CoChat
Sign Up
Cited by 809

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Two classes of short interfering RNA in RNA silencing

Hamilton, Andrew, Voinnet, Olivier, Chappell, Louise, Baulcombe, David·2002·The EMBO Journal
DOI 10.1093/emboj/cdf464
Open this paper in CoChat — free account

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1093/emboj/cdf464

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Show all 1 references

Research works printed but not linked: 65

  1. Anandalakshmi R, Pruss GJ, Ge X, Marathe R, Smith TH and Vance VB (1998) A viral suppressor of gene silencing in plants. Proc Natl Acad Sci USA, 95, 13079–13084. · DOI
  2. Anandalakshmi R, Marathe R, Ge X, Herr JM, Mau C, Mallory A, Pruss G, Bowman L and Vance VB (2000) A calmodulin‐related protein that suppresses posttranscriptional gene silencing in plants. Science, 290, 142–144. · DOI
  3. Aravin AA, Naumova NM, Tulin AV, Vagin VV, Rozovsky YM and Gvozdev VA (2001) Double‐stranded RNA‐mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline. Curr Biol, 11, 1017–1027. · DOI
  4. Bendahmane A, Querci M, Kanyuka K and Baulcombe DC (2000) Agrobacterium transient expression system as a tool for isolation of disease resistance genes: application to the Rx2 locus in potato. Plant J, 21, 73–81. · DOI
  5. Bernstein E, Caudy AA, Hammond SM and Hannon GJ (2001) Role for a bidentate ribonuclease in the initiation step of RNA interference. Nature, 409, 363–366. · DOI
  6. Brigneti G, Voinnet O, Li WX, Ji LH, Ding SW and Baulcombe DC (1998) Viral pathogenicity determinants are suppressors of transgene silencing in Nicotiana benthamiana. EMBO J, 17, 6739–6746. · DOI
  7. Dalmay T, Hamilton AJ, Rudd S, Angell S and Baulcombe DC (2000) An RNA‐dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell, 101, 543–553. · DOI
  8. Dalmay TD, Horsefield R, Braunstein TH and Baulcombe DC (2001) SDE3 encodes an RNA helicase required for post‐transcriptional gene silencing in Arabidopsis. EMBO J, 20, 2069–2078. · DOI
  9. Dunoyer P, Pfeffer S, Fritsch C, Hemmer O, Voinnet O and Richards KE (2002) Identification, subcellular localization and some properties of a cysteine‐rich suppressor of gene silencing encoded by peanut clump virus. Plant J, 29, 555–567. · DOI
  10. Elbashir SM, Lendeckel W and Tuschl T (2001a) RNA interference is mediated by 21‐ and 22‐nucleotide RNAs. Genes Dev, 15, 188–200. · DOI
  11. Elbashir SM, Martinez J, Patkaniowska A, Lendeckel W and Tuschl T (2001b) Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate. EMBO J, 20, 6877–6888. · DOI
  12. Elmayan T et al. (1998) Arabidopsis mutants impaired in cosuppression. Plant Cell, 10, 1747–1757. · DOI
  13. English JJ, Mueller E and Baulcombe DC (1996) Suppression of virus accumulation in transgenic plants exhibiting silencing of nuclear genes. Plant Cell, 8, 179–188. · DOI
  14. Flavell RB (1994) Inactivation of gene expression in plants as a consequence of specific sequence duplication. Proc Natl Acad Sci USA, 91, 3490–3496. · DOI
  15. Grandbastien MA, Spielmann A and Caboche M (1989) TNT1, a mobile retroviral‐like transposable element of tobacco isolated by plant‐cell genetics. Nature, 337, 376–380. · DOI
  16. Grishok A et al. (2001) Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing. Cell, 106, 23–34. · DOI · Paper page
  17. Guo HS and Ding SW (2002) A viral protein inhibits the long range signaling activity of the gene silencing signal. EMBO J, 21, 398–407. · DOI
  18. Hamilton AJ and Baulcombe DC (1999) A novel species of small antisense RNA in post‐transcriptional gene silencing. Science, 286, 950–952. · DOI
  19. Hamilton CM, Frary A, Lewis C and Tanksley SD (1996) Stable transfer of intact high molecular weight DNA into plant chromosomes. Proc Natl Acad Sci USA, 93, 9975–9979. · DOI
  20. Hammond SM, Bernstein E, Beach D and Hannon G (2000) An RNA‐directed nuclease mediates post‐transcriptional gene silencing in Drosophila cell extracts. Nature, 404, 293–296. · DOI
  21. Hammond SM, Boettcher S, Caudy AA, Kobayashi R and Hannon GJ (2001a) Argonaute2, a link between genetic and biochemical analyses of RNAi. Science, 293, 1146–1150. · DOI · Paper page
