Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome: gene content and organization
Abstract
The entire genome of the unicellular cyanobacterium Synechococcus elongatus PCC 6301 (formerly Anacystis nidulans Berkeley strain 6301) was sequenced. The genome consisted of a circular chromosome 2,696,255 bp long. A total of 2,525 potential protein-coding genes, two sets of rRNA genes, 45 tRNA genes representing 42 tRNA species, and several genes for small stable RNAs were assigned to the chromosome by similarity searches and computer predictions. The translated products of 56% of the potential protein-coding genes showed sequence similarities to experimentally identified and predicted proteins of known function, and the products of 35% of the genes showed sequence similarities to the translated products of hypothetical genes. The remaining 9% of genes lacked significant similarities to genes for predicted proteins in the public DNA databases. Some 139 genes coding for photosynthesis-related components were identified. Thirty-seven genes for two-component signal transduction systems were also identified. This is the smallest number of such genes identified in cyanobacteria, except for marine cyanobacteria, suggesting that only simple signal transduction systems are found in this strain. The gene arrangement and nucleotide sequence of Synechococcus elongatus PCC 6301 were nearly identical to those of a closely related strain Synechococcus elongatus PCC 7942, except for the presence of a 188.6 kb inversion. The sequences as well as the gene information shown in this paper are available in the Web database, CYORF (http://www.cyano.genome.jp/).
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The 188-kb inversion between S. elongates PCC 6301 and PCC 7942 was flanked by a pair of 0.5-kb LIRs with >81% identities in both strains.
“Likewise, the 188-kb inversion between S . elongates PCC 6301 and PCC 7942 was also flanked by a pair of 0.5-kb LIRs with >81% identities in both strains.47”
From Whole genomic DNA sequencing and comparative genomic analysis of<i>Arthrospira platensis</i>: high genome plasticity and genetic diversity (2016) · cites this paper as [47]
An inverted 1.3-Mb fragment was detected between Cyanothece sp. PCC 8801 and PCC 8802, and a 188-kb inversion was identified between Synechococcus elongates PCC 6301 and PCC 7942 chromosome.
“For instance, an inverted 1.3-Mb fragment was detected between Cyanothece sp. PCC 8801 and PCC 8802, and a 188-kb inversion was identified between Synechococcus elongates PCC 6301 and PCC 7942 chromosome.47 , 48”
From Whole genomic DNA sequencing and comparative genomic analysis of<i>Arthrospira platensis</i>: high genome plasticity and genetic diversity (2016) · cites this paper as [47]
Chromosomal inversions have been frequently identified in other closely related cyanobacterial strains.
“Chromosomal inversions have been frequently identified in other closely related cyanobacterial strains.”
From Whole genomic DNA sequencing and comparative genomic analysis of<i>Arthrospira platensis</i>: high genome plasticity and genetic diversity (2016) · cites this paper as [47]
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302 · see citing works
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Lowe, T. M., & Eddy, S. R. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.5.955 · Cited by 11,120 · see citing works
Kaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., et al. (1996) · DNA Research · doi:10.1093/dnares/3.3.185 · Cited by 2,434 · see citing works
Self-citationKaneko, T., Sato, S., Kotani, H., Tanaka, A., Asamizu, E., Nakamura, Y., Miyajima, N., Hirosawa, M., Sugiura, M., Sasamoto, S., et al. (1996) · DNA Research · doi:10.1093/dnares/3.3.109 · Cited by 2,132 · see citing works
