Cited by 671Genomics and Phylogenetic StudiesGenetics, Bioinformatics, and Biomedical ResearchFractal and DNA sequence analysis

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Tablet-next generation sequence assembly visualization.

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Milne, Iain, Bayer, Micha, Cardle, Linda, Shaw, Paul, Stephen, Gordon, Wright, Frank, Marshall, David·2010·Bioinformatics

DOI 10.1093/bioinformatics/btp666PMC PMC2815658

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Abstract

SUMMARY: Tablet is a lightweight, high-performance graphical viewer for next-generation sequence assemblies and alignments. Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any region of interest, and whole contig overviews and data summaries. Tablet is both multi-core aware and memory efficient, allowing it to handle assemblies containing millions of reads, even on a 32-bit desktop machine. AVAILABILITY: Tablet is freely available for Microsoft Windows, Apple Mac OS X, Linux and Solaris. Fully bundled installers can be downloaded from http://bioinf.scri.ac.uk/tablet in 32- and 64-bit versions.

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The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Genome sequencing in microfabricated high-density picolitre reactors
Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y.-J., Chen, Z., et al. (2005) · Nature · doi:10.1038/nature03959 · Cited by 7,693
Consed: a graphical tool for sequence finishing.Preprint
Gordon, D., Abajian, C., & Green, P. (1998) · Genome Research · doi:10.1101/gr.8.3.195 · Cited by 3,706
EagleView: A genome assembly viewer for next-generation sequencing technologiesPreprint
Huang, W., & Marth, G. (2008) · Genome Research · doi:10.1101/gr.076067.108 · Cited by 125
Hawkeye: an interactive visual analytics tool for genome assemblies
Schatz, M. C., Phillippy, A. M., Shneiderman, B., & Salzberg, S. L. (2007) · Genome biology · doi:10.1186/gb-2007-8-3-r34 · Cited by 91
MapView: visualization of short reads alignment on a desktop computer
Bao, H., Guo, H., Wang, J., Zhou, R., Lu, X., & Shi, S. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp255 · Cited by 79

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Authors: Milne, I., Bayer, M., Cardle, L., Shaw, P., Stephen, G., Wright, F., & Marshall, D.
Affiliations: Biomathematics and Statistics Scotland (GB)
Corresponding author: Marshall, David
ORCID: Milne, Iain
Bayer, Micha
Shaw, Paul
Stephen, Gordon
Wright, Frank
Marshall, David
Venue: Bioinformatics
Publisher: Oxford University Press (OUP)
Published: 2009-12-04
Volume: 26
Issue: 3
Pages: 401-402
ISSN: 1367-4803 (ISSN-L)
1367-4811
DOI: 10.1093/bioinformatics/btp666
PMC: PMC2815658
OpenAlex: W2122270655
Cited by: 666
References: 6
Citations by year: 2026: 9 · 2025: 17 · 2024: 22 · 2023: 23 · 2022: 33 · 2021: 54 · 2020: 33 · 2019: 33 · 2018: 48 · 2017: 39 · 2016: 56 · 2015: 52 · 2014: 46 · 2013: 73 · 2012: 72
FWCI: 16.89
Type: journal article
Language: en
Open access: hybrid
doi.org
Licence: cc-by-nc
creativecommons.org/licenses/by-nc/2.0/uk/ (vor, 2494 d)
Locations: Bioinformatics (publishedVersion, cc-by-nc)
PubMed Central (publishedVersion, cc-by-nc)
PubMed (publishedVersion)
Funders: Scottish Funding Council
Topics: Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genetics, Bioinformatics, and Biomedical Research
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fractal and DNA sequence analysis
Keywords: tablets, next-generation sequencing, genome assembly, sequence alignment, multi-core computing, memory efficiency
MeSH terms: Base Sequence, Software, User-Computer Interface, Sequence Alignment, Sequence Analysis, DNA, Computational Biology, Databases, Genetic

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