The DOI matches its Crossref record; 34 of the 34 references it cites were found in a registry or an index.
Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF)
Open accessAbstract
An analysis of the sequence information contained in a compilation of published binding sites for E. coli integration host factor (IHF) was performed. The sequences of twenty-seven IHF sites were aligned; the base occurrences at each position, the information content, and an extended consensus sequence were obtained for the IHF site. The base occurrences at each position of the IHF site were used with a program written for the Apple Macintosh computers in order to determine the similarity scores for published IHF sites. A linear correlation was found to exist between the logarithm of IHF binding and functional data (relative free energies) and similarity scores for two groups of IHF sites. The MacTargsearch program and its potential usefulness in searching for other sites and predicting their relative activities is discussed.
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Citations
Cites
Compilation and analysis of Escherichia coli promoter DNA sequences
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Self-citationIn vitro insertional mutagenesis with a selectable DNA fragment
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Information content of binding sites on nucleotide sequences
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The pitch of chromatin DNA is reflected in its nucleotide sequence.
Trifonov, E. N., & Sussman, J. L. (1980) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.77.7.3816 · Cited by 585
Integration host factor: A protein for all reasons
Friedman, D. I. (1988) · Cell · doi:10.1016/0092-8674(88)90213-9 · Cited by 481
Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9
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Escherichia coli promoter sequences predict in vitro RNA polymerase selectivity
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Self-citationIdentifying protein-binding sites from unaligned DNA fragments.
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E. coli integration host factor binds to specific sites in DNA
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Cited by
Crystal Structure of an IHF-DNA Complex: A Protein-Induced DNA U-Turn
Rice, P. A., Yang, S.-W., Mizuuchi, K., & Nash, H. A. (1996) · Cell · doi:10.1016/s0092-8674(00)81824-3 · Cited by 802
SeqA: A negative modulator of replication initiation in E. coli
LU, M. (1994) · Cell · doi:10.1016/0092-8674(94)90156-2 · Cited by 508
Cyanobacterial hydrogenases: diversity, regulation and applications
Tamagnini, P., Leitão, E., Oliveira, P., Ferreira, D., Pinto, F., Harris, D. J., Heidorn, T., & Lindblad, P. (2007) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2007.00085.x · Cited by 367
Wu, J., & Weiss, B. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.9.2864-2871.1991 · Cited by 275
REYES, F., GAVIRA, M., CASTILLO, F., & MORENO-VIVIÁN, C. (1998) · Biochemical Journal · doi:10.1042/bj3310897 · Cited by 56
Metadata
- Authors
- Goodrich, J. A., Schwartz, M. L., & McClure, W. R.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 1990
- Volume
- 18
- Issue
- 17
- Pages
- 4993-5000
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2099105015
- Cited by
- 287
- References
- 34
- FWCI
- 7.56
- Type
- journal article
- Language
- en
- Open access
- bronze
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- Goodrich, J. A., Schwartz, M. L., & McClure, W. R. (1990). Searching for and predicting the activity of sites for DNA binding proteins: compilation and analysis of the binding sites for Escherichia coli integration host factor (IHF). Nucleic Acids Research. https://doi.org/10.1093/nar/18.17.4993
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
