The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.
Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series
Open accessAbstract
Motivation: The widespread adoption of RNA-seq to quantitatively measure gene expression has increased the scope of sequencing experimental designs to include time-course experiments. maSigPro is an R package specifically suited for the analysis of time-course gene expression data, which was developed originally for microarrays and hence was limited in its application to count data. Results: We have updated maSigPro to support RNA-seq time series analysis by introducing generalized linear models in the algorithm to support the modeling of count data while maintaining the traditional functionalities of the package. We show a good performance of the maSigPro-GLM method in several simulated time-course scenarios and in a real experimental dataset. Availability and implementation: The package is freely available under the LGPL license from the Bioconductor Web site ( http://bioconductor.org ). Contact: mj.nueda@ua.es or aconesa@cipf.es
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Self-citationStreaming fragment assignment for real-time analysis of sequencing experiments
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Kip, A. M., Soons, Z., Mohren, R., Duivenvoorden, A. A. M., Röth, A. A. J., Cillero-Pastor, B., Neumann, U. P., Dejong, C. H. C., Heeren, R. M. A., Olde Damink, S. W. M., et al. (2021) · Cell Death & Disease · doi:10.1038/s41419-020-03379-9 · Cited by 55
Metadata
- Authors
- Nueda, M. J., Tarazona, S., & Conesa, A.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2014-06-03
- Volume
- 30
- Issue
- 18
- Pages
- 2598-2602
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2142433339
- Cited by
- 348
- References
- 7
- FWCI
- 4.99
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Nueda, M. J., Tarazona, S., & Conesa, A. (2014). Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series. Bioinformatics. https://doi.org/10.1093/bioinformatics/btu333
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