijden, Javier Aguilera‐Lizarraga, Maria Francesca Viola, Werend Boesmans, Nathalie Stakenborg, Iryna Voytyuk, Inga Schmidt, Bram Boeckx, Isabelle Dierckx de Casterlé et al. · 2018 · Cell
87. Improved reference genome of Aedes aegypti informs arbovirus vector control
    Benjamin John Matthews, Olga Dudchenko, Sarah B. Kingan, Sergey Koren, Igor A. Antoshechkin, Jacob E. Crawford, William J. Glassford, Margaret Herre, Seth N. Redmond, Noah H. Rose et al. · 2018 · Nature
88. Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations
    Qin, Peng, Lu, Hongwei, Du, Huilong, Wang, Hao, Chen, Weilan, Chen, Zhuo, He, Qiang, Ou, Shujun, Zhang, Hongyu, Li, Xuanzhao et al. · 2021 · Cell
89. Proteogenomic characterization of pancreatic ductal adenocarcinoma
    Cao, Liwei, Huang, Chen, Cui Zhou, Daniel, Hu, Yingwei, Lih, T. Mamie, Savage, Sara R., Krug, Karsten, Clark, David J., Schnaubelt, Michael, Chen, Lijun et al. · 2021 · Cell
90. PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals
    Robert Kofler, Pablo Orozco‐terWengel, Nicola De Maio, Ram Vinay Pandey, Viola Nolte, Andreas Futschik, Carolin Kosiol, Christian Schlötterer · 2011 · PLoS ONE
91. Genome sequence of mungbean and insights into evolution within Vigna species
    Yang Jae Kang, Sue K. Kim, Moon Young Kim, Puji Lestari, Kil Hyun Kim, Bo‐Keun Ha, Tae Hwan Jun, Won Joo Hwang, Taeyoung Lee, Jayern Lee et al. · 2014 · Nature Communications
92. Tabix: fast retrieval of sequence features from generic TAB-delimited files
    Heng Li · 2011 · Bioinformatics
93. The draft genome and transcriptome of Cannabis sativa.
    van Bakel, Harm, Stout, Jake M, Cote, Atina G, Tallon, Carling M, Sharpe, Andrew G, Hughes, Timothy R, Page, Jonathan E · 2011 · Genome Biology
94. WASP: allele-specific software for robust molecular quantitative trait locus discovery
    van de Geijn, Bryce, McVicker, Graham, Gilad, Yoav, Pritchard, Jonathan K · 2015 · Nature Methods
95. Evolution and epidemic spread of SARS-CoV-2 in Brazil
    Candido, Darlan S., Claro, Ingra M., de Jesus, Jaqueline G., Souza, William M., Moreira, Filipe R. R., Dellicour, Simon, Mellan, Thomas A., du Plessis, Louis, Pereira, Rafael H. M., Sales, Flavia C. S. et al. · 2020 · Science
96. The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection
    Jinghua Yang, Dongyuan Liu, Xiaowu Wang, Changmian Ji, Feng Cheng, Baoning Liu, Zhongyuan Hu, Sheng Chen, Deepak Pental, Youhui Ju et al. · 2016 · Nature Genetics
97. Recent Asian origin of chytrid fungi causing global amphibian declines
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98. The UCSC Genome Browser database: update 2010
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