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The Transcriptional Program in the Response of Human Fibroblasts to Serum

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Long-Term Reduction in Poly(dimethylsiloxane) Surface Hydrophobicity via Cold-Plasma Treatments

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Profiling of differentially expressed apoptosis-related genes by cDNA arrays in human cord blood CD34+ cells treated with etoposide

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Pattern Triggered Immunity (PTI) in Tobacco: Isolation of Activated Genes Suggests Role of the Phenylpropanoid Pathway in Inhibition of Bacterial Pathogens

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Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease

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Global Transcriptomic Analysis of Human Neuroblastoma Cells in Response to Enterovirus Type 71 Infection

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Microarray Analysis Demonstrates a Role for Slug in Epidermal Homeostasis

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Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis

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Transcriptional reprogramming and phenotypical changes associated with growth ofXanthomonas campestrispv.campestrisin cabbage xylem sap

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Temporal Network Based Analysis of Cell Specific Vein Graft Transcriptome Defines Key Pathways and Hub Genes in Implantation Injury

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Differential expression of genes encoding CD30L and P-selectin in cattle with Johne's disease: Progress toward a diagnostic gene expression signature

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Temporal- and dose-dependent hepatic gene expression changes in immature ovariectomized mice following exposure to ethynyl estradiol

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Methodological study of affine transformations of gene expression data with proposed robust non-parametric multi-dimensional normalization method

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Validating nutrient-related gene expression changes from microarrays using RT2 PCR-arrays

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Gene expression analysis of embryonic stem cells expressing VE-cadherin (CD144) during endothelial differentiation

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Genomic expression pathways associated with brain injury after cardiopulmonary bypass

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Yellow pages to the transcriptome

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Dynamic association rules for gene expression data analysis

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Decrease in airway mucous gene expression caused by treatment with anti-tumor necrosis factor α in a murine model of allergic asthma

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The Role of the Transcription Factor SIM2 in Prostate Cancer

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A comparison of global gene expression measurement technologies in Arabidopsis thaliana

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Transcriptional Profiling of Rhesus Monkey Embryonic Stem Cells1

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Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease

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Novel Nipah Virus Immune-Antagonism Strategy Revealed by Experimental and Computational Study

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Effects of the aryl hydrocarbon receptor agonist 3-methylcholanthrene on the 17β-estradiol regulated mRNA transcriptome of the rat uterus

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TRAM1 Participates in Human Cytomegalovirus US2- and US11-mediated Dislocation of an Endoplasmic Reticulum Membrane Glycoprotein

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Preliminary array analysis reveals novel genes regulated by ovarian steroids in the monkey raphe region

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Digital quantitative measurements of gene expression

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Environmental Factors Affecting the Expression of pilAB as Well as the Proteome and Transcriptome of the Grass Endophyte Azoarcus sp. Strain BH72

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Gene Expression Profiling Utilizing Microarray Technology and RT-PCR

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Absolute expression values for mouse transcripts: re‐annotation of the READ expression database by the use of CAGE and EST sequence tags

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Limited redundancy in genes regulated by Cyclin T2 and Cyclin T1

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Identification of candidate maternal-effect genes through comparison of multiple microarray data sets

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Expression profiling and Ingenuity biological function analyses of interleukin-6- versus nerve growth factor-stimulated PC12 cells

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Development of Pharmacogenomic Markers to Select Preoperative Chemotherapy for Breast Cancer

Pusztai, L., Symmans, W. F., & Hortobágyi, G. N. (2005) · Breast Cancer · doi:10.1007/bf02966817 · Cited by 22

Combining genome-wide and targeted gene expression profiling in drug discovery: microarrays and real-time PCR

Brazeau, D. A. (2004) · Drug Discovery Today · doi:10.1016/s1359-6446(04)03231-3 · Cited by 22

Binding of the WASP/N-WASP-Interacting Protein WIP to Actin Regulates Focal Adhesion Assembly and Adhesion

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A Molecular Basis for Human Embryonic Stem Cell Pluripotency

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What Is the Best Reference RNA? And Other Questions Regarding the Design and Analysis of Two-color Microarray Experiments

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Prophylaxis with cationic liposome–DNA complexes protects hamsters from phleboviral disease: Importance of liposomal delivery and CpG motifs

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Integrative Biological Analysis For Neuropsychopharmacology

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Surface Lipoproteome of Mycoplasma Hominis PG21 and Differential Expression After Contact with Human Dendritic Cells

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Distinct temporal patterns of Transaldolase 1 gene expression in future migratory and sedentary brown trout (Salmo trutta)

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Global analysis of gene expression changes during retinoic acid-induced growth arrest and differentiation of melanoma: comparison to differentially expressed genes in melanocytes vs melanoma

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Model-based analysis of non-specific binding for background correction of high-density oligonucleotide microarrays

Furusawa, C., Ono, N., Suzuki, S., 縣, 朋., Shimizu, H., & Yomo, T. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn570 · Cited by 19

[5] Standards in Gene Expression Microarray Experiments

Salit, M. (2006) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(06)11005-8 · Cited by 19

A genomic view of lymphocyte development

Hoffmann, R. F. G., & Melchers, F. (2003) · Current Opinion in Immunology · doi:10.1016/s0952-7915(03)00047-5 · Cited by 19

