featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

Cited by (1,224)

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1. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory
   Kenji Fukushima, Xiaodong Fang, David Alvarez‐Ponce, Huimin Cai, Lorenzo Carretero‐Paulet, Cui Chen, Tien-Hao Chang, Kimberly M. Farr, Tomomichi Fujita, Yuji Hiwatashi et al. · 2017 · Nature Ecology & Evolution
2. Systematic In Vivo Inactivation of Chromatin-Regulating Enzymes Identifies Setd2 as a Potent Tumor Suppressor in Lung Adenocarcinoma
   David M. Walter, Olivia S. Venancio, Elizabeth L. Buza, John W. Tobias, Charuhas G. Deshpande, A. Andrea Gudiel, Caroline Kim-Kiselak, Michelle Cicchini, Travis J. Yates, David M. Feldser · 2017 · Cancer Research
3. Eomes-Dependent Loss of the Co-activating Receptor CD226 Restrains CD8+ T Cell Anti-tumor Functions and Limits the Efficacy of Cancer Immunotherapy
   Marianne Weulersse, Assia Asrir, Andrea Pichler, Lea Lemaitre, Matthias Braun, Nadège Carrié, Marie-Véronique Joubert, Marie Le Moine, Laura Do Souto, Guillaume Gaud et al. · 2020 · Immunity
4. Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment
   Cleber A. Trujillo, Edward S. Rice, Nathan K. Schaefer, Isaac Alexander Chaim, Emily C. Wheeler, Assael A. Madrigal, Justin Buchanan, Sebastian Preißl, Allen Wang, Priscilla Davidson Negraes et al. · 2021 · Science
5. Spatial profiling of early primate gastrulation in utero
   Sophie Bergmann, Christopher A. Penfold, Erin Slatery, Dylan Siriwardena, Charis Drummer, Stephen J. Clark, Stanley E. Strawbridge, Keiko Kishimoto, Alice Vickers, Mukul Tewary et al. · 2022 · Nature
6. Mitochondrial complex I promotes kidney cancer metastasis
   Divya Bezwada, Luigi Perelli, Nicholas P. Lesner, Ling Cai, Bailey Brooks, Zheng Wu, Hieu Vu, Varun Sondhi, Daniel L. Cassidy, Stacy Y. Kasitinon et al. · 2024 · Nature
7. Conversion of antigen-specific effector/memory T cells into Foxp3-expressing T reg cells by inhibition of CDK8/19
   Akamatsu, Masahiko, Mikami, Norihisa, Ohkura, Naganari, Kawakami, Ryoji, Kitagawa, Yohko, Sugimoto, Atsushi, Hirota, Keiji, Nakamura, Naoto, Ujihara, Satoru, Kurosaki, Toshio et al. · 2019 · Science Immunology
8. Single-cell senescence identification reveals senescence heterogeneity, trajectory, and modulators
   Tao, Wanyu, Yu, Zhengqing, Han, Jing-Dong J. · 2024 · Cell Metabolism
9. A Twist2-dependent progenitor cell contributes to adult skeletal muscle
   Ning Liu, Glynnis A. Garry, Stephen Li, Svetlana Bezprozvannaya, Efrain Sanchez‐Ortiz, Beibei Chen, John Michael Shelton, Priscilla Jaichander, Rhonda Bassel‐Duby, Eric N. Olson · 2017 · Nature Cell Biology
10. Reconstitution of the oocyte transcriptional network with transcription factors
    Nobuhiko Hamazaki, Hirohisa Kyogoku, Hiromitsu Araki, Fumihito Miura, Chisako Horikawa, Norio Hamada, So Shimamoto, Orie Hikabe, Kinichi Nakashima, Tomoya S. Kitajima et al. · 2020 · Nature
11. Cell-autonomous inflammation of BRCA1-deficient ovarian cancers drives both tumor-intrinsic immunoreactivity and immune resistance via STING
    Marine Bruand, David Barras, Marco Mina, Eleonora Ghisoni, Matteo Morotti, Evripidis Lanitis, Noémie Fahr, Mathieu Desbuisson, Alizée J Grimm, Hualing Zhang et al. · 2021 · Cell Reports
