O-glycosylation on cerebrospinal fluid and plasma apolipoprotein E differs in the lipid-binding domain
Open accessAbstract
The O-glycoprotein apolipoprotein E (APOE), the strongest genetic risk factor for Alzheimer’s disease, associates with lipoproteins. Cerebrospinal fluid (CSF) APOE binds only high-density lipoproteins (HDLs), while plasma APOE attaches to lipoproteins of diverse sizes with binding fine-tuned by the C-terminal loop. To better understand the O-glycosylation on this critical molecule and differences across tissues, we analyzed the O-glycosylation on APOE isolated from the plasma and CSF of aged individuals. Detailed LC-MS/MS analyses allowed the identification of the glycosite and the attached glycan and site occupancy for all detectable glycosites on APOE and further three-dimensional modeling of physiological glycoforms of APOE. APOE is O-glycosylated at several sites: Thr8, Thr18, Thr194, Ser197, Thr289, Ser290 and Ser296. Plasma APOE held more abundant (20.5%) N-terminal (Thr8) sialylated core 1 (Neu5Acα2–3Galβ1–3GalNAcα1-) glycosylation compared to CSF APOE (0.1%). APOE was hinge domain glycosylated (Thr194 and Ser197) in both CSF (27.3%) and plasma (10.3%). CSF APOE held almost 10-fold more abundant C-terminal (Thr289, Ser290 and Ser296) glycosylation (36.8% of CSF peptide283–299 was glycosylated, 3.8% of plasma peptide283–299), with sialylated and disialylated (Neu5Acα2–3Galβ1–3(Neu5Acα2–6) GalNAcα1-) core 1 structures. Modeling suggested that C-terminal glycosylation, particularly the branched disialylated structure, could interact across domains including the receptor-binding domain. These data, although limited by sample size, suggest that there are tissue-specific APOE glycoforms. Sialylated glycans, previously shown to improve HDL binding, are more abundant on the lipid-binding domain of CSF APOE and reduced in plasma APOE. This indicates that APOE glycosylation may be implicated in lipoprotein-binding flexibility.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Post-translational modifications present in cells but absent in recombinant protein may influence the structural consequences of the L28P mutation.
“Second, post-translational modifications present in cells but absent in recombinant protein may influence the structural consequences of the L28P mutation 60,61 .”
From Utilizing a cell culture based novel cellular thermal shift assay to understand the isoform-dependent thermal stability of ApoE variants (2026) · cites this paper as [60]
The Discussion says O-glycosylation can affect protein structure and that APOE may be more heavily glycosylated inside cells than after secretion. It does not compare cellular APOE with recombinant protein or address the structural consequences of the L28P mutation. (LLM, conf=0.84)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Harold, D., Abraham, R., Hollingworth, P., Sims, R., Gerrish, A., Hamshere, M. L., Pahwa, J. S., Moskvina, V., Dowzell, K., Williams, A., et al. (2009) · Nature Genetics · doi:10.1038/ng.440 · Cited by 3,326 · see citing works
Human apolipoprotein E. The complete amino acid sequence
Rall, S. C., Weisgraber, K. H., & Mahley, R. W. (1982) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)34702-1 · Cited by 741 · see citing works
Astrocytes synthesize apolipoprotein E and metabolize apolipoprotein E-containing lipoproteins
Pitas, R. E., Boyles, J. K., Lee, S. H., Foss, D., & Mahley, R. W. (1987) · Biochimica et Biophysica Acta (BBA) - Lipids and Lipid Metabolism · doi:10.1016/0005-2760(87)90295-5 · Cited by 693 · see citing works
Transcriptional profiling of aging in human muscle reveals a common aging signature
Zahn, J. M., Sonu, R., Vogel, H., Crane, E., Mazan-Mamczarz, K., Rabkin, R., Davis, R. W., Becker, K. G., Owen, A. B., & Kim, S. K. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020115 · Cited by 351 · see citing works
Nascent astrocyte particles differ from lipoproteins in CSF
LaDu, M. J., Gilligan, S. M., Lukens, J. R., Cabana, V. G., Reardon, C. A., Van Eldik, L. J., & Holtzman, D. M. (1998) · Journal of Neurochemistry · doi:10.1046/j.1471-4159.1998.70052070.x · Cited by 285 · cited 2× · see citing works
“HDL from the brain is elliptical and small (8–15 nm) while in the CSF (Pitas et al. 1987b; LaDu et al. 1998; Koch et al. 2001) it is larger (12– 20 nm, with a small population up to 30 nm) and spherical.”
