Bayesian joint analysis of heterogeneous genomics data

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An HDP-HMM for systems with state persistence

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Integrated analysis of DNA methylation and gene expression reveals specific signaling pathways associated with platinum resistance in ovarian cancer

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Infinite Latent Feature Models and the Indian Buffet Process

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Patterns of chromosomal imbalances defines subgroups of breast cancer with distinct clinical features and prognosis. A study of 305 tumors by comparative genomic hybridization.

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Statistical Methods for Expression Quantitative Trait Loci (eQTL) Mapping

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iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data

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Functional Interaction between Responses to Lactic Acidosis and Hypoxia Regulates Genomic Transcriptional Outputs

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Complex nature of SNP genotype effects on gene expression in primary human leucocytes

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I/NI-calls for the exclusion of non-informative genes: a highly effective filtering tool for microarray data

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Sparse Probabilistic Projections

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Relationship of XIST expression and responses of ovarian cancer to chemotherapy.

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CNAmet: an R package for integrating copy number, methylation and expression data

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An Alternative Infinite Mixture Of Gaussian Process Experts

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Five genes from chromosomal band 8p22 are significantly down‐regulated in ovarian carcinoma

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Copy number variant in the candidate tumor suppressor gene MTUS1 and familial breast cancer risk

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Misbehaviour of XIST RNA in Breast Cancer Cells

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Probabilistic approach to detecting dependencies between data sets

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Expression of EBAG9/RCAS1 is associated with advanced disease in human epithelial ovarian cancer

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Latent Factor Analysis to Discover Pathway-Associated Putative Segmental Aneuploidies in Human Cancers

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E2F5 status significantly improves malignancy diagnosis of epithelial ovarian cancer

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Isolation and Characterization of Vascular Smooth Muscle Cell Growth Promoting Factor from Bovine Ovarian Follicular Fluid and Its cDNA Cloning from Bovine and Human Ovary

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Predicting Viral Infection From High-Dimensional Biomarker Trajectories

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VSGP/F-Spondin: A New Ovarian Cancer Marker

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Aneuploidy in Health and Disease

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Sticky Hidden Markov Modeling of Comparative Genomic Hybridization

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An empirical Bayes model for gene expression and methylation profiles in antiestrogen resistant breast cancer

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A Bayesian graphical model for integrative analysis of TCGA data

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Statistics: A Key to Innovation in a Data-Centric World!

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Hierarchical Bayesian methods for integration of various types of genomics data

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Non-parametric Bayesian modeling and fusion of spatio-temporal information sources

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Uncover Cancer Genomics by Jointly Analysing Aneuploidy and Gene Expression

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Multi-omics Data Integration, Interpretation, and Its Application

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Using machine learning approaches for multi-omics data analysis: A review

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More Is Better: Recent Progress in Multi-Omics Data Integration Methods

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Machine learning for integrating data in biology and medicine: principles, practice, and opportunities

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Data Fusion and IoT for Smart Ubiquitous Environments: A Survey

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Bayesian consensus clustering

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Integrated Multi-Omics Analyses in Oncology: A Review of Machine Learning Methods and Tools

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Multi-omics data integration considerations and study design for biological systems and disease

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Integrative methods for analyzing big data in precision medicine

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A Selective Review of Multi-Level Omics Data Integration Using Variable Selection

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Group Component Analysis for Multiblock Data: Common and Individual Feature Extraction

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An Integrated Multi-Omics and Artificial Intelligence Framework for Advance Plant Phenotyping in Horticulture

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Unsupervised Multi-Omics Data Integration Methods: A Comprehensive Review

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Group Factor Analysis

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Common and distinct components in data fusion

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Angle-based joint and individual variation explained

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Machine learning: its challenges and opportunities in plant system biology

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R.JIVE for exploration of multi-source molecular data

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Structural Learning and Integrative Decomposition of Multi-View Data

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Genetic heterogeneity: Challenges, impacts, and methods through an associative lens

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From systems biology to P4 medicine: applications in respiratory medicine

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Advance computational tools for multiomics data learning

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Machine learning-based analysis of multi-omics data on the cloud for investigating gene regulations

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Bayesian group factor analysis with structured sparsity.