12. PPARγ is a nexus controlling alternative activation of macrophages via glutamine metabolism
    Victoria L. Nelson, Hoang C.B. Nguyen, Juan Carlos García‐Cañaveras, Erika R. Briggs, Wesley Y. Ho, Joanna R. DiSpirito, Jill M. Marinis, David A. Hill, Mitchell A. Lazar · 2018 · Genes & Development
13. Laquinimod arrests experimental autoimmune encephalomyelitis by activating the aryl hydrocarbon receptor
    Joel Kaye, Victor Piryatinsky, Tal Birnberg, Tal Hingaly, Emanuel Raymond, Rina Kashi, Einat Amit‐Romach, Ignacio S. Caballero, Fadi Towfic, Mark A. Ator et al. · 2016 · Proceedings of the National Academy of Sciences
14. Non-specific degradation of transcripts promotes plasmid clearance during type III-A CRISPR–Cas immunity
    Jakob T. Rostøl, Luciano A. Marraffini · 2019 · Nature Microbiology
15. A myelin-related transcriptomic profile is shared by Pitt–Hopkins syndrome models and human autism spectrum disorder
    BaDoi N. Phan, Joseph F. Bohlen, Brittany A. Davis, Zengyou Ye, Huei-Ying Chen, Brent Mayfield, Srinidhi Rao Sripathy, Stephanie C. Page, Morganne N. Campbell, Hannah Louise Smith et al. · 2020 · Nature Neuroscience
16. ARS2/MAGL signaling in glioblastoma stem cells promotes self-renewal and M2-like polarization of tumor-associated macrophages
    Jinlong Yin, Sung Soo Kim, Eunji Choi, Young Taek Oh, Weiwei Lin, Tae Hoon Kim, Jason K. Sa, Jun Hee Hong, Saewhan Park, Hyung Joon Kwon et al. · 2020 · Nature Communications
17. The harsh microenvironment in early breast cancer selects for a Warburg phenotype
    Mehdi Damaghi, Jeffrey West, Mark Robertson‐Tessi, Liping Xu, Meghan C. Ferrall‐Fairbanks, Paul A. Stewart, Erez Persi, Brooke L. Fridley, Philipp M. Altrock, Robert A. Gatenby et al. · 2021 · Proceedings of the National Academy of Sciences
18. SARS-CoV-2 hijacks folate and one-carbon metabolism for viral replication
    Yuchen Zhang, Rui Guo, Sharon H. Kim, Hardik Shah, Shuting Zhang, Jin Hua Liang, Yīng Fāng, Matteo Gentili, Colin N. O'Leary, Steve J. Elledge et al. · 2021 · Nature Communications
19. Xrn2 accelerates termination by RNA polymerase II, which is underpinned by CPSF73 activity
    Joshua D Eaton, Lee Davidson, David L.V. Bauer, Toyoaki Natsume, Masato T. Kanemaki, Steven West · 2018 · Genes & Development
20. Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ
    Joseph W. Foley, Chunfang Zhu, Philippe Jolivet, Shirley Zhu, Peipei Lu, Michael Joseph Meaney, Robert B. West · 2019 · Genome Research
21. Dendritic cell–derived hepcidin sequesters iron from the microbiota to promote mucosal healing
    Bessman, Nicholas J., Mathieu, Jacques R. R., Renassia, Cyril, Zhou, Lei, Fung, Thomas C., Fernandez, Keith C., Austin, Christine, Moeller, Jesper B., Zumerle, Sara, Louis, Sabine et al. · 2020 · Science
22. Bacterial biofilm under flow: First a physical struggle to stay, then a matter of breathing
    Philippe Thomen, Jérôme Robert, Amaury Monmeyran, Anne‐Florence Bitbol, Carine Douarche, Nelly Henry · 2017 · PLoS ONE
23. Ablation of adipocyte creatine transport impairs thermogenesis and causes diet-induced obesity
    Lawrence Kazak, Janane F. Rahbani, Bożena Samborska, Gina Z. Lu, Mark P. Jedrychowski, Mathieu Lajoie, Song Zhang, LeeAnn Ramsay, Florence Y. Dou, Danielle E. Tenen et al. · 2019 · Nature Metabolism
