featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Cited by (1,224)
Items 1,201–1,224 of 1,224
- Neural precursor cells rescue symptoms of Rett syndrome by activation of the Interferon γ pathwayFrasca, Angelisa, Miramondi, Federica, Butti, Erica, Indrigo, Marzia, Balbontin Arenas, Maria, Postogna, Francesca M, Piffer, Arianna, Bedogni, Francesco, Pizzamiglio, Lara, Cambria, Clara et al. · 2024 · EMBO Molecular Medicine
- PKD1 mutant clones within cirrhotic livers inhibit steatohepatitis without promoting cancerZhu, Min, Wang, Yunguan, Lu, Tianshi, Guo, Jason, Li, Lin, Hsieh, Meng-Hsiung, Gopal, Purva, Han, Yi, Fujiwara, Naoto, Wallace, Darren P. et al. · 2024 · Cell Metabolism
- Pervasive transcription of the mitochondrial genome in Candida albicans is revealed in mutants lacking the mtEXO RNase complexŁabędzka-Dmoch, Karolina, Kolondra, Adam, Karpińska, Magdalena A., Dębek, Sonia, Grochowska, Joanna, Grochowski, Maciej, Piątkowski, Jakub, Hoang Diu Bui, Thi, Golik, Paweł · 2021 · RNA Biology
- Alzheimer's disease–associated PLCG2 variants alter microglial state and function in human induced pluripotent stem cell–derived microglia‐like cellsBedford, Logan M., Tutrow, Kaylee D., Hooper, Karly, Messenger, Evan J., Hernandez, Melody, Lamb, Bruce T., Meyer, Jason S., Richardson, Timothy I., Bissel, Stephanie J. · 2025 · Alzheimer's & Dementia
- Neurodegenerative disease-associated microRNAs acting as signaling molecules modulate CNS neuron structure and viabilityKumbol, Victor, Ivanov, Andranik, McGurran, Hugo, Schüler, Jutta, Zhai, Yuanyuan, Ludwik, Katarzyna, Hinkelmann, Lukas, Brehm, Mariam, Krüger, Christina, Küchler, Judit et al. · 2025 · Cell Communication and Signaling
- Incidence of microvascular dysfunction is increased in hyperlipidemic mice, reducing cerebral blood flow and impairing remote memoryHernandez Torres, Luis Daniel, Rezende, Flavia, Peschke, Eva, Will, Olga, Hövener, Jan-Bernd, Spiecker, Frauke, Özorhan, Ümit, Lampe, Josephine, Stölting, Ines, Aherrahrou, Zouhair et al. · 2024 · Frontiers in Endocrinology
- Atypical cellular responses mediated by intracellular constitutive active TrkB (NTRK2) kinase domains and a solely intracellular NTRK2-fusion oncogeneGupta, Rohini, Dittmeier, Melanie, Wohlleben, Gisela, Nickl, Vera, Bischler, Thorsten, Luzak, Vanessa, Wegat, Vanessa, Doll, Dennis, Sodmann, Annemarie, Bady, Elena et al. · 2024 · Cancer Gene Therapy
- Mouse and human microglial phenotypes in Alzheimer’s disease are controlled by amyloid plaque phagocytosis through Hif1αGrubman, Alexandra, Choo, Xin Yi, Chew, Gabriel, Ouyang, John F., Sun, Guizhi, Croft, Nathan P., Rossello, Fernando J., Simmons, Rebecca, Buckberry, Sam, Landin, Dulce Vargas et al. · 2019
- The RNA exosome maintains cellular RNA homeostasis by controlling transcript abundance in the brainHigginson, Lauryn A., Wang, Xingjun, He, Kevin, Torstrick, Maggie, Kim, Minhoo, Wijeratne, H.R. Sagara, Runnebohm, Avery M., Benayoun, Bérénice A., MacLean, Adam, Chanfreau, Guillaume F. et al. · 2026 · Cell Reports
- SenCat: Cataloging human cell senescence through multi-omic profiling of multiple senescent primary cell typesAnerillas, Carlos, Altés, Gisela, Gresova, Katarina, Tsitsipatis, Dimitrios, Mazan-Mamczarz, Krystyna, Banarjee, Reema, Cunningham, Ana S.G., Salamini-Montemurri, Martin, Yang, Jen-Hao, Munk, Rachel et al. · 2026 · Molecular Cell
- Establishing the relationship between brain cellular senescence and brain structureLund, Anina N., Kopell, Brian H., Golestani, Negar, Vornholt, Eric, Thompson, Ryan C., Liharska, Lora E., Luo, Yuyang, Cheng, Esther, Park, You Jeong, Fennessy, Brian et al. · 2026 · Cell