Self-citationThe Molecular Biology of Cyanobacteria
(1994) · Springer eBooks · doi:10.1007/978-94-011-0227-8 · Cited by 1,429 · see citing works
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
Rocap, G., Larimer, F. W., Lamerdin, J. E., Malfatti, S., Chain, P., Ahlgren, N. A., Arellano, A., Coleman, M. L., Hauser, L., Hess, W. R., et al. (2003) · Nature · doi:10.1038/nature01947 · Cited by 1,205 · see citing works
Expression of a Gene Cluster kaiABC as a Circadian Feedback Process in Cyanobacteria
Ishiura, M., Kutsuna, S., Aoki, S., Iwasaki, H., Andersson, C. R., Tanabe, A., Golden, S. S., Johnson, C. H., & Kondo, T. (1998) · Science · doi:10.1126/science.281.5382.1519 · Cited by 760 · see citing works
Kaneko, T. (2001) · DNA Research · doi:10.1093/dnares/8.5.205 · Cited by 696 · see citing works
The genome of a motile marine Synechococcus
Palenik, B. P., Brahamsha, B., Larimer, F. W., Land, M., Hauser, L., Chain, P., Lamerdin, J. E., Regala, W., Allen, E. E., McCarren, J., et al. (2003) · Nature · doi:10.1038/nature01943 · Cited by 657 · see citing works
Dufresne, A., Salanoubat, M., Partensky, F., Artiguenave, F., Axmann, I. M. I., Barbe, V., Duprat, S., Galperin, M. Y., Koonin, E. V., Gall, F. L., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1733211100 · Cited by 469 · see citing works
Complete Genome Structure of the Thermophilic Cyanobacterium Thermosynechococcus elongatus BP-1
Nakamura, Y. (2002) · DNA Research · doi:10.1093/dnares/9.4.123 · Cited by 352 · see citing works
CikA, a Bacteriophytochrome That Resets the Cyanobacterial Circadian Clock
Schmitz, O., Katayama, M., Williams, S. B., Kondo, T., & Golden, S. S. (2000) · Science · doi:10.1126/science.289.5480.765 · Cited by 312 · see citing works
Complete Genome Structure of Gloeobacter violaceus PCC 7421, a Cyanobacterium that Lacks Thylakoids
Nakamura, Y. (2003) · DNA Research · doi:10.1093/dnares/10.4.137 · Cited by 292 · see citing works
An overview of the genome of Nostoc punctiforme, a multicellular, symbiotic cyanobacterium
Meeks, J. C., Elhai, J., Thiel, T., Potts, M., Larimer, F. W., Lamerdin, J. E., Predki, P. F., & Atlas, R. (2001) · Photosynthesis Research · doi:10.1023/a:1013840025518 · Cited by 285 · see citing works
Iwasaki, H., Williams, S. B., Kitayama, Y., Ishiura, M., Golden, S. S., & Kondo, T. (2000) · Cell · doi:10.1016/s0092-8674(00)80832-6 · Cited by 274 · see citing works
Genome sequence of Synechococcus CC9311: Insights into adaptation to a coastal environment
Palenik, B. P., Ren, Q., Dupont, C. L., Myers, G. S. A., Heidelberg, J. F., Badger, J. H., Madupu, R., Nelson, W. C., Brinkac, L. M., Dodson, R. J., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602963103 · Cited by 266 · see citing works
Takai, N., Nakajima, M., Oyama, T., Kito, R., Sugita, C., Sugita, M., Kondo, T., & Iwasaki, H. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0602955103 · Cited by 241 · see citing works
Self-citationEvidence for genetic transformation in blue-green alga Anacystis nidulans
Shestakov, S. V., & Khyen, N. T. (1970) · Molecular and General Genetics MGG · doi:10.1007/bf00441199 · Cited by 208 · see citing works
The cultivation of myxophyceae
Allen, M. B. (1952) · Archives of Microbiology · doi:10.1007/bf00410816 · Cited by 184 · see citing works
Tomioka, N., & Sugiura, M. (1983) · Molecular and General Genetics MGG · doi:10.1007/bf00330888 · Cited by 170 · see citing works
Self-citationSchwarz, R., & Grossman, A. R. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.18.11008 · Cited by 165 · see citing works
van Waasbergen, L. G., Dolganov, N. A., & Grossman, A. R. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.9.2481-2490.2002 · Cited by 152 · see citing works