24. IFN-γ selectively suppresses a subset of TLR4-activated genes and enhancers to potentiate macrophage activation
    Kyuho Kang, Mahesh Bachu, Sung Ho Park, Keunsoo Kang, Seyeon Bae, Kyung‐Hyun Park‐Min, Lionel B. Ivashkiv · 2019 · Nature Communications
25. Landscape of ribosome-engaged transcript isoforms reveals extensive neuronal-cell-class-specific alternative splicing programs
    Elisabetta Furlanis, Lisa Traunmüller, Geoffrey Fucile, Peter Scheiffele · 2019 · Nature Neuroscience
26. Loss of ZnT8 function protects against diabetes by enhanced insulin secretion
    Om Prakash Dwivedi, Mikko Lehtovirta, Benoît Hastoy, Vikash Chandra, Nicole A. J. Krentz, Sandra Kleiner, Deepak Jain, Ann-Marie T. Richard, Fernando Abaitua, Nicola L. Beer et al. · 2019 · Nature Genetics
27. Suprachiasmatic VIP neurons are required for normal circadian rhythmicity and comprised of molecularly distinct subpopulations
    William D. Todd, Anne Venner, Christelle Anaclet, Rebecca Y. Broadhurst, Roberto De Luca, Sathyajit Sai Bandaru, Lindsay Issokson, Lauren M. Hablitz, Olga Cravetchi, Elda Arrigoni et al. · 2020 · Nature Communications
28. Nrf1 promotes heart regeneration and repair by regulating proteostasis and redox balance
    Miao Cui, Ayhan Atmanli, María Gabriela Morales, Wei Hong Tan, Kenian Chen, Xue Xiao, Lin Xu, Ning Liu, Rhonda Bassel‐Duby, Eric N. Olson · 2021 · Nature Communications
29. Cover crop root exudates impact soil microbiome functional trajectories in agricultural soils
    Valerie A. Seitz, Bridget B. McGivern, Mikayla Borton, Jacqueline M. Chaparro, Meagan E. Schipanski, Jessica E. Prenni, Kelly C. Wrighton · 2024 · Microbiome
30. Molecular anatomy of adult mouse leptomeninges
    Pietilä, Riikka, Del Gaudio, Francesca, He, Liqun, Vázquez-Liébanas, Elisa, Vanlandewijck, Michael, Muhl, Lars, Mocci, Giuseppe, Bjørnholm, Katrine D., Lindblad, Caroline, Fletcher-Sandersjöö, Alexander et al. · 2023 · Neuron
31. Single-cell analyses of X Chromosome inactivation dynamics and pluripotency during differentiation
    Chen, Geng, Schell, John Paul, Benitez, Julio Aguila, Petropoulos, Sophie, Yilmaz, Marlene, Reinius, Björn, Alekseenko, Zhanna, Shi, Leming, Hedlund, Eva, Lanner, Fredrik et al. · 2016 · Genome Research
32. Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data
    Ying Sha, John H. Phan, May Dongmei Wang · 2015 · Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)
33. miARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
    Eduardo Andrés‐León, Rocío Núñez‐Torres, Ana Maria Rojas · 2016 · Scientific Reports
34. Metagenomic insight into methanogenic reactors promoting direct interspecies electron transfer via granular activated carbon
    Jeong-Hoon Park, Jong‐Hun Park, Hoon Je Seong, Woo Jun Sul, Kang-Hyun Jin, Hee‐Deung Park · 2018 · Bioresource Technology
35. Mechanisms of Progression of Myeloid Preleukemia to Transformed Myeloid Leukemia in Children with Down Syndrome
    Maurice Labuhn, Kelly Perkins, Sören Matzk, Leila N. Varghese, Catherine Garnett, Elli Papaemmanuil, Marlen Metzner, Alison Kennedy, Vyacheslav S. Amstislavskiy, Thomas Risch et al. · 2019 · Cancer Cell
