The DOI matches its Crossref record; 12 of the 12 references it cites were found in a registry or an index.
RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12
Open accessAbstract
RegulonDB is a database on mechanisms of transcription regulation and operon organization in Escherichia coli K-12. The current version has considerably increased numbers of regulatory elements such as promoters, binding sites and terminators. The complete repertoire of known and predicted DNA-binding transcriptional regulators can be considered to be included in this version. The database now distinguishes different allosteric conformations of regulatory proteins indicating the one active in binding and regulating the different promoters. A new set of operon predictions has been incorporated. The relational design has been modified accordingly. Furthermore, a major improvement is a graphic display enabling browsing of the database with a Java-based graphic user interface with three zoom-levels connected to properties of each chromosomal element. The purpose of these modifications is to make RegulonDB a useful tool and control set for transcriptome experiments. RegulonDB can be accessed on the web at the URL: http://www.cifn.unam.mx/Computational_Biology/++ +regulondb/
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The Complete Genome Sequence of Escherichia coli K-12
Blattner, F. R., Plunkett, G., Bloch, C. A., Perna, N. T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C. K., Mayhew, G. F., et al. (1997) · Science · doi:10.1126/science.277.5331.1453 · Cited by 7,452
Regulation of Gene Expression in Escherichia coli
Lin, E. C. C., & Lynch, A. S. (1996) · Springer eBooks · doi:10.1007/978-1-4684-8601-8 · Cited by 392
Operons in Escherichia coli : Genomic analyses and predictions
Salgado, H., Moreno-Hagelsieb, G., Smith, T. F., & Collado-Vides, J. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.110147297 · Cited by 382
Self-citationFunctions of the gene products of Escherichia coli
Riley, M. A. (1993) · Microbiological Reviews · doi:10.1128/mmbr.57.4.862-952.1993 · Cited by 367
The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12
Perez-Rueda, E. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.8.1838 · Cited by 309
DNA Looping and Unlooping by AraC Protein
Lobell, R. B., & Schleif, R. F. (1990) · Science · doi:10.1126/science.2237403 · Cited by 241
RegulonDB: a database on transcriptional regulation in Escherichia coli
Huerta, A. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.1.55 · Cited by 197
Kinetics of expression of the Escherichia coli cad operon as a function of pH and lysine
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Self-citationRegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12
Salgado, H. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.65 · Cited by 68
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PROMO: detection of known transcription regulatory elements using species-tailored searches
Messeguer, X., Escudero, R., Farré, D., Núñez, O., Martı́nez, J., & Albà, M. M. (2002) · Bioinformatics · doi:10.1093/bioinformatics/18.2.333 · Cited by 1,369
The regulation of bacterial transcription initiation
Browning, D. F., & Busby, S. J. W. (2004) · Nature Reviews Microbiology · doi:10.1038/nrmicro787 · Cited by 1,019
The Coherent Feedforward Loop Serves as a Sign-sensitive Delay Element in Transcription Networks
Mangan, S., Zaslaver, A., & Alon, U. (2003) · Journal of Molecular Biology · doi:10.1016/j.jmb.2003.09.049 · Cited by 553
Identifying global regulators in transcriptional regulatory networks in bacteria
Martı́nez-Antonio, A., & Collado-Vides, J. (2003) · Current Opinion in Microbiology · doi:10.1016/j.mib.2003.09.002 · Cited by 526
Körner, H., Sofia, H. J., & Zumft, W. G. (2003) · FEMS Microbiology Reviews · doi:10.1016/s0168-6445(03)00066-4 · Cited by 461
Metadata
- Authors
- Salgado, H.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2001-01-01
- Volume
- 29
- Issue
- 1
- Pages
- 72-74
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2154199509
- Cited by
- 255
- References
- 12
- FWCI
- 23.12
- Type
- journal article
- Language
- en
- Open access
- green
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