Mizuno, T. (1996) · DNA Research · doi:10.1093/dnares/3.6.407 · Cited by 145 · see citing works
High-Throughput Functional Analysis of the Synechococcus elongatus PCC 7942 Genome
Holtman, C. K. (2005) · DNA Research · doi:10.1093/dnares/12.2.103 · Cited by 121 · see citing works
Tomioka, N., Shinozaki, K., & Sugiura, M. (1981) · Molecular and General Genetics MGG · doi:10.1007/bf00352505 · Cited by 92 · see citing works
Self-citationGupta, A., Morby, A. P., Turner, J. S., Whitton, B. A., & Robinson, N. J. (1993) · Molecular Microbiology · doi:10.1111/j.1365-2958.1993.tb01110.x · Cited by 82 · see citing works
Origin and evolution of group I introns in cyanobacterial tRNA genes
Paquin, B., Kathe, S. D., Nierzwicki‐Bauer, S. A., & Shub, D. A. (1997) · Journal of Bacteriology · doi:10.1128/jb.179.21.6798-6806.1997 · Cited by 79 · see citing works
Aiba, H., Nagaya, M., & Mizuno, T. (1993) · Molecular Microbiology · doi:10.1111/j.1365-2958.1993.tb01205.x · Cited by 78 · see citing works
Genetic relationship of two highly studied Synechococcus strains designated Anacystis nidulans
Golden, S. S., Nalty, M. S., & Cho, D. S. (1989) · Journal of Bacteriology · doi:10.1128/jb.171.1.24-29.1989 · Cited by 73 · see citing works
The complete nucleotide sequence of a 23S rRNA gene from a blue-green alga, Anacystis nidulans
Kumano, M., Tomioka, N., & Sugiura, M. (1983) · Gene · doi:10.1016/0378-1119(83)90082-3 · Cited by 66 · see citing works
Self-citationMiller, B., Heuser, T., & Zimmer, W. (2000) · FEBS Letters · doi:10.1016/s0014-5793(00)02014-7 · Cited by 59 · see citing works
Lau, R. H., Sapienza, C., & Doolittle, W. F. (1980) · Molecular and General Genetics MGG · doi:10.1007/bf00267230 · Cited by 59 · see citing works
Goto, A., Shirokane, M., Masuda, S., Tanaka, K., & Takahashi, H. (1999) · Molecular Microbiology · doi:10.1046/j.1365-2958.1999.01608.x · Cited by 53 · see citing works
A novel small stable RNA, 6Sa RNA, from the cyanobacterium Synechococcus sp. strain PCC6301
Watanabe, T., Sugiura, M., & Sugita, M. (1997) · FEBS Letters · doi:10.1016/s0014-5793(97)01237-4 · Cited by 41 · see citing works
Self-citationSequence of the ribonuclease P RNA gene from the cyanobacteriumAnacystis nidulans
Banta, A. B., Haas, E. S., Brown, J. W., & Pace, N. R. (1992) · Nucleic Acids Research · doi:10.1093/nar/20.4.911 · Cited by 34 · see citing works
Physical and gene maps of the unicellular cyanobacterium Synechococcus sp. strain PCC6301 genome
Kaneko, T., Matsubayashi, T., Sugita, M., & 杉浦, 昌. (1996) · Plant Molecular Biology · doi:10.1007/bf00020621 · Cited by 34 · see citing works
Self-citationMasahiro, N., Aiba, H., & Mizuno, T. (1993) · Gene · doi:10.1016/0378-1119(93)90679-w · Cited by 30 · see citing works
van der Plas, J., Teertstra, R., Borrias, M., & Weisbeek, P. J. (1992) · Molecular Microbiology · doi:10.1111/j.1365-2958.1992.tb01513.x · Cited by 29 · see citing works
Watanabe, T., Sugita, M., & Sugiura, M. (1998) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(97)00180-2 · Cited by 27 · see citing works
Self-citationRebière, M.-C., Anne-Marie-Castets, Houmard, J., & de Marsac, N. T. (1986) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1986.tb01807.x · Cited by 26 · see citing works
Thomas, C., Andersson, C. R., Canales, S. R., & Golden, S. S. (2004) · Microbiology · doi:10.1099/mic.0.26915-0 · Cited by 24 · see citing works
Rebière, M. (1986) · FEMS Microbiology Letters · doi:10.1016/0378-1097(86)90418-0 · Cited by 19 · see citing works
Temporal Genetic Mapping in the Blue-green Alga Anacystis nidulans Using Ethyl Methanesulphonate
Delaney, S. F., & Carr, N. G. (1975) · Journal of General Microbiology · doi:10.1099/00221287-88-2-259 · Cited by 17 · see citing works