  22. Hammond SM, Caudy AA and Hannon GJ (2001b) Post‐transcriptional gene silencing by double‐stranded RNA. Nat Rev Genet, 2, 110–119. · DOI
  23. Hellens RP, Edwards EA, Leyland NR, Bean S and Mullineaux PM (2000) pGreen: a versatile and flexible binary Ti vector for Agrobacteruim‐mediated plant transformation. Plant Mol Biol, 42, 819–832. · DOI
  24. Hirochika H, Okamoto H and Kakutani T (2000) Silencing of retrotransposons in arabidopsis and reactivation by the ddm1 mutation. Plant Cell, 12, 357–368. · DOI
  25. Hutvagner G, McLachlan J, Pasquinelli AE, Balint E, Tuschl T and Zamore PD (2001) A cellular function for the RNA‐interference enzyme Dicer in the maturation of the let‐7 small temporal RNA. Science, 293, 834–838. · DOI · Paper page
  26. Ingelbrecht I, Van Houdt H, Van Montagu M and Depicker A (1994) Posttranscriptional silencing of reporter transgenes in tobacco correlates with DNA methylation. Proc Natl Acad Sci USA, 91, 10502–10506. · DOI
  27. Johansen LK and Carrington JC (2001) Silencing on the spot. Induction and suppression of RNA silencing in the Agrobacterium‐mediated transient expression system. Plant Physiol, 126, 930–938. · DOI
  28. Jones L, Hamilton AJ, Voinnet O, Thomas CL, Maule AJ and Baulcombe DC (1999) RNA–DNA interactions and DNA methylation in post‐transcriptional gene silencing. Plant Cell, 11, 2291–2302.
  29. Jones L, Ratcliff F and Baulcombe DC (2001) RNA‐directed transcriptional gene silencing in plants can be inherited independently of the RNA trigger and requires Met1 for maintenance. Curr Biol, 11, 747–757. · DOI
  30. Kasschau KD and Carrington JC (1998) A counterdefensive strategy of plant viruses: suppression of post‐transcriptional gene silencing. Cell, 95, 461–470. · DOI
  31. Ketting R, Haverkamp T, van Luenen H and Plasterk R (1999) mut‐7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner syndrome helicase and RNaseD. Cell, 99, 133–141. · DOI
  32. Ketting RF, Fischer SEJ, Bernstein E, Sijen T, Hannon GJ and Plasterk RHA (2001) Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C.elegans. Genes Dev, 15, 2654–2659. · DOI · Paper page
  33. Llave C, Kasschau KD and Carrington JC (2000) Virus‐encoded suppressor of posttranscriptional gene silencing targets a maintenance step in the silencing pathway. Proc Natl Acad Sci USA, 97, 13401–13406. · DOI
  34. Mallory AC et al. (2001) HC‐Pro suppression of transgene silencing eliminates the small RNAs but not transgene methylation or the mobile signal. Plant Cell, 13, 571–583. · DOI
  35. Marano MR and Baulcombe D (1998) Pathogen‐derived resistance targeted against the negative‐strand RNA of tobacco mosaic virus: RNA strand‐specific gene silencing? Plant J, 13, 537–546. · DOI
  36. Mette MF, Aufsatz W, van der Winden J, Matzke MA and Matzke AJM (2000) Transcriptional silencing and promoter methylation triggered by double‐stranded RNA. EMBO J, 19, 5194–5201. · DOI
  37. Mette MF, Matzke AJM and Matzke MA (2001) Resistance of RNA‐mediated TGS to HC‐Pro, a viral suppressor of PTGS, suggests alternative pathways for dsRNA processing. Curr Biol, 11, 1119–1123. · DOI
  38. Mishra KK and Handa AK (1998) Post‐transcriptional silencing of pectin methylesterase gene in transgenic tomato fruits results from impaired pre‐mRNA processing. Plant J, 14, 583–592. · DOI
  39. Miura A, Yonebayashi S, Watanabe K, Toyama T, Shimada H and Kakutani T (2001) Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature, 411, 212–214. · DOI
  40. Morel JB, Mourrain P, Beclin C and Vaucheret H (2000) DNA methylation and chromatin structure affect transcriptional and post‐transcriptional transgene silencing in Arabidopsis. Curr Biol, 10, 1591–1594. · DOI
  41. Mourrain P et al. (2000) Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance. Cell, 101, 533–542. · DOI
  42. Myouga F, Tsuchimoto S, Noma K, Ohtsubo H and Ohtsubo E (2001) Identification and structural analysis of SINE elements in the Arabidopsis thaliana genome. Genes Genet Syst, 76, 169–179. · DOI
  43. Napoli C, Lemieux C and Jorgensen RA (1990) Introduction of a chimeric chalcone synthase gene into Petunia results in reversible co‐suppression of homologous genes in trans. Plant Cell, 2, 279–289. · DOI