BackgroundWesterlund, J. A., & Weisgraber, K. H. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)82318-3 · Cited by 164 · see citing works
Apolipoprotein E Genotype Affects Size of ApoE Complexes in Cerebrospinal Fluid
Heinsinger, N. M., Gachechiladze, M. A., & Rebeck, G. W. (2016) · Journal of Neuropathology & Experimental Neurology · doi:10.1093/jnen/nlw067 · Cited by 74 · see citing works
Self-citation
Flagged first, then by citations
Research works printed but not linked: 53
- Achariyar TM, Li B, Peng W, Verghese PB, Shi Y, McConnell E, Benraiss A, Kasper T, Song W, Takana T et al. 2016. Glymphatic distribution of CSF-derived apoE into brain is isoform specific and suppressed during sleep deprivation. Mol Neurodegener. 11:74. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ali L, Flowers SA, Jin C, Bennet EP, Ekwall AK, Karlsson NG. 2014. The O-glycomap of lubricin, a novel mucin responsible for joint lubrication, identified by site-specific glycopeptide analysis. Mol Cell Proteomics. 13:3396–3409. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Beisiegel U. 1998. Lipoprotein metabolism. Eur Heart Journal. 19(Suppl A):A20–A23. [PubMed] [Google Scholar]
- Bennett EP, Mandel U, Clausen H, Gerken TA, Fritz TA, Tabak LA. 2012. Control of mucin-type O-glycosylation: A classification of the polypeptide GalNAc-transferase gene family. Glycobiology. 22:736–756. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. 2000. The Protein Data Bank. Nucleic Acids Res. 28:235–242. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brockhausen I, Schachter H, Stanley P. 2009. O-GalNAc glycans In: Varki A, Cummings RD, Esko JD, Freeze HH, Stanley P, Bertozzi CR, Hart GW, Etzler ME, editors. Essentials of glycobiology. Cold Spring Harbor (NY). [PubMed] [Google Scholar]
- Chaffey PK, Guan X, Chen C, Ruan Y, Wang X, Tran AH, Koelsch TN, Cui Q, Feng Y, Tan Z. 2017. Structural insight into the stabilizing effect of O-glycosylation. Biochemistry. [DOI] [PubMed] [Google Scholar]
- Chaudhury NM, Proctor GB, Karlsson NG, Carpenter GH, Flowers SA. 2016. Reduced mucin-7 (Muc7) sialylation and altered saliva rheology in Sjogren’s syndrome associated oral dryness. Mol Cell Proteomics. 15:1048–1059. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen J, Li Q, Wang J. 2011. Topology of human apolipoprotein E3 uniquely regulates its diverse biological functions. Proc Natl Acad Sci U S A. 108:14813–14818. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Corder EH, Saunders AM, Strittmatter WJ, Schmechel DE, Gaskell PC, Small GW, Roses AD, Haines JL, Pericak-Vance MA. 1993. Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer’s disease in late onset families. Science. 261:921–923. [DOI] [PubMed] [Google Scholar]
- Dawson PA, Rudel LL. 1999. Intestinal cholesterol absorption. Curr Opin Lipidol. 10:315–320. [DOI] [PubMed] [Google Scholar]
- Fagan AM, Mintun MA, Mach RH, Lee SY, Dence CS, Shah AR, LaRossa GN, Spinner ML, Klunk WE, Mathis CA et al. 2006. Inverse relation between in vivo amyloid imaging load and cerebrospinal fluid Abeta42 in humans. Ann Neurol. 59:512–519. [DOI] [PubMed] [Google Scholar]
- Frieden C, Wang H, Ho CMW. 2017. A mechanism for lipid binding to apoE and the role of intrinsically disordered regions coupled to domain-domain interactions. Proc Natl Acad Sci U S A. 114:6292–6297. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Garai K, Mustafi SM, Baban B, Frieden C. 2010. Structural differences between apolipoprotein E3 and E4 as measured by (19) F NMR. Protein Sci. 19:66–74. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Greis KD, Hart GW. 1998. Analytical methods for the study of O-GlcNAc glycoproteins and glycopeptides In: Hounsell EF, editor. Methods in molecular biology, glycoanalysis protocols. Totowa (NJ): Humana Press; p. 19–35. [DOI] [PubMed] [Google Scholar]