36. Reconstruction of the Global Neural Crest Gene Regulatory Network In Vivo
    Ruth M. Williams, Ivan Candido-Ferreira, Emmanouela Repapi, Daria Gavriouchkina, Upeka Senanayake, Irving T. C. Ling, Jelena M. Telenius, Stephen Taylor, Jim R. Hughes, Tatjana Sauka‐Spengler · 2019 · Developmental Cell
37. CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma
    Siyuan John Liu, Martina Malatesta, Brian V. Lien, Parna Saha, Shivani S. Thombare, Sung Jun Hong, Leslie Pedraza, Mark Koontz, Kyounghee Seo, Max A. Horlbeck et al. · 2020 · Genome biology
38. RNA is essential for PRC2 chromatin occupancy and function in human pluripotent stem cells
    Yicheng Long, Taeyoung Hwang, Anne R. Gooding, Karen J. Goodrich, John L. Rinn, Thomas R. Cech · 2020 · Nature Genetics
39. Interferon-γ primes macrophages for pathogen ligand-induced killing via a caspase-8 and mitochondrial cell death pathway
    Daniel S. Simpson, Jiyi Pang, Ashley L. Weir, Isabella Y. Kong, Melanie Fritsch, Maryam Rashidi, James P. Cooney, Kathryn C. Davidson, Mary Speir, Tirta Mario Djajawi et al. · 2022 · Immunity
40. Combined mutation in Vhl, Trp53 and Rb1 causes clear cell renal cell carcinoma in mice
    Harlander, Sabine, Schönenberger, Désirée, Toussaint, Nora C, Prummer, Michael, Catalano, Antonella, Brandt, Laura, Moch, Holger, Wild, Peter J, Frew, Ian J · 2017 · Nature Medicine
41. 3D Culture Method for Alzheimer's Disease Modeling Reveals Interleukin-4 Rescues Aβ42-Induced Loss of Human Neural Stem Cell Plasticity
    Papadimitriou, Christos, Celikkaya, Hilal, Cosacak, Mehmet I., Mashkaryan, Violeta, Bray, Laura, Bhattarai, Prabesh, Brandt, Kerstin, Hollak, Heike, Chen, Xin, He, Shuijin et al. · 2018 · Developmental Cell
42. CDK8/19 Mediator kinases potentiate induction of transcription by NFκB
    Mengqian Chen, Jiaxin Liang, Hao Ji, Zhengguan Yang, Serena Altilia, Bing Hu, Adam Schronce, Martina S.J. McDermott, Gary P. Schools, Chang‐Uk Lim et al. · 2017 · Proceedings of the National Academy of Sciences
43. A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity
    Benjamin Schwessinger, Jana Sperschneider, William S. Cuddy, Diana P. Garnica, Marisa E. Miller, Jennifer M. Taylor, Peter N. Dodds, Melania Figueroa, Robert Park, John Paul Rathjen · 2018 · mBio
44. SETD2 alterations impair DNA damage recognition and lead to resistance to chemotherapy in leukemia
    Brenton G. Mar, S. Haihua Chu, Josephine D. Kahn, Andrei V. Krivtsov, Richard P. Koche, Cecilia A. Castellano, Jacob L. Kotlier, Rebecca L. Zon, Marie Ellen McConkey, Jonathan R. Chabon et al. · 2017 · Blood
45. Erythro-myeloid progenitors contribute endothelial cells to blood vessels
    Alice Plein, Alessandro Fantin, Laura Denti, Jeffrey W. Pollard, Christiana Ruhrberg · 2018 · Nature
46. Relaxed Selection Limits Lifespan by Increasing Mutation Load
    Rongfeng Cui, Tania Medeiros, David Willemsen, Leonardo Nicola Martin Iasi, Glen E. Collier, Martin Graef, Martin Reichard, Dario Riccardo Valenzano · 2019 · Cell
47. Wapl repression by Pax5 promotes V gene recombination by Igh loop extrusion
    Louisa Hill, Anja Ebert, Markus Jaritz, Gordana Wutz, Kota Nagasaka, Hiromi Tagoh, Daniela Kostanova‐Poliakova, Karina Schindler, Qiong Sun, Peter Bönelt et al. · 2020 · Nature