Maeda, S.-I., Sugita, C., Sugita, M., & Omata, T. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m513196200 · Cited by 14 · see citing works
Self-citationA New Class of Signal Transducer in His-Asp Phosphorelay Systems
Maeda, S.-I., Sugita, C., Sugita, M., & Omata, T. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m608680200 · Cited by 12 · see citing works
Self-citationCloning and characterization of a plasmid DNA from Anacystis nidulans 6301
Shinozaki, K., Tomioka, N., Chieko, Y., & Sugiura, M. (1982) · Gene · doi:10.1016/0378-1119(82)90009-9 · Cited by 11 · see citing works
Self-citationSugita, M. (1995) · DNA Research · doi:10.1093/dnares/2.2.71 · Cited by 10 · see citing works
Self-citationAnandan, S., Nalty, M. S., Cogdell, D. E., & Golden, S. S. (1996) · Archives of Microbiology · doi:10.1007/s002030050355 · Cited by 7 · see citing works
Fukuta, M. (1994) · DNA Research · doi:10.1093/dnares/1.2.97 · Cited by 2 · see citing works
Genome analysis of Synechococcus sp. strain PCC6301
Sugita, M., Tsudzuki, T., Sugita, C., Ishiura, M., Ogata, K., Jikuya, H., & Takano, J. (2001) · Science Access · doi:10.1071/sa0403729 · Cited by 2 · see citing works
Self-citation富岡, 登. (1982) · Medical Entomology and Zoology · Cited by 1 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Improving the coverage of the cyanobacterial phylum using diversity driven genome sequencing
Shih, P. M., Wu, D., Latifi, A., Axen, S. D., Fewer, D. P., Talla, E., Calteau, A., Cai, F., Tandeau de Marsac, N., Rippka, R., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1217107110 · Cited by 800 · see citing works
Evolutionary Conservation of Human Drug Targets in Organisms used for Environmental Risk Assessments
Gunnarsson, L. M., Jauhiainen, A., Kristiansson, E., Nerman, O., & Larsson, D. G. J. (2008) · Environmental Science & Technology · doi:10.1021/es8005173 · Cited by 594 · see citing works
Yu, J., Liberton, M., Cliften, P. F., Head, R. D., Jacobs, J., Smith, R. D., Koppenaal, D., Brand, J. J., & Pakrasi, H. B. (2015) · Scientific Reports · doi:10.1038/srep08132 · Cited by 372 · see citing works
Status, causes and controls of cyanobacterial blooms in Lake Erie
Steffen, M. M., Belisle, B. S., Watson, S. B., Boyer, G. L., & Wilhelm, S. W. (2014) · Journal of Great Lakes Research · doi:10.1016/j.jglr.2013.12.012 · Cited by 235 · see citing works
A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
Axen, S. D., Erbilgin, O., & Kerfeld, C. A. (2014) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1003898 · Cited by 229 · see citing works
Ito, H., Mutsuda, M., Murayama, Y., Tomita, J., Hosokawa, N., Terauchi, K., Sugita, C., Sugita, M., Kondo, T., & Iwasaki, H. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0902587106 · Cited by 186 · see citing works
Self-citationThe Membrane-Associated CpcG2-Phycobilisome in Synechocystis: A New Photosystem I Antenna
Kondo, K., Ochiai, Y., Katayama, M., & Ikeuchi, M. (2007) · PLANT PHYSIOLOGY · doi:10.1104/pp.107.099267 · Cited by 134 · see citing works
Vu, C. H. T., Lee, H., Chang, Y. K., & Oh, H. (2017) · Biotechnology Advances · doi:10.1016/j.biotechadv.2017.12.018 · Cited by 121 · see citing works
Toolboxes for cyanobacteria: recent advances and future direction
Sun, T., Li, S., Song, X., Diao, J., Chen, L., & Zhang, W. (2018) · Biotechnology Advances · doi:10.1016/j.biotechadv.2018.04.007 · Cited by 116 · see citing works
Suzuki, E., Ohkawa, H., Moriya, K., Matsubara, T., Nagaike, Y., Iwasaki, I., Fujiwara, S., Tsuzuki, M., & Nakamura, Y. (2010) · Applied and Environmental Microbiology · doi:10.1128/aem.00397-08 · Cited by 111 · see citing works