- Grinstead JS, Koganty RR, Krantz MJ, Longenecker BM, Campbell AP. 2002. Effect of glycosylation on MUC1 humoral immune recognition: NMR studies of MUC1 glycopeptide-antibody interactions. Biochemistry. 41:9946–9961. [DOI] [PubMed] [Google Scholar]
- Halim A, Ruetschi U, Larson G, Nilsson J. 2013. LC-MS/MS characterization of O-glycosylation sites and glycan structures of human cerebrospinal fluid glycoproteins. J Proteome Res. 12:573–584. [DOI] [PubMed] [Google Scholar]
- Hubbard SJ, Thornton JM. 1993. ‘NACCESS’, computer program,. Hubbard, S.J. and Thornton, J.M. University College London: Department of Biochemistry and Molecular Biology. [Google Scholar]
- Humphrey W, Dalke A, Schulten K. 1996. VMD: Visual molecular dynamics. J Mol Graph. 14(33–38):27–38. [DOI] [PubMed] [Google Scholar]
- Itakura Y, Sasaki N, Kami D, Gojo S, Umezawa A, Toyoda M. 2016. N- and O-glycan cell surface protein modifications associated with cellular senescence and human aging. Cell Biosci. 6:14. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ju T, Cummings RD. 2002. A unique molecular chaperone Cosmc required for activity of the mammalian core 1 beta 3-galactosyltransferase. Proc Natl Acad Sci U S A. 99:16613–16618. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kirschner KN, Yongye AB, Tschampel SM, Gonzalez-Outeirino J, Daniels CR, Foley BL, Woods RJ. 2008. GLYCAM06: a generalizable biomolecular force field. Carbohydrates. J Comput Chem. 29:622–655. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ko BJ, Brodbelt JS. 2015. Comparison of glycopeptide fragmentation by collision induced dissociation and ultraviolet photodissociation. Int J Mass Spectrom. 377:385–392. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Koch S, Donarski N, Goetze K, Kreckel M, Stuerenburg HJ, Buhmann C, Beisiegel U. 2001. Characterization of four lipoprotein classes in human cerebrospinal fluid. J Lipid Res. 42:1143–1151. [PubMed] [Google Scholar]
- Kockx M, Jessup W, Kritharides L. 2008. Regulation of endogenous apolipoprotein E secretion by macrophages. Arterioscler Thromb Vasc Biol. 28:1060–1067. [DOI] [PubMed] [Google Scholar]
- Kong Y, Joshi HJ, Schjoldager KT, Madsen TD, Gerken TA, Vester-Christensen MB, Wandall HH, Bennett EP, Levery SB, Vakhrushev SY et al. 2015. Probing polypeptide GalNAc-transferase isoform substrate specificities by in vitro analysis. Glycobiology. 25:55–65. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lalazar A, Weisgraber KH, Rall SC Jr, Giladi H, Innerarity TL, Levanon AZ, Boyles JK, Amit B, Gorecki M, Mahley RW et al. 1988. Site-specific mutagenesis of human apolipoprotein E. receptor binding activity of variants with single amino acid substitutions. J Biol Chem. 263:3542–3545. [PubMed] [Google Scholar]
- Lambert JC, Ibrahim-Verbaas CA, Harold D, Naj AC, Sims R, Bellenguez C, DeStafano AL, Bis JC, Beecham GW, Grenier-Boley B et al. 2013. Meta-analysis of 74,046 individuals identifies 11 new susceptibility loci for Alzheimer's disease. Nat Genet. 45:1452–1458. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lee Y, Kockx M, Raftery MJ, Jessup W, Griffith R, Kritharides L. 2010. Glycosylation and sialylation of macrophage-derived human apolipoprotein E analyzed by SDS-PAGE and mass spectrometry: Evidence for a novel site of glycosylation on Ser290. Mol Cell Proteomics. 9:1968–1981. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Maguire TM, Breen KC. 1995. A decrease in neural sialyltransferase activity in Alzheimer’s disease. Dementia. 6:185–190. [DOI] [PubMed] [Google Scholar]
