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Tablet-next generation sequence assembly visualization.
Open accessAbstract
SUMMARY: Tablet is a lightweight, high-performance graphical viewer for next-generation sequence assemblies and alignments. Supporting a range of input assembly formats, Tablet provides high-quality visualizations showing data in packed or stacked views, allowing instant access and navigation to any region of interest, and whole contig overviews and data summaries. Tablet is both multi-core aware and memory efficient, allowing it to handle assemblies containing millions of reads, even on a 32-bit desktop machine. AVAILABILITY: Tablet is freely available for Microsoft Windows, Apple Mac OS X, Linux and Solaris. Fully bundled installers can be downloaded from http://bioinf.scri.ac.uk/tablet in 32- and 64-bit versions.
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“Moreover, graphical visualization tools such as Tablet [56] may be very valuable for assessing assembly quality [55].”
From Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.] (2012) · cites this paper as [56]
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Metadata
- Authors
- Milne, I., Bayer, M., Cardle, L., Shaw, P., Stephen, G., Wright, F., & Marshall, D.
- Affiliations
- Biomathematics and Statistics Scotland (GB)
- Corresponding author
- Marshall, David
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-12-04
- Volume
- 26
- Issue
- 3
- Pages
- 401-402
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- PMC
- PMC2815658
- OpenAlex
- W2122270655
- Cited by
- 666
- References
- 6
- Citations by year
- 2026: 9 · 2025: 17 · 2024: 22 · 2023: 23 · 2022: 33 · 2021: 54 · 2020: 33 · 2019: 33 · 2018: 48 · 2017: 39 · 2016: 56 · 2015: 52 · 2014: 46 · 2013: 73 · 2012: 72
- FWCI
- 16.89
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Bioinformatics (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Funders
- Scottish Funding Council
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genetics, Bioinformatics, and Biomedical Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fractal and DNA sequence analysis
- Keywords
- tablets, next-generation sequencing, genome assembly, sequence alignment, multi-core computing, memory efficiency
- MeSH terms
- Base Sequence, Software, User-Computer Interface, Sequence Alignment, Sequence Analysis, DNA, Computational Biology, Databases, Genetic
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