48. Adeno-to-squamous transition drives resistance to KRAS inhibition in LKB1 mutant lung cancer
    Tong, Xinyuan, Patel, Ayushi S., Kim, Eejung, Li, Hongjun, Chen, Yueqing, Li, Shuai, Liu, Shengwu, Dilly, Julien, Kapner, Kevin S., Zhang, Ningxia et al. · 2024 · Cancer Cell
49. A Candida auris –specific adhesin, Scf1 , governs surface association, colonization, and virulence
    Santana, Darian J., Anku, Juliet A. E., Zhao, Guolei, Zarnowski, Robert, Johnson, Chad J., Hautau, Haley, Visser, Noelle D., Ibrahim, Ashraf S., Andes, David, Nett, Jeniel E. et al. · 2023 · Science
50. Regulation of Cerebral Cortex Folding by Controlling Neuronal Migration via FLRT Adhesion Molecules
    Daniel del Toro, Tobias Ruff, Erik Ahlm Cederfjäll, Ana Villalba, Gönül Seyit-Bremer, Vı́ctor Borrell, Rüdiger Klein · 2017 · Cell
51. Efficient protein production by yeast requires global tuning of metabolism
    Mingtao Huang, Jichen Bao, Björn M. Hallström, Dina Petranović, Jens Nielsen · 2017 · Nature Communications
52. Human T-bet Governs Innate and Innate-like Adaptive IFN-γ Immunity against Mycobacteria
    Rui Yang, Federico Mele, Lisa Worley, David Langlais, Jérémie Rosain, Ibtihal Benhsaien, Houda Elarabi, Carys A. Croft, Jean‐Marc Doisne, Peng Zhang et al. · 2020 · Cell
53. Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans
    Omar Delannoy-Bruno, Chandni Desai, Arjun S. Raman, Robert Yuzen Chen, Matthew C. Hibberd, Jiye Cheng, Nathan Han, Juan J. Castillo, Garret Couture, Carlito B. Lebrilla et al. · 2021 · Nature
54. CECR2 drives breast cancer metastasis by promoting NF-κB signaling and macrophage-mediated immune suppression
    Meiling Zhang, Zongzhi Z. Liu, Keisuke Aoshima, Wesley L. Cai, Hongyin Sun, Tianrui Xu, Yangyi Zhang, Yongyan An, Jocelyn Fang-Yi Chen, Lok-Hei Chan et al. · 2022 · Science Translational Medicine
55. Altered expression pattern of circular RNAs in primary and metastatic sites of epithelial ovarian carcinoma
    Ikhlak Ahmed, Thasni Karedath, Simeon Andrews, Iman K. Al-Azwani, Yasmin Ali Mohamoud, Denis Querleu, Arash Rafii, Joel A. Malek · 2016 · Oncotarget
56. Identification of quiescent and spatially restricted mammary stem cells that are hormone responsive
    Nai Yang Fu, Anne C. Rios, Bhupinder Pal, Charity W. Law, Paul R. Jamieson, Ruijie Liu, François Vaillant, Felicity C. Jackling, Kevin He Liu, Gordon K. Smyth et al. · 2017 · Nature Cell Biology
57. ADAR2/miR-589-3p axis controls glioblastoma cell migration/invasion
    Valeriana Cesarini, Domenico Alessandro Silvestris, Valentina Tassinari, Sara Tomaselli, Shahar Alon, Eli Eisenberg, Franco Locatelli, Angela Gallo · 2017 · Nucleic Acids Research
58. Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression
    William W. Young Greenwald, He Li, Paola Benaglio, David A. Jakubosky, Hiroko Matsui, Anthony D. Schmitt, Siddarth Selvaraj, Matteo D’Antonio, Agnieszka D’Antonio‐Chronowska, Erin N. Smith et al. · 2019 · Nature Communications
59. Systematic allelic analysis defines the interplay of key pathways in X chromosome inactivation
    Tatyana B. Nesterova, Guifeng Wei, Heather A. Coker, Greta Pintacuda, Joseph S. Bowness, Tianyi Zhang, Mafalda R. Almeida, Bianca Bloechl, Benoît Moindrot, Emma J. Carter et al. · 2019 · Nature Communications