Huang, S., Wang, K., Jiao, N., & Chen, F. (2011) · Environmental Microbiology · doi:10.1111/j.1462-2920.2011.02667.x · Cited by 102 · see citing works
Synechocystis PCC 6803 overexpressing RuBisCO grow faster with increased photosynthesis
Liang, F., & Lindblad, P. C. (2017) · Metabolic Engineering Communications · doi:10.1016/j.meteno.2017.02.002 · Cited by 93 · see citing works
Signature proteins for the major clades of Cyanobacteria
Gupta, R. S., & Mathews, D. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-24 · Cited by 91 · see citing works
Schwarz, D., Nodop, A., Hüge, J., Purfürst, S., Forchhammer, K., Michel, K., Bauwe, H., Kopka, J., & Hagemann, M. (2011) · PLANT PHYSIOLOGY · doi:10.1104/pp.110.170225 · Cited by 85 · see citing works
Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus
Yang, Y., Lam, V., Adomako, M., Simkovsky, R., Jakob, A., Rockwell, N. C., Cohen, S., Taton, A., Wang, J., Lagarias, J. C., et al. (2018) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1812871115 · Cited by 78 · see citing works
Light‐dependent and asynchronous replication of cyanobacterial multi‐copy chromosomes
Watanabe, S., Ohbayashi, R., Shiwa, Y., Noda, A., Kanesaki, Y., Chibazakura, T., & Yoshikawa, H. (2012) · Molecular Microbiology · doi:10.1111/j.1365-2958.2012.07971.x · Cited by 73 · see citing works
Hanaoka, M., & Tanaka, K. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2008.03600.x · Cited by 69 · see citing works
Cyanobacterial genomics for ecology and biotechnology
Hess, W. R. (2011) · Current Opinion in Microbiology · doi:10.1016/j.mib.2011.07.024 · Cited by 68 · see citing works
Gupta, R. S. (2009) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.005678-0 · Cited by 67 · see citing works
Seki, A., Hanaoka, M., Akimoto, Y., Masuda, S., Iwasaki, H., & Tanaka, K. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m707582200 · Cited by 62 · see citing works
Baran, R., Ivanova, N., Jose, N., García‐Pichel, F., Kyrpides, N. C., Gugger, M. F., & Northen, T. R. (2013) · Marine Drugs · doi:10.3390/md11103617 · Cited by 61 · see citing works
A new genomic taxonomy system for the Synechococcus collective
Salazar, V. W., Tschoeke, D. A., Swings, J., Cosenza, C. A. N., Mattoso, M., Thompson, C. C., & Thompson, F. L. (2020) · Environmental Microbiology · doi:10.1111/1462-2920.15173 · Cited by 54 · see citing works
A Cyanobacterial Non-coding RNA, Yfr1, is Required for Growth Under Multiple Stress Conditions
Nakamura, T., Naito, K., Yokota, N., Sugita, C., & Sugita, M. (2007) · Plant and Cell Physiology · doi:10.1093/pcp/pcm098 · Cited by 49 · see citing works
Self-citationModal Codon Usage: Assessing the Typical Codon Usage of a Genome
Davis, J. J., & Olsen, G. J. (2009) · Molecular Biology and Evolution · doi:10.1093/molbev/msp281 · Cited by 45 · see citing works
Heterotrophy among Cyanobacteria
Stebegg, R., Schmetterer, G., & Rompel, A. (2023) · ACS Omega · doi:10.1021/acsomega.3c02205 · Cited by 41 · see citing works
Iron stress genes in marine Synechococcus and the development of a flow cytometric iron stress assay
Rivers, A. R., Jakuba, R. W., & Webb, E. A. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01778.x · Cited by 41 · see citing works
Computational analysis of LexA regulons in Cyanobacteria
Li, S., Xu, M., & Su, Z. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-527 · Cited by 39 · see citing works
Xu, T., Qin, S., Hu, Y., Song, Z., Ying, J., Li, P., Dong, W., Zhao, F., Yang, H., & Bao, Q. (2016) · DNA Research · doi:10.1093/dnares/dsw023 · Cited by 37 · see citing works
“Synechococcus elongates PCC 6301 and PCC 7942 chromosome.(47,48) However, these authors did not provide possible suggestions underlying the generation of the chromosomal inversion.”