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Graph- and rule-based learning algorithms: a comprehensive review of their applications for cancer type classification and prognosis using genomic data

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Module Analysis Captures Pancancer Genetically and Epigenetically Deregulated Cancer Driver Genes for Smoking and Antiviral Response

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Multi-Omics Approaches to Improve Mitochondrial Disease Diagnosis: Challenges, Advances, and Perspectives

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Integrative clustering of high-dimensional data with joint and individual clusters

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A Detailed Catalogue of Multi-Omics Methodologies for Identification of Putative Biomarkers and Causal Molecular Networks in Translational Cancer Research

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Role of Artificial Intelligence in Drug Discovery and Target Identification in Cancer

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Developing a ‘personalome’ for precision medicine: emerging methods that compute interpretable effect sizes from single-subject transcriptomes

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Prediction With Dimension Reduction of Multiple Molecular Data Sources for Patient Survival

Kaplan, A. N., & Lock, E. F. (2017) · Cancer Informatics · doi:10.1177/1176935117718517 · Cited by 31 · see citing works

Incorporating Covariates Into Integrated Factor Analysis of Multi-View Data

Li, G., & Jung, S. (2017) · Biometrics · doi:10.1111/biom.12698 · Cited by 30 · see citing works

Generalized integrative principal component analysis for multi-type data with block-wise missing structure

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Integrative omics - from data to biology

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Patient-Specific Multi-Omics Models and the Application in Personalized Combination Therapy

John, A. J., Qin, B., Kalari, K. R., Wang, L., & Yu, J. (2020) · Future Oncology · doi:10.2217/fon-2020-0119 · Cited by 27 · see citing works

Clustering Longitudinal Data: A Review of Methods and Software Packages

Lu, Z. (2024) · International Statistical Review · doi:10.1111/insr.12588 · Cited by 23 · see citing works

Integrative Analyses of Cancer Data: A Review from a Statistical Perspective

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Radiomic and radiogenomic modeling for radiotherapy: strategies, pitfalls, and challenges

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Multimodal Data Fusion in High-Dimensional Heterogeneous Datasets Via Generative Models

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Computational approaches leveraging integrated connections of multi-omic data toward clinical applications

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Review of prostate cancer genomic studies in Africa

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Integrating hypertension phenotype and genotype with hybrid non-negative matrix factorization

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DSP based entropy estimation for identification and classification of Homo sapiens cancer genes

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DIFFERENT GENOMIC SIGNAL PROCESSING METHODS FOR EUKARYOTIC GENE PREDICTION: A SYSTEMATIC REVIEW

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Integrating hypertension phenotype and genotype with hybrid non-negative matrix factorization

Luo, Y., Mao, C., Yang, Y., Wang, F., Ahmad, F. S., Arnett, D. K., Irvin, M. R., & Shah, S. J. (2018) · Bioinformatics · doi:10.1093/bioinformatics/bty804 · Cited by 12 · see citing works

Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies

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From Silos to Synthesis: A comprehensive review of domain adaptation strategies for multi-source data integration in healthcare

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Integration of Multimodal Data from Disparate Sources for Identifying Disease Subtypes

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Bayesian multitask learning regression for heterogeneous patient cohorts

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Multi-Omics Data Mining Techniques: Algorithms and Software

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Integrative Analysis of Multi-Omics Data

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An Integrated Patient Genomic Information Management and Analysis System for Healthcare Professionals

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Machine Learning Meets Big Data: An Overview of Diagnostic and Prognostic Prediction for Cancer

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Integrative Analyses for Multi-source Data with Multiple Shared Dimensions

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Angle-Based Joint and Individual Variation ExplainedPreprint

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Applications of Computational Systems Biology in Cancer Signaling Pathways

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A non-parametric Bayesian joint model for latent individual molecular profiles and survival in oncology

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Bayesian meta-analysis models for heterogeneous genomics data

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A Joint Bayesian Boolean Matrix Factorization with Application to Chromosomal Copy Number Alterations in Multiple MyelomaPreprint

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Bayesian combinatorial MultiStudy factor analysis

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