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A Simple Sequence Repeat-Based Linkage Map of Barley
Open accessAbstract
A total of 568 new simple sequence repeat (SSR)-based markers for barley have been developed from a combination of database sequences and small insert genomic libraries enriched for a range of short simple sequence repeats. Analysis of the SSRs on 16 barley cultivars revealed variable levels of informativeness but no obvious correlation was found with SSR repeat length, motif type, or map position. Of the 568 SSRs developed, 242 were genetically mapped, 216 with 37 previously published SSRs in a single doubled-haploid population derived from the F1 of an interspecific cross between the cultivar Lina and Hordeum spontaneum Canada Park and 26 SSRs in two other mapping populations. A total of 27 SSRs amplified multiple loci. Centromeric clustering of markers was observed in the main mapping population; however, the clustering severity was reduced in intraspecific crosses, supporting the notion that the observed marker distribution was largely a genetical effect. The mapped SSRs provide a framework for rapidly assigning chromosomal designations and polarity in future mapping programs in barley and a convenient alternative to RFLP for aligning information derived from different populations. A list of the 242 primer pairs that amplify mapped SSRs from total barley genomic DNA is presented.
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Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Cited by
Thiel, T., Michalek, W., Varshney, R., & Graner, A. (2003) · Theoretical and Applied Genetics · doi:10.1007/s00122-002-1031-0 · Cited by 2,535
Cardle, L., Ramsay, L., Milbourne, D., Macaulay, M., Marshall, D., & Waugh, R. (2000) · Genetics · doi:10.1093/genetics/156.2.847 · Cited by 422
Self-citationDomestication to Crop Improvement: Genetic Resources for Sorghum and Saccharum (Andropogoneae)
Dillon, S. L., Shapter, F. M., Henry, R. J., Cordeiro, G., Izquierdo, L., & Lee, L. S. (2007) · Annals of Botany · doi:10.1093/aob/mcm192 · Cited by 295
Advanced backcross QTL analysis in barley (Hordeum vulgare L.)
Pillen, K., Zacharias, A., & Léon, J. (2003) · Theoretical and Applied Genetics · doi:10.1007/s00122-003-1253-9 · Cited by 260
Domestication and crop evolution of wheat and barley: Genes, genomics, and future directions
Haas, M., Schreiber, M., & Mascher, M. (2019) · Journal of Integrative Plant Biology · doi:10.1111/jipb.12737 · Cited by 149
Metadata
- Authors
- Ramsay, L., Macaulay, M., Ivanissevich, S. D., MacLean, K., Cardle, L., Fuller, J., Edwards, K. J., Tuvesson, S., Morgante, M., Massari, A., Maestri, E., Marmiroli, N., Sjakste, T., Ganal, M., Powell, W., & Waugh, R.
- Venue
- Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2000-12-01
- Volume
- 156
- Issue
- 4
- Pages
- 1997-2005
- ISSN
- 0016-6731 (ISSN-L)
- 1943-2631
- OpenAlex
- W1957865117
- Cited by
- 643
- References
- 1
- FWCI
- 48.49
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Ramsay, L., Macaulay, M., Ivanissevich, S. D., MacLean, K., Cardle, L., Fuller, J., Edwards, K. J., Tuvesson, S., Morgante, M., Massari, A., Maestri, E., Marmiroli, N., Sjakste, T., Ganal, M., Powell, W., & Waugh, R. (2000). A Simple Sequence Repeat-Based Linkage Map of Barley. Genetics. https://doi.org/10.1093/genetics/156.4.1997
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