BackgroundBalsera, M., Uberegui, E., Susanti, D., Schmitz, R. A., Mukhopadhyay, B., Schürmann, P., & Buchanan, B. B. (2012) · Planta · doi:10.1007/s00425-012-1803-y · Cited by 38 · see citing works
Metabolic systems analysis to advance algal biotechnology
Schmidt, B. J., Lin‐Schmidt, X., Chamberlin, A., Salehi‐Ashtiani, K., & Papin, J. A. (2010) · Biotechnology Journal · doi:10.1002/biot.201000129 · Cited by 34 · see citing works
Ranade, S. S., García‐Gil, M. R., & Rosselló, J. A. (2016) · Molecular Genetics and Genomics · doi:10.1007/s00438-015-1159-7 · Cited by 34 · see citing works
Khumalo, M. J., Nzuza, N., Padayachee, T., Chen, W., Yu, J., Nelson, D. R., & Syed, K. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21020656 · Cited by 34 · see citing works
A Library of Tunable, Portable, and Inducer-Free Promoters Derived from Cyanobacteria
Sengupta, A., Madhu, S., & Wangikar, P. P. (2020) · ACS Synthetic Biology · doi:10.1021/acssynbio.0c00152 · Cited by 34 · see citing works
Comparative Genomics of Synechococcus elongatus Explains the Phenotypic Diversity of the Strains
Adomako, M., Ernst, D. C., Simkovsky, R., Chao, Y.-Y., Wang, J., Fang, M., Bouchier, C., López‐Igual, R., Mazel, D., Gugger, M. F., et al. (2022) · mBio · doi:10.1128/mbio.00862-22 · Cited by 34 · see citing works
Function and benefits of natural competence in cyanobacteria: from ecology to targeted manipulation
Schirmacher, A. M., Hanamghar, S. S., & Zedler, J. A. Z. (2020) · Life · doi:10.3390/life10110249 · Cited by 28 · see citing works
Lea‐Smith, D. J., Mills, L. A., Moreno-Cabezuelo, J. Á., Wlodarczyk, A., Victoria, A. J., Mejı́as, R., Nenninger, A., Moxon, S., Bombelli, P., Selão, T. T., et al. (2022) · Biomolecules · doi:10.3390/biom12070872 · Cited by 27 · see citing works
Satta, A., Esquirol, L., Ebert, B. E., Newman, J. M., Peat, T. S., Plan, M. R., Schenk, G., & Vickers, C. E. (2022) · FEBS Journal · doi:10.1111/febs.16556 · Cited by 24 · see citing works
Luo, H., & Eaton‐Rye, J. J. (2008) · Photosynthesis Research · doi:10.1007/s11120-008-9375-1 · Cited by 23 · see citing works
Genome Sequence and Composition of a Tolyporphin-Producing Cyanobacterium-Microbial Community
Hughes, R., Zhang, Y., Zhang, R., Williams, P. G., Lindsey, J. S., & Miller, E. S. (2017) · Applied and Environmental Microbiology · doi:10.1128/aem.01068-17 · Cited by 22 · see citing works
The Tat protein export pathway and its role in cyanobacterial metalloprotein biosynthesis
Barnett, J. P., Robinson, C., Scanlan, D. J., & Blindauer, C. A. (2011) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2011.02391.x · Cited by 19 · see citing works
Govindjee at 80: more than 50 years of free energy for photosynthesis
Eaton‐Rye, J. J. (2013) · Photosynthesis Research · doi:10.1007/s11120-013-9921-3 · Cited by 19 · see citing works
Kato, H., Watanabe, S., Nimura-Matsune, K., Chibazakura, T., Tozawa, Y., & Yoshikawa, H. (2012) · Bioscience Biotechnology and Biochemistry · doi:10.1271/bbb.120172 · Cited by 18 · see citing works
Nair, R. R., Nandhini, M. B., Sethuraman, T., & Doss, G. (2013) · SpringerPlus · doi:10.1186/2193-1801-2-492 · Cited by 17 · see citing works
Functional Analysis of the Synechococcus elongatus PCC 7942 Genome
Chen, Y., Holtman, C. K., Taton, A., & Golden, S. S. (2011) · Advances in photosynthesis and respiration · doi:10.1007/978-94-007-1533-2_5 · Cited by 15 · see citing works
Qiao, C., Zhang, M., Luo, Q., & Lü, X. (2019) · Journal of Basic Microbiology · doi:10.1002/jobm.201800676 · Cited by 14 · see citing works
Regulatory sRNAs in Cyanobacteria
Hu, J., & Wang, Q. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02399 · Cited by 14 · see citing works