- Maguire TM, Gillian AM, O'Mahony D, Coughlan CM, Dennihan A, Breen KC. 1994. A decrease in serum sialyltransferase levels in Alzheimer’s disease. Neurobiol Aging. 15:99–102. [DOI] [PubMed] [Google Scholar]
- Mahley RW. 1988. Apolipoprotein E: Cholesterol transport protein with expanding role in cell biology. Science. 240:622–630. [DOI] [PubMed] [Google Scholar]
- Mahley RW, Ji ZS. 1999. Remnant lipoprotein metabolism: Key pathways involving cell-surface heparan sulfate proteoglycans and apolipoprotein E. J Lipid Res. 40:1–16. [PubMed] [Google Scholar]
- Marmillot P, Rao MN, Liu QH, Lakshman MR. 1999. Desialylation of human apolipoprotein E decreases its binding to human high-density lipoprotein and its ability to deliver esterified cholesterol to the liver. Metabolism. 48:1184–1192. [DOI] [PubMed] [Google Scholar]
- Nguyen D, Dhanasekaran P, Nickel M, Nakatani R, Saito H, Phillips MC, Lund-Katz S. 2010. Molecular basis for the differences in lipid and lipoprotein binding properties of human apolipoproteins E3 and E4. Biochemistry. 49:10881–10889. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nilsson J, Ruetschi U, Halim A, Hesse C, Carlsohn E, Brinkmalm G, Larson G. 2009. Enrichment of glycopeptides for glycan structure and attachment site identification. Nat Methods. 6:809–811. [DOI] [PubMed] [Google Scholar]
- Otvos JD. 2002. Measurement of lipoprotein subclass profiles by nuclear magnetic resonance spectroscopy. Clin Lab. 48:171–180. [PubMed] [Google Scholar]
- Patel RY, Balaji PV. 2006. Identification of linkage-specific sequence motifs in sialyltransferases. Glycobiology. 16:108–116. [DOI] [PubMed] [Google Scholar]
- Patsch J. 1998. Influence of lipolysis on chylomicron clearance and HDL cholesterol levels. Eur Heart J. 19(Suppl H):H2–H6. [PubMed] [Google Scholar]
- Pitas RE, Boyles JK, Lee SH, Hui D, Weisgraber KH. 1987b. Lipoproteins and their receptors in the central nervous system. Characterization of the lipoproteins in cerebrospinal fluid and identification of apolipoprotein B,E (LDL) receptors in the brain. J Biol Chem. 262:14352–14360. [PubMed] [Google Scholar]
- Raman J, Guan Y, Perrine CL, Gerken TA, Tabak LA. 2012. UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferases: Completion of the family tree. Glycobiology. 22:768–777. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sakamoto T, Tanaka M, Vedhachalam C, Nickel M, Nguyen D, Dhanasekaran P, Phillips MC, Lund-Katz S, Saito H. 2008. Contributions of the carboxyl-terminal helical segment to the self-association and lipoprotein preferences of human apolipoprotein E3 and E4 isoforms. Biochemistry. 47:2968–2977. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schjoldager KT, Joshi HJ, Kong Y, Goth CK, King SL, Wandall HH, Bennett EP, Vakhrushev SY, Clausen H. 2015. Deconstruction of O-glycosylation--GalNAc-T isoforms direct distinct subsets of the O-glycoproteome. EMBO Rep. 16:1713–1722. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Segal MB. 2005. Fluid compartments of the central nervous system In: Zheng W, Chodobski A, editors. The blood-cerebrospinal fluid barrier. Boca Raton (FL): Taylor and Francis. [Google Scholar]
- Stavenhagen K, Hinneburg H, Thaysen-Andersen M, Hartmann L, Varon Silva D, Fuchser J, Kaspar S, Rapp E, Seeberger PH, Kolarich D. 2013. Quantitative mapping of glycoprotein micro-heterogeneity and macro-heterogeneity: An evaluation of mass spectrometry signal strengths using synthetic peptides and glycopeptides. J Mass Spectrom. 48:627–639. [DOI] [PubMed] [Google Scholar]
- Steentoft C, Vakhrushev SY, Vester-Christensen MB, Schjoldager KT, Kong Y, Bennett EP, Mandel U, Wandall H, Levery SB, Clausen H. 2011. Mining the O-glycoproteome using zinc-finger nuclease-glycoengineered SimpleCell lines. Nat Methods. 8:977–982. [DOI] [PubMed] [Google Scholar]