60. Long noncoding RNA SNHG12 integrates a DNA-PK–mediated DNA damage response and vascular senescence
    Stefan Haemmig, Dafeng Yang, Xinghui Sun, Debapria Das, Siavash Ghaffari, Roberto Molinaro, Lei Chen, Yihuan Deng, Dan Freeman, Norman Moullan et al. · 2020 · Science Translational Medicine
61. Single-cell transcriptomics identifies a distinct luminal progenitor cell type in distal prostate invagination tips
    Wangxin Guo, Lin Li, Juan He, Zhuang Liu, Ming Han, Fei Li, Xinyi Xia, Xiaoyu Zhang, Yao Zhu, Wei Yu et al. · 2020 · Nature Genetics
62. Degenerative and regenerative pathways underlying Duchenne muscular dystrophy revealed by single-nucleus RNA sequencing
    Francesco Chemello, Zhaoning Wang, Hui zi Li, John McAnally, Ning Liu, Rhonda Bassel‐Duby, Eric N. Olson · 2020 · Proceedings of the National Academy of Sciences
63. Specific Endothelial Cells Govern Nanoparticle Entry into Solid Tumors
    Benjamin R. Kingston, Zachary Pengju Lin, Ben Ouyang, Presley MacMillan, Jessica Ngai, Abdullah M. Syed, Shrey Sindhwani, Warren C. W. Chan · 2021 · ACS Nano
64. KMT2D regulates specific programs in heart development via histone H3 lysine 4 di-methylation
    SiangYun Ang, Alec Uebersohn, C. Ian Spencer, Yu Huang, Ji‐Eun Lee, Kai Ge, Benoit G. Bruneau · 2016 · Development
65. CRISPR/Cas9 Screens Reveal Epstein-Barr Virus-Transformed B Cell Host Dependency Factors
    Yijie Ma, Michael J. Walsh, Katharina Bernhardt, Camille W. Ashbaugh, Stephen J. Trudeau, Isabelle Y. Ashbaugh, Sizun Jiang, Chang Jiang, Bo Zhao, David E. Root et al. · 2017 · Cell Host & Microbe
66. Adult Neural Stem Cells Are Alerted by Systemic Inflammation through TNF-α Receptor Signaling
    Germán Belenguer, Pere Duart-Abadía, Antonio Jordán‐Pla, Ana Domingo-Muelas, Laura Blasco-Chamarro, Sacri R. Ferrón, José Manuel Morante‐Redolat, Isabel Fariñas · 2020 · Cell stem cell
67. Riboregulation of Enolase 1 activity controls glycolysis and embryonic stem cell differentiation
    Ina Huppertz, Joel I. Perez-Perri, Panagiotis Mantas, Thileepan Sekaran, Thomas Schwarzl, Francesco Russo, Dunja Ferring–Appel, Zuzana Koskova, Lyudmila Dimitrova-Paternoga, Eleni Kafkia et al. · 2022 · Molecular Cell
68. An early ABA-induced stomatal closure, Na+ sequestration in leaf vein and K+ retention in mesophyll confer salt tissue tolerance in Cucurbita species
    Mengliang Niu, Junjun Xie, Chen Chen, Haishun Cao, Jingyu Sun, Qiusheng Kong, Sergey N. Shabala, Lana Shabala, Yuan Huang, Zhilong Bie · 2018 · Journal of Experimental Botany
69. Control of Early B Cell Development by the RNA N6-Methyladenosine Methylation
    Zhong Zheng, Linda Zhang, Xiaolong Cui, Xianbin Yu, Phillip J. Hsu, Ruitu Lyu, Haiyan Tan, Malay Mandal, Michelle H. Zhang, Hui‐Lung Sun et al. · 2020 · Cell Reports
70. Root Exudates Alter the Expression of Diverse Metabolic, Transport, Regulatory, and Stress Response Genes in Rhizosphere Pseudomonas
    Olga V. Mavrodi, Janiece R. McWilliams, Jacob Peter, Anna Berim, Karl A. Hassan, Liam D. H. Elbourne, Melissa K. LeTourneau, David Roger Gang, Ian T. Paulsen, David M. Weller et al. · 2021 · Frontiers in Microbiology
71. Loss of TRIM21 alleviates cardiotoxicity by suppressing ferroptosis induced by the chemotherapeutic agent doxorubicin
