The DOI matches its Crossref record; 24 of the 24 references it cites were found in a registry or an index.
FlyBase: updates to the Drosophila genes and genomes database
Open accessAbstract
FlyBase (flybase.org) is a model organism database and knowledge base about Drosophila melanogaster, commonly known as the fruit fly. Researchers from around the world rely on the genetic, genomic, and functional information available in FlyBase, as well as its tools to view and interrogate these data. In this article, we describe the latest developments and updates to FlyBase. These include the introduction of single-cell RNA sequencing data, improved content and display of functional information, updated orthology pipelines, new chemical reports, and enhancements to our outreach resources.
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Citations
Cites
The Ensembl Variant Effect Predictor
McLaren, W., Gil, L., Hunt, S. E., Riat, H. S., Ritchie, G. R. S., Thormann, A., Flicek, P., & Cunningham, F. (2016) · Genome Biology · doi:10.1186/s13059-016-0974-4 · Cited by 8,099
Varadi, M., Anyango, S., Deshpande, M., Nair, S., Natassia, C., Yordanova, G., Yuan, D., Stroe, O., Wood, G., Laydon, A., et al. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkab1061 · Cited by 7,850 · cited 1×
“To this end, we have added images of 3D protein structures predicted by AlphaFold (Varadi et al .”
Kim, S., Chen, J., Cheng, T., Gindulyte, A., He, J., He, S., Li, Q., Shoemaker, B. A., Thiessen, P. A., Yu, B., et al. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkac956 · Cited by 3,443
ChEBI in 2016: Improved services and an expanding collection of metabolites
Hastings, J., Owen, G., Dekker, A., Ennis, M., Kale, N., Muthukrishnan, V., Turner, S., Swainston, N., Mendes, P., & Steinbeck, C. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkv1031 · Cited by 1,083
Rfam 14: expanded coverage of metagenomic, viral and microRNA families
Kalvari, I., Nawrocki, E. P., Ontiveros-Palacios, N., Argasinska, J., Lamkiewicz, K., Marz, M., Griffiths-Jones, S., Toffano-Nioche, C., Gautheret, D., Weinberg, Z., et al. (2021) · Nucleic Acids Research · doi:10.1093/nar/gkaa1047 · Cited by 1,045
An integrative approach to ortholog prediction for disease-focused and other functional studies
Hu, Y., Flockhart, I., Vinayagam, A., Bergwitz, C., Berger, B., Perrimon, N., & Mohr, S. E. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-357 · Cited by 848
Self-citationFly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly
Li, H., Janssens, J., De Waegeneer, M., Kolluru, S. S., Davie, K., Gardeux, V., Saelens, W., David, F. P. A., Brbić, M., Spanier, K., et al. (2022) · Science · doi:10.1126/science.abk2432 · Cited by 837
Self-citationThe Sequence Ontology: a tool for the unification of genome annotations
Eilbeck, K., Lewis, S. E., Mungall, C. J., Yandell, M., Stein, L., Durbin, R., & Ashburner, M. (2005) · Genome Biology · doi:10.1186/gb-2005-6-5-r44 · Cited by 806
OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity
Kuznetsov, D., Tegenfeldt, F., Manni, M., Seppey, M., Berkeley, M., Kriventseva, E. V., & Zdobnov, E. M. (2023) · Nucleic Acids Research · doi:10.1093/nar/gkac998 · Cited by 522
FlyBase: a guided tour of highlighted features
Gramates, L. S., Agapite, J., Attrill, H., Calvi, B. R., Crosby, M. A., dos Santos, G., Goodman, J. L., Goutte-Gattat, D., Jenkins, V. K., Kaufman, T., et al. (2022) · Genetics · doi:10.1093/genetics/iyac035 · Cited by 505
Self-citation
Cited by
Kim, S., Chen, J., Cheng, T., Gindulyte, A., He, J., He, S., Li, Q., Shoemaker, B. A., Thiessen, P. A., Yu, B., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkae1059 · Cited by 1,625
Zhao, L., Svetec, N., & Begun, D. J. (2024) · Annual Review of Genetics · doi:10.1146/annurev-genet-111523-102413 · Cited by 38
Kawaguchi, S., Xu, X., Soga, T., Yamaguchi, K., Kawasaki, R., Shimouchi, R., Date, S., & Kai, T. (2025) · eLife · doi:10.7554/elife.101967.3 · Cited by 10
Tillery, M. M. L., Zheng, C., Zheng, Y., & Megraw, T. L. (2024) · Molecular Biology of the Cell · doi:10.1091/mbc.e23-06-0245 · Cited by 9
Proteome-wide prediction of the functional impact of missense variants with ProteoCast
Abakarova, M., Freiberger, M. I., Liehrmann, A., Rera, M., & Laine, E. (2026) · Nature Communications · doi:10.1038/s41467-026-72140-1 · Cited by 5
Metadata
- Authors
- Öztürk-Çolak, A., Marygold, S. J., Antonazzo, G., Attrill, H., Goutte-Gattat, D., Jenkins, V. K., Matthews, B. B., Millburn, G., dos Santos, G., Tabone, C. J., FlyBase Consortium, Perrimon, N., Gelbart, S. R., Broll, K., Crosby, M., dos Santos, G., Falls, K., Gramates, L. S., Jenkins, V. K., Longden, I., Matthews, B. B., Seme, J., Tabone, C. J., Zhou, P., Zytkovicz, M., Brown, N., Antonazzo, G., Attrill, H., Goutte-Gattat, D., Larkin, A., Marygold, S., McLachlan, A., Millburn, G., Pilgrim, C., Öztürk-Çolak, A., Kaufman, T., Calvi, B., Campbell, S., Goodman, J., Strelets, V., Thurmond, J., Cripps, R., & Lovato, T.
- Venue
- GENETICS
- Publisher
- Oxford University Press (OUP)
- Published
- 2024-02-01
- Volume
- 227
- Issue
- 1
- ISSN
- 0016-6731 (ISSN-L)
- 1943-2631
- OpenAlex
- W4391424688
- Cited by
- 412
- References
- 24
- FWCI
- 47.52
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- CoChat. (2026). Citation check: FlyBase: updates to the Drosophila genes and genomes database. https://app.cochat.ai/papers/10.1093/genetics/iyad211
- The paper
- Öztürk-Çolak, A., Marygold, S. J., Antonazzo, G., Attrill, H., Goutte-Gattat, D., Jenkins, V. K., Matthews, B. B., Millburn, G., dos Santos, G., Tabone, C. J., FlyBase Consortium, Perrimon, N., Gelbart, S. R., Broll, K., Crosby, M., dos Santos, G., Falls, K., Gramates, L. S., Jenkins, V. K., . . . Lovato, T. (2024). FlyBase: updates to the Drosophila genes and genomes database. GENETICS. https://doi.org/10.1093/genetics/iyad211
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