The DOI matches its Crossref record; 79 of the 79 references it cites were found in a registry or an index.
Structural and mechanistic classification of uronic acid-containing polysaccharide lyases
Open accessAbstract
Polysaccharide lyases (PLs) have been assigned to 21 families based on their sequences, with ~ 50 singletons awaiting further classification. For 19 of these families, the structure of at least one protein is known. In this review, we have analyzed the available structural information and show that presently known PL families belong to six general folds. Only two general catalytic mechanisms have been observed among these PLs: (1) metal-assisted neutralization of the acidic group of the sugar next to the cleaved bond, with, rather unusually, arginine or lysine playing the role of Brønsted base and (2) neutralization of the acidic group on the sugar by a close approach of an amino or acidic group forcing its protonation and Tyr or Tyr-His acting as the Brønsted base and acid.
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The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
Cantarel, B. L., Coutinho, P. M., Rancurel, C., Bernard, T., Lombard, V., & Henrissat, B. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn663 · Cited by 5,972
Glycosylation in Cellular Mechanisms of Health and Disease
Ohtsubo, K., & Marth, J. D. (2006) · Cell · doi:10.1016/j.cell.2006.08.019 · Cited by 2,788
Glycosyltransferases: Structures, Functions, and Mechanisms
Lairson, L. L., Henrissat, B., Davies, G. J., & Withers, S. G. (2008) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.76.061005.092322 · Cited by 2,079
Bertozzi, C. R., & Kiessling, A. L. L. (2001) · Science · doi:10.1126/science.1059820 · Cited by 1,939
Pectins: structure, biosynthesis, and oligogalacturonide-related signaling
Ridley, B. L., O'Neill, M. A., & Mohnen, D. (2001) · Phytochemistry · doi:10.1016/s0031-9422(01)00113-3 · Cited by 1,912
PROTEOGLYCANS: STRUCTURES AND INTERACTIONS
Kjellén, L., & Lindahl, U. (1991) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.60.070191.002303 · Cited by 1,719
MATRIX PROTEOGLYCANS: From Molecular Design to Cellular Function
Iozzo, R. V. (1998) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.67.1.609 · Cited by 1,637
Proteoglycans: Structures And Interactions
Kjellen, L. (1991) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.60.1.443 · Cited by 1,594
Xanthan gum: production, recovery, and properties
Garcı́a-Ochoa, F., Santos, V. E., Casas, J. A., & Gómez, E. (2000) · Biotechnology Advances · doi:10.1016/s0734-9750(00)00050-1 · Cited by 1,584
Order Out of Chaos: Assembly of Ligand Binding Sites in Heparan Sulfate
Esko, J. D., & Selleck, S. B. (2002) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.71.110601.135458 · Cited by 1,495
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A hierarchical classification of polysaccharide lyases for glycogenomics
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Collén, P. N., Jeudy, A., Sassi, J.-F., Groisillier, A., Czjzek, M., Coutinho, P. M., & Helbert, W. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m113.537480 · Cited by 47
Weerasekera, R., Moreau, A., Huang, X., Nam, K.-M., Hinbest, A. J., Huynh, Y., Liu, X., Ashwood, C., Pepi, L. E., Paulson, E., et al. (2024) · PLOS Pathogens · doi:10.1371/journal.ppat.1012750 · Cited by 9
Metadata
- Authors
- Garron, M.-L., & Cygler, M.
- Venue
- Glycobiology
- Publisher
- Oxford University Press (OUP)
- Published
- 2010-08-30
- Volume
- 20
- Issue
- 12
- Pages
- 1547-1573
- ISSN
- 0959-6658 (ISSN-L)
- 1460-2423
- OpenAlex
- W2168621094
- Cited by
- 285
- References
- 79
- FWCI
- 10.19
- Type
- journal article
- Language
- en
- Open access
- bronze
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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