Gao, X., Liu, K., & Qiu, B. (2010) · Acta Physiologiae Plantarum · doi:10.1007/s11738-010-0662-z · Cited by 13 · see citing works
SUBSTANDARD STARCH GRAIN7 regulates starch grain size and endosperm development in rice
Yan, H., Ren, Y., Zhang, B., Jin, J., Du, F., Shan, Z., Fu, Y., Zhu, Y., Wang, X., Zhu, C., et al. (2024) · Plant Biotechnology Journal · doi:10.1111/pbi.14444 · Cited by 12 · see citing works
Sugita, C., Kato, Y., Yoshioka, Y., Tsurumi, N., Iida, Y., Machida, Y., & Sugita, M. (2012) · Plant and Cell Physiology · doi:10.1093/pcp/pcs058 · Cited by 12 · see citing works
Self-citationWood, S. A., Rhodes, L., Smith, K. F., Lengline, F., Ponikla, K., & Pochon, X. (2016) · New Zealand Journal of Botany · doi:10.1080/0028825x.2016.1205634 · Cited by 11 · see citing works
Rapp, J., Rath, P., Kilian, J., Brilisauer, K., Grond, S., & Forchhammer, K. (2021) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2021.100621 · Cited by 11 · see citing works
Evaluation of New Genetic Toolkits and Their Role for Ethanol Production in Cyanobacteria
Gundolf, R., Oberleitner, S., & Richter, J. (2019) · Energies · doi:10.3390/en12183515 · Cited by 10 · see citing works
A minimum set of regulators to thrive in the ocean
Lambrecht, S. J., Steglich, C., & Hess, W. R. (2020) · FEMS Microbiology Reviews · doi:10.1093/femsre/fuaa005 · Cited by 10 · see citing works
A Novel Application of Laser in Biocontrol of Plant Pathogenic Bacteria
Semary, N. A. H. E., Naim, H. M. A., & Aldayel, M. F. (2022) · Applied Sciences · doi:10.3390/app12104933 · Cited by 9 · see citing works
Eldridge, S. L. C., & Wood, T. M. (2019) · Lake and Reservoir Management · doi:10.1080/10402381.2019.1619112 · Cited by 9 · see citing works
Delaye, L., González-Domenech, C. M., Garcillán-Barcia, M. P., Peretó, J. G., de la Cruz, F., & Moyá, A. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-25 · Cited by 9 · see citing works
Sivaraman, K., Seshasayee, A. S. N., Tarwater, P. M., & Cole, A. M. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkm1181 · Cited by 9 · see citing works
Genomics of microalgae, fuel for the future?
Brooijmans, R. J. W., & Siezen, R. J. (2010) · Microbial Biotechnology · doi:10.1111/j.1751-7915.2010.00204.x · Cited by 8 · see citing works
Cobos, M., Condori, R. C., Grández, M. A., Estela, S. L., Aguila, M. T. D., Castro, C. G., Rodríguez, H. N., Vargas, J. A., Tresierra, Á. B., Barriga, L. A., et al. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.973324 · Cited by 8 · see citing works
Genera specific distribution of DEAD-box RNA helicases in cyanobacteria
Whitford, D. S., Whitman, B. T., & Owttrim, G. W. (2021) · Microbial Genomics · doi:10.1099/mgen.0.000517 · Cited by 7 · see citing works
Evolution of gene orders in genomes of cyanobacteria
Markov, A. V., & Захаров, И. А. (2009) · Russian Journal of Genetics · doi:10.1134/s1022795409080031 · Cited by 7 · see citing works
Eckert, T. S. (2019) · Cited by 7 · see citing works
Meng, W., Xia, M., Hu, J., Wang, C., Qian, C., Zhang, M., & Fu, W. (2025) · Frontiers in Marine Science · doi:10.3389/fmars.2025.1542670 · Cited by 5 · see citing works
Iron limitation and the role of siderophores in marine Synechococcus
Rivers, A. R. (2009) · doi:10.1575/1912/2973 · Cited by 4 · see citing works
Metagenomic analysis in Lake Onego (Russia) Synechococcus cyanobacteria
Vasileva, A., Skopina, M. Y., Averina, S. G., Gavrilova, O. V., Ivanikova, N. V., & Pinevich, A. V. (2017) · Journal of Great Lakes Research · doi:10.1016/j.jglr.2017.03.003 · Cited by 3 · see citing works
Starikov, A., Userbaeva, A. A., Lapina, S. S., Mironov, K. S., Maslova, I. P., Pchelkin, V. P., Zayadan, B. K., Sinetova, M. A., & Los, D. A. (2017) · Russian Journal of Plant Physiology · doi:10.1134/s1021443717040148 · Cited by 3 · see citing works