- Sutphen CL, Jasielec MS, Shah AR, Macy EM, Xiong C, Vlassenko AG, Benzinger TLS, Stoops EEJ, Vanderstichele HMJ, Brix B et al. 2015. Longitudinal cerebrospinal fluid biomarker changes in preclinical Alzheimer disease during middle age. JAMA Neurol. 72:1029–1042. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wernette-Hammond ME, Lauer SJ, Corsini A, Walker D, Taylor JM, Rall SC Jr. 1989. Glycosylation of human apolipoprotein E. The carbohydrate attachment site is threonine 194. J Biol Chem. 264:9094–9101. [PubMed] [Google Scholar]
- Woods-Group 2005-2019. GLYCAM-Web glycoprotein builder. Woods Group: Complex Carbohydrate Research Center, University of Georgia, Athens, GA. [Google Scholar]
- Wu L, Zhao L. 2016. ApoE2 and Alzheimer’s disease: Time to take a closer look. Neural Regen Res. 11:412–413. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Xu Q, Bernardo A, Walker D, Kanegawa T, Mahley RW, Huang Y. 2006. Profile and regulation of apolipoprotein E (ApoE) expression in the CNS in mice with targeting of green fluorescent protein gene to the ApoE locus. J Neurosci. 26:4985–4994. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yu Y, Kuang YL, Lei D, Zhai X, Zhang M, Krauss RM, Ren G. 2016. Polyhedral 3D structure of human plasma very low density lipoproteins by individual particle cryo-electron tomography1. J Lipid Res. 57:1879–1888. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zannis VI, vanderSpek J, Silverman D. 1986. Intracellular modifications of human apolipoprotein E. J Biol Chem. 261:13415–13421. [PubMed] [Google Scholar]
Cited by
Sorted by citations
Multifaceted roles of APOE in Alzheimer disease
Jackson, R. J., Hyman, B. T., & Serrano-Pozo, A. (2024) · Nature Reviews Neurology · doi:10.1038/s41582-024-00988-2 · Cited by 193 · see citing works
Implications of Glycosylation in Alzheimer’s Disease
Haukedal, H., & Freude, K. K. (2021) · Frontiers in Neuroscience · doi:10.3389/fnins.2020.625348 · Cited by 114 · see citing works
Jackson, R. J., Dierksmeier, S., Nishtar, M., Meltzer, J., Balduin, F., Beaumont, B., Fan, Z., Sergienko, E., Olson, S., Jackson, M. R., et al. (2026) · doi:10.64898/2026.06.09.730809
- Authors
- Flowers, S. A., Grant, O. C., Woods, R. J., & Rebeck, G. W.
- Affiliations
- Georgetown University (US)
- University of Georgia (US)
- Corresponding author
- Flowers, Sarah A
- Venue
- Glycobiology
- Publisher
- Oxford University Press (OUP)
- Published
- 2019-10-16
- Volume
- 30
- Issue
- 2
- Pages
- 74-85
- ISSN
- 0959-6658 (ISSN-L)
- 1460-2423
- PMC
- PMC7335482
- OpenAlex
- W2980885964
- Cited by
- 52
- References
- 7
- Citations by year
- 2026: 7 · 2025: 5 · 2024: 5 · 2023: 7 · 2022: 14 · 2021: 6 · 2020: 8
- FWCI
- 2.32
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- academic.oup.com/journals/pages/open_access/funder_policies/chorus/standard_publication_model (vor)
- Locations
- Glycobiology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health (R01 NS100714, U01 CA207824, P41 GM103390, R56 AG062305)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glycosylation and Glycoproteins Research
- Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
- Physical Sciences › Chemistry › Organic Chemistry › Carbohydrate Chemistry and Synthesis
- Keywords
- O-glycosylation, cerebrospinal fluid, plasma, lipid-binding domain, C-terminal loop, hinge domain, Alzheimer's disease, high-density lipoprotein, glycoforms
- MeSH terms
- Protein Domains, Aged, Alzheimer Disease, Apolipoproteins E, Female, Glycopeptides, Glycosylation, Humans, Male, Middle Aged
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review