    Kai Hou, Jianliang Shen, Junrong Yan, Chuannan Zhai, Jingxia Zhang, Ji-An Pan, Ye Zhang, Yaping Jiang, Yongbo Wang, Richard Z. Lin et al. · 2021 · EBioMedicine
72. A scalable organoid model of human autosomal dominant polycystic kidney disease for disease mechanism and drug discovery
    Tracy Tran, Cheng Jack Song, Trang Thi Thu Nguyen, Shun-Yang Cheng, Jill A. McMahon, Rui Yang, Qiuyu Guo, Bálint Dér, Nils O. Lindström, Daniel Chi-Hong Lin et al. · 2022 · Cell stem cell
73. Radiogenomic Analysis of Oncological Data: A Technical Survey
    Mariarosaria Incoronato, Marco Aiello, Teresa Infante, Carlo Cavaliere, Anna Grimaldi, Peppino Mirabelli, Serena Monti, Marco Salvatore · 2017 · International Journal of Molecular Sciences
74. The transcription factor c-Maf is essential for the commitment of IL-17-producing γδ T cells
    Matthew K. Zuberbuehler, Morgan E. Parker, Joshua D. Wheaton, Jaclyn R. Espinosa, Harmony R. Salzler, Eunchong Park, Maria Ciofani · 2018 · Nature Immunology
75. Phases of Metabolic and Soft Tissue Changes in Months Preceding a Diagnosis of Pancreatic Ductal Adenocarcinoma
    Raghuwansh P. Sah, Ayush Sharma, Sajan Jiv Singh Nagpal, Sri Harsha Patlolla, Anil Kumar Sharma, Harika Kandlakunta, Vincent Anani, Ramcharan Singh Angom, Amrit K. Kamboj, Nazir Ahmed et al. · 2019 · Gastroenterology
76. Using long-read sequencing to detect imprinted DNA methylation
    Scott Gigante, Quentin A. Gouil, Alexis Lucattini, Andrew Keniry, Tamara J Beck, Matthew Tinning, Lavinia Gordon, Chris Woodruff, Terence Paul Speed, Marnie E. Blewitt et al. · 2019 · Nucleic Acids Research
77. Adaptation to mitochondrial stress requires CHOP-directed tuning of ISR
    Sophie Kaspar, Christian Oertlin, Karolina Szczepanowska, Alexandra Kukat, Katharina Senft, Christina Lucas, Susanne Brodesser, Maria Hatzoglou, Ola Segnestam Larsson, Ivan Topisirović et al. · 2021 · Science Advances
78. Tumor-induced erythroid precursor-differentiated myeloid cells mediate immunosuppression and curtail anti-PD-1/PD-L1 treatment efficacy
    Haixia Long, Qingzhu Jia, Liuyang Wang, Wen‐Feng Fang, Zhongyu Wang, Tao Jiang, Fei Zhou, Jin Zheng, Jiani Huang, Li Zhou et al. · 2022 · Cancer Cell
79. Prenatal immune stress blunts microglia reactivity, impairing neurocircuitry
    Lindsay N. Hayes, Kyongman An, Elisa Carloni, Fangze Li, Elizabeth Vincent, Chloë Trippaers, Manish D. Paranjpe, Gül Dölen, Loyal A. Goff, Adriana Ramos et al. · 2022 · Nature
80. EZH2 inhibition remodels the inflammatory senescence-associated secretory phenotype to potentiate pancreatic cancer immune surveillance
    Loretah Chibaya, Katherine C. Murphy, Kelly D. DeMarco, Sneha Gopalan, Haibo Liu, Chaitanya Naimesh Parikh, Yvette Lopez-Diaz, Melissa Faulkner, Junhui Li, John P. Morris et al. · 2023 · Nature Cancer
81. The tissue-resident regulatory T cell pool is shaped by transient multi-tissue migration and a conserved residency program
    Oliver T. Burton, Orian Bricard, Samar Hayat Khan Tareen, Václav Gergelits, Simon Andrews, Laura Biggins, Carlos P. Roca, Carly E. Whyte, Steffie Junius, Aleksandra Brajic et al. · 2024 · Immunity
82. Commensal consortia decolonize Enterobacteriaceae via ecological control