- O-GlcNAcylation of FOXK1 orchestrates the E2F pathway and promotes oncogenesisMasclef, Louis, Ahmed, Oumaima, Iannantuono, Nicholas, Gagnon, Jessica, Gushul-Leclaire, Mila, Boulay, Karine, Estavoyer, Benjamin, Echbicheb, Mohamed, Poy, Marty, Ali Boubacar, Kalidou et al. · 2024
- Two-dimensionally cultured functional hepatocytes generated from human induced pluripotent stem cell-derived hepatic organoids for pharmaceutical researchInui, Jumpei, Ueyama-Toba, Yukiko, Imamura, Chiharu, Nagai, Wakana, Asano, Rei, Mizuguchi, Hiroyuki · 2025 · Biomaterials
- A personalized metabolic modelling approach through integrated analysis of RNA-Seq-based genomic variants and gene expression levels in Alzheimer’s diseaseUzuner Odongo, Dilara, İlgün, Atılay, Bozkurt, Fatma Betül, Çakır, Tunahan · 2025 · Communications Biology
- A methoxylated flavone from Artemisia afra kills Mycobacterium tuberculosisKellogg, Joshua J., Alonso, Maria Natalia, Jordan, R. Teal, Xiao, Junpei, Cafiero, Juan Hilario, Bush, Trevor, Towler, Melissa, Weathers, Pamela, Shell, Scarlet S. · 2023
- Network analysis identifies strain-dependent response to tau and tau seeding-associated genesAcri, Dominic J., You, Yanwen, Tate, Mason D., Karahan, Hande, Martinez, Pablo, McCord, Brianne, Sharify, A. Daniel, John, Sutha, Kim, Byungwook, Dabin, Luke C. et al. · 2023 · Journal of Experimental Medicine
- RG motifs promote piRNA-mediated gene silencing in C. elegansWallis, Dylan C, Phillips, Carolyn M · 2025 · Nucleic Acids Research
- Multi-omics reveals changes in astrocyte fatty acid metabolism during early stages of Alzheimer's diseaseZhong, Jie, Li, Manhui, Dai, Ziwei, Wan, Jun · 2025 · Neurochemistry International
- Tuberous sclerosis complex‐1 (TSC1) contributes to selective neuronal vulnerability in Alzheimer's diseaseAdriaanse, Bryan A., Brady, Sinead, Wang, Minghui, Beard, Daniel J., Spencer, Jonathan I., Pansieri, Jonathan, Sutherland, Brad A., Esiri, Margaret M., Buchan, Alastair M., Cader, Zameel et al. · 2023 · Neuropathology and Applied Neurobiology
- Gene Expression Analysis of Yeast Strains with a Nonsense Mutation in the eRF3-Coding Gene Highlights Possible Mechanisms of AdaptationMaksiutenko, Evgeniia M., Barbitoff, Yury A., Danilov, Lavrentii G., Matveenko, Andrew G., Zemlyanko, Olga M., Efremova, Elena P., Moskalenko, Svetlana E., Zhouravleva, Galina A. · 2024 · International Journal of Molecular Sciences
- Cytochrome bc1 Catalytic Subunit Rip1 Modulates Antifungal Tolerance in Candida aurisPhan-Canh, Trinh, Lackner, Michaela, Chauhan, Manju, Zenz, Lisa-Maria, Chauhan, Neeraj, Kuchler, Karl · 2026 · ACS Infectious Diseases
- Mitochondrial retrograde control of transcription evolves with respiratory stress, metabolic adaptation, and virulence in budding yeastsŁabędzka-Dmoch, Karolina, Bui, Thi Hoang Diu, Piątkowski, Jakub, Dilling, Marta, Jagiełło, Paulina, Kabza, Wiktoria, Golik, Paweł · 2026 · Molecular Biology and Evolution
- EXOSC3 G191 Variants Trigger System-Wide Recalibration of RNA Processing MachineryWijeratne, H.R. Sagara, Runnebohm, Avery M., Barron, Monica P., Hampton, Ariana J., Li, Rudong, Peck Justice, Sarah A., Lenceski, Sophia H., Rooney, James D., Smith-Kinnaman, Whitney R., Chang, Gina S. et al. · 2026
- Tetramerisation governs SALL transcription factor function in development and diseaseGiuliani, Sara, Chhatbar, Kashyap, Wear, Martin, Guy, Jacky, Mathieson, Tricia, Burdett, Hayden, George, Lisa, Alston, Grace, Spanos, Christos, McHugh, Toni et al. · 2025 · bioRxiv