Stark, G. F., Truchon, A. R., & Wilhelm, S. W. (2024) · BMC Genomics · doi:10.1186/s12864-024-10839-5 · Cited by 3 · see citing works
Singh, S. K., Shrivastava, A. K., Kumar, A., Singh, V. K., Yadav, D., Modi, A. R., Wang, W., Singh, A. K., Singh, T., Sitther, V., et al. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-819311-2.00009-7 · Cited by 3 · see citing works
Lancaster, C. R. D. (2011) · Springer eBooks · doi:10.1007/978-94-007-0388-9_17 · Cited by 3 · see citing works
Hayashi, R., Sugita, C., & Sugita, M. (2016) · Archives of Microbiology · doi:10.1007/s00203-016-1270-0 · Cited by 2 · see citing works
Self-citationÁlvarez-Canales, G., Arellano-Álvarez, G., González-Domenech, C. M., de la Cruz, F., Moyá, A., & Delaye, L. (2015) · Journal of Molecular Evolution · doi:10.1007/s00239-015-9684-x · Cited by 2 · see citing works
Fujita, H., Syōno, K., Machida, Y., & Kawaguchi, M. (2008) · Microbes and Environments · doi:10.1264/jsme2.me08519 · Cited by 2 · see citing works
Pothipongsa, A., Jantaro, S., Salminen, T. A., & Incharoensakdi, A. (2017) · World Journal of Microbiology and Biotechnology · doi:10.1007/s11274-017-2242-5 · Cited by 1 · see citing works
Cyanobacterial Biofuel and Chemical Production for CO2Sequestration
Oliver, J. W. K., & Atsumi, S. (2013) · doi:10.1002/9781118659892.ch7 · Cited by 1 · see citing works
Prediction of Cis Regulatory Elements in the Genome of Synechococcus Elongatus PCC 6301
Arun, P. V. P. S., Subhashini, M., Santhosh, C. H., Krishna, P. S., & Prakash, J. S. S. (2013) · Advanced topics in science and technology in China · doi:10.1007/978-3-642-32034-7_77
Genome-based natural product biosynthetic gene cluster discovery : from sequencing to mining
Wang, H. (2014) · Työväentutkimus Vuosikirja
Experimental Definition and Validation of Protein Coding Transcripts in Chlamydomonas reinhardtii
Salehi‐Ashtiani, K., & Papin, J. A. (2012) · doi:10.2172/1033125
Ma, X., Zhang, Y., Fang, Z., Fang, J., Sha, T., & Qin, L. (2025) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2025.08.035
Phylogenetic and Comparative Genomic Analyses of Heterocystous Cyanobacteria
Howard-Azzeh, J. M. (2013) · MacSphere (McMaster University) · doi:10.71548/19498
- Authors
- Sugita, C., Ogata, K., Shikata, M., Jikuya, H., Takano, J., Furumichi, M., Kanehisa, M., Omata, T., Sugiura, M., & Sugita, M.
- Affiliations
- Center for Gene Research, Nagoya University (JP)
- Shimadzu (Japan) (JP)
- Kyushu University (JP)
- Kyoto University Institute for Chemical Research (JP)
- Nagoya University (JP)
- Nagoya City University (JP)
- Corresponding author
- Sugita, Mamoru
- Venue
- Photosynthesis Research
- Published
- 2007-01-09
- Volume
- 93
- Issue
- 1-3
- Pages
- 55-67
- ISSN
- 0166-8595 (ISSN-L)
- 1573-5079
- OpenAlex
- W2038879617
- Cited by
- 80
- References
- 51
- Citations by year
- 2025: 2 · 2024: 2 · 2023: 1 · 2022: 5 · 2021: 3 · 2020: 6 · 2019: 4 · 2018: 3 · 2017: 6 · 2016: 4 · 2015: 2 · 2014: 3 · 2013: 6 · 2012: 6
- FWCI
- 2.65
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Photosynthesis Research (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Photosynthetic Processes and Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Keywords
- cyanobacterial genome, chromosome sequence, gene content, gene structure, photosynthesis genes, two-component signal transduction, gene inversion, Anacystis nidulans, protein-coding genes
- MeSH terms
- Base Sequence, Chromosomes, Bacterial, DNA Transposable Elements, Fresh Water, Genes, Bacterial, Molecular Sequence Data, Photosynthesis, Sigma Factor, Transcription Factors, Signal Transduction, Sequence Analysis, DNA, Transposases, Synechococcus
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review