  44. Nykanen A, Haley B and Zamore PD (2001) ATP requirements and small interfering RNA structure in the RNA interference pathway. Cell, 107, 309–321. · DOI
  45. Palauqui J‐C, Elmayan T, Pollien J‐M and Vaucheret H (1997) Systemic acquired silencing: transgene‐specific post‐transcriptional silencing is transmitted by grafting from silenced stocks to non‐silenced scions. EMBO J, 16, 4738–4745. · DOI
  46. Plasterk RHA and Ketting RF (2000) The silence of the genes. Curr Opin Genet Dev, 10, 562–567. · DOI
  47. Ratcliff F, Martin‐Hernandez AM and Baulcombe DC (2001) Tobacco rattle virus as a vector for analysis of gene function by silencing. Plant J, 25, 237–245. · DOI
  48. Ruiz MT, Voinnet O and Baulcombe DC (1998) Initiation and maintenance of virus‐induced gene silencing. Plant Cell, 10, 937–946. · DOI
  49. Sambrook J, Fritsch EF and Maniatis T (1989) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
  50. Sharp PA and Zamore PD (2000) RNA interference. Science, 287, 2431–2433. · DOI
  51. Sijen T, Fleenor J, Simmer F, Thijssen KL, Parrish S, Timmons L, Plasterk RHA and Fire A (2001a) On the role of RNA amplification in dsRNA‐triggered gene silencing. Cell, 107, 465–476. · DOI
  52. Sijen T, Vijn I, Rebocho A, van Blokland R, Roelofs D, Mol JNM and Kooter JM (2001b) Transcriptional and posttranscriptional gene silencing are mechanistically related. Curr Biol, 11, 436–440. · DOI
  53. Tabara H, Sarkissian M, Kelly WG, Fleenor J, Grishok A, Timmons L, Fire A and Mello CC (1999) The rde‐1 gene, RNA interference and transposon silencing in C. elegans. Cell, 99, 123–132. · DOI
  54. Vaistij FE, Jones L and Baulcombe DC (2002) Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA‐dependent RNA polymerase. Plant Cell, 14, 857–867. · DOI
  55. VanHoudt H, Ingelbrecht I, VanMontagu M and Depicker A (1997) Post‐transcriptional silencing of a neomycin phosphotransferase II transgene correlates with the accumulation of unproductive RNAs and with increased cytosine methylation of 3′ flanking regions. Plant J, 12, 379–392. · DOI
  56. Voinnet O (2001) RNA silencing as a plant immune system against viruses. Trends Genet, 17, 449–459. · DOI
  57. Voinnet O and Baulcombe DC (1997) Systemic signalling in gene silencing. Nature, 389, 553. · DOI
  58. Voinnet O, Vain P, Angell S and Baulcombe DC (1998) Systemic spread of sequence‐specific transgene RNA degradation is initiated by localised introduction of ectopic promoterless DNA. Cell, 95, 177–187. · DOI
  59. Voinnet O, Pinto YM and Baulcombe DC (1999) Suppression of gene silencing: a general strategy used by diverse DNA and RNA viruses. Proc Natl Acad Sci USA, 96, 14147–14152. · DOI
  60. Voinnet O, Lederer C and Baulcombe DC (2000) A viral movement protein prevents systemic spread of the gene silencing signal in Nicotiana benthamiana. Cell, 103, 157–167. · DOI
  61. Wassenegger M and Pelissier T (1998) A model for RNA‐mediated gene silencing in higher plants. Plant Mol Biol, 37, 349–362. · DOI
  62. Winston WM, olodowitch C and Hunter CP (2002) Systemic RNA in C.elegans requires the putative transmembrane protein SID‐1. Science, 295, 2456–2459. · DOI
  63. Wu‐Scharf D, Jeong B‐R, Zhang C and Cerutti H (2000) Transgene and transposon silencing in Chlamydomonas reinhardtii by a DEAH‐Box RNA helicase. Science, 290, 1159–1162. · DOI
  64. Yoshioka Y, Matsumoto S, Kojima S, Ohshima K, Okada N and Machida Y (1993) Molecular characterisation of a short interspersed repetitive element from tobacco that exhibits sequence homology to specific transfer‐RNAS. Proc Natl Acad Sci USA, 90, 6562–6566. · DOI
  65. Zamore PD, Tuschl T, Sharp PA and Bartel DP (2000) RNAi: double‐stranded RNA directs the ATP‐dependent cleavage of mRNA at 21 to 23 nucleotide intervals. Cell, 101, 25–33. · DOI

Cited by

Sorted by citations

Metadata

Authors
Hamilton, A., Voinnet, O., Chappell, L., & Baulcombe, D.
Venue
The EMBO Journal
Publisher
Springer Science and Business Media LLC
Published
2002-09-02
Volume
21
Issue
17
Pages
4671-4679
ISSN
  • 0261-4189
  • 1460-2075
DOI
10.1093/emboj/cdf464
Cited by
809
References
1
Language
en
Update notices
Licence

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review