    Munehiro Furuichi, Takaaki Kawaguchi, Marie‐Madlen Pust, Keiko Yasuma-Mitobe, Damian Rafal Plichta, Naomi Hasegawa, Takashi Ohya, Shakti K. Bhattarai, Satoshi Sasajima, Yoshimasa Aoto et al. · 2024 · Nature
83. TAp73 is a central transcriptional regulator of airway multiciliogenesis
    Alice Nemajerová, Daniela Kramer, Saul S. Siller, Christian Herr, Orr Shomroni, Tonatiuh Peña, Cristina Gallinas Suazo, Katharina M. Glaser, Merit Wildung, Henrik Steffen et al. · 2016 · Genes & Development
84. Human brown adipose tissue is phenocopied by classical brown adipose tissue in physiologically humanized mice
    de Jong, Jasper M. A., Sun, Wenfei, Pires, Nuno D., Frontini, Andrea, Balaz, Miroslav, Jespersen, Naja Z., Feizi, Amir, Petrovic, Katarina, Fischer, Alexander W., Bokhari, Muhammad Hamza et al. · 2019 · Nature Metabolism
85. Acute sleep loss results in tissue-specific alterations in genome-wide DNA methylation state and metabolic fuel utilization in humans
    Cedernaes, Jonathan, Schönke, Milena, Westholm, Jakub Orzechowski, Mi, Jia, Chibalin, Alexander, Voisin, Sarah, Osler, Megan, Vogel, Heike, Hörnaeus, Katarina, Dickson, Suzanne L. et al. · 2018 · Science Advances
86. Systematic Discovery of RNA Binding Proteins that Regulate MicroRNA Levels
    Julia K. Nussbacher, Gene Wei-Ming Yeo · 2018 · Molecular Cell
87. KMT2C mediates the estrogen dependence of breast cancer through regulation of ERα enhancer function
    Kinisha P. Gala, Qing Li, Amit Sinha, Pedram Razavi, Madeline A. Dorso, Francisco Sánchez-Vega, Young Rock Chung, Ronald C. Hendrickson, James J.-D. Hsieh, Michael F. Berger et al. · 2018 · Oncogene
88. Identification of Candidate HY5-Dependent and -Independent Regulators of Anthocyanin Biosynthesis in Tomato
    Zhengkun Qiu, Haijing Wang, Dongjing Li, Bingwei Yu, Qiuling Hui, Shuangshuang Yan, Zejun Huang, Xia Cui, Bihao Cao · 2018 · Plant and Cell Physiology
89. POWERDRESS-mediated histone deacetylation is essential for thermomorphogenesis in Arabidopsis thaliana
    Céline Tasset, Avilash Singh Yadav, Sridevi Sureshkumar, Rupali Singh, Lennard van der Woude, Maxim Nekrasov, David John Tremethick, Martijn van Zanten, Sureshkumar Balasubramanian · 2018 · PLoS Genetics
90. Next-generation unnatural monosaccharides reveal that ESRRB O-GlcNAcylation regulates pluripotency of mouse embryonic stem cells
    Yi Hao, Xinqi Fan, Yujie Shi, Che Zhang, De‐en Sun, Ke Qin, Wei Qin, Wen Zhou, Xing Chen · 2019 · Nature Communications
91. Circulating Tumor Cells Exhibit Metastatic Tropism and Reveal Brain Metastasis Drivers
    Remi V. Klotz, Amal Thomas, Teng Teng, Sung Min Han, Oihana Iriondo, Lin Li, Sara Restrepo-Vassalli, Alan Wang, Negeen Izadian, Matthew J. MacKay et al. · 2019 · Cancer Discovery
92. Chronic type I interferon signaling promotes lipid-peroxidation-driven terminal CD8+ T cell exhaustion and curtails anti-PD-1 efficacy
    Weixin Chen, Jia Ming Nickolas Teo, Siu Wah Yau, Melody Yee‐Man Wong, Chun‐Nam Lok, Chi‐Ming Che, Asif Javed, Yuanhua Huang, Stephanie Ma, Guang Sheng Ling · 2022 · Cell Reports
93. Highly efficient and rapid generation of human pluripotent stem cells by chemical reprogramming.
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