Transcriptional Response of Selenopolypeptide Genes and Selenocysteine Biosynthesis Machinery Genes in Escherichia coli during Selenite Reduction

Tetteh, A. Y., Sun, K. H., Hung, C., Kittur, F. S., Ibeanu, G. C., Williams, D., & Xie, J. (2014) · International Journal of Microbiology · doi:10.1155/2014/394835 · Cited by 18

Screening candidate genes related to tenderness trait in Qinchuan cattle by genome array

Zhang, Y., Zan, L., & Wang, H. (2010) · Molecular Biology Reports · doi:10.1007/s11033-010-0323-8 · Cited by 18

Global gene annotation analysis and transcriptional profiling identify key biological modules in hypoxic pulmonary hypertension

Gharib, S. A., Luchtel, D. L., Madtes, D. K., & Glenny, R. W. (2005) · Physiological Genomics · doi:10.1152/physiolgenomics.00265.2004 · Cited by 18

Limited agreement among three global gene expression methods highlights the requirement for non-global validation

Haverty, P. M., Hsiao, L., Gullans, S. R., Hansen, U. M., & Weng, Z. (2004) · Bioinformatics · doi:10.1093/bioinformatics/bth421 · Cited by 18

Effects of ozone exposure mediated by BEAS-2B cells on T cells activation: a possible link between environment and asthma

Wu, D. (2013) · Asian Pacific Journal of Allergy and Immunology · doi:10.12932/ap0316.32.1.2014 · Cited by 17

Dissecting tBHQ induced ARE-driven gene expression through long and short oligonucleotide arrays

Li, J., Spletter, M. L., & Johnson, J. A. (2004) · Physiological Genomics · doi:10.1152/physiolgenomics.00214.2004 · Cited by 17

Gene expression profiling of granulosa cells from PCOS patients following varying doses of human chorionic gonadotropin

Coşkun, S., Otu, H. H., Awartani, K. A., Al-Alwan, L. A., Hassan, S. S. M., Al-Mayman, H., Kaya, N., & Inan, M. S. (2013) · Journal of Assisted Reproduction and Genetics · doi:10.1007/s10815-013-9935-y · Cited by 17

DCUN1D1 Is an Essential Regulator of Prostate Cancer Proliferation and Tumour Growth That Acts through Neddylation of Cullin 1, 3, 4A and 5 and Deregulation of Wnt/Catenin Pathway

Vava, A., Paccez, J. D., Wang, Y., Gu, X., Bhasin, M., Myers, M. P., Soares, N. C., Libermann, T. A., & Zerbini, L. F. (2023) · Cells · doi:10.3390/cells12151973 · Cited by 16

Elucidation of the Regulon and cis -Acting Regulatory Element of HrpB, the AraC-Type Regulator of a Plant Pathogen-Like Type III Secretion System in Burkholderia pseudomallei

Lipscomb, L., & Schell, M. A. (2011) · Journal of Bacteriology · doi:10.1128/jb.01379-10 · Cited by 16

Expression Profiling of Crystal-Induced Injury in Human Kidney Epithelial Cells

Liang, L., Chen, J., Vittal, R., Selvanayagam, Z., McAteer, J. A., Deng, L., Tischfield, J. A., Chin, K., & Sahota, A. S. (2005) · Nephron Physiology · doi:10.1159/000090503 · Cited by 16

Differentially expressed genes in skeletal muscle tissues from castrated Qinchuan cattle males compared with those from intact males

Zhang, Y., Zan, L., Wang, H.-B., Qing, L., Wu, K.-X., Quan, S.-A., Li, C.-Q., Zhong, X., & Wang, C.-J. (2010) · Livestock Science · doi:10.1016/j.livsci.2010.06.070 · Cited by 16

Profiles of gene expression changes in L5178Y mouse lymphoma cells treated with methyl methanesulfonate and sodium chloride

Seidel, S. D. (2004) · Mutagenesis · doi:10.1093/mutage/geh027 · Cited by 16

Cocaine induced inflammatory response in human neuronal progenitor cells

Crawford, F., Wood, M., Wilson, S. E. J., Mathura, V. S., Hollen, T. R., Geall, F., Kolippakkam, D. N., & MULLAN, M. J. (2006) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2006.03760.x · Cited by 16

Comparative Microarray Analysis of Basal Gene Expression in Mouse Hepa-1c1c7 Wild-Type and Mutant Cell Lines

Fong, C. J., Burgoon, L. D., & Zacharewski, T. R. (2005) · Toxicological Sciences · doi:10.1093/toxsci/kfi194 · Cited by 16

Cross-Platform Comparison of Microarray-Based Multiple-Class Prediction

Fan, X., Shao, L., Fang, H., Tong, W., & Cheng, Y. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016067 · Cited by 15

Clinical Application of a Modular Genomics Technique in Systemic Lupus Erythematosus: Progress towards Precision Medicine

Zollars, E. S., Courtney, S. M., Wolf, B. J., Allaire, N., Ranger, A. M., Hardiman, G., & Petri, M. (2016) · International Journal of Genomics · doi:10.1155/2016/7862962 · Cited by 15

A human ImmunoChip cDNA microarray provides a comprehensive tool to study immune responses

Nikula, T., West, A., Katajamaa, M., Lönnberg, T., Sara, R., Aittokallio, T. A., Nevalainen, O., & Lahesmaa, R. (2005) · Journal of Immunological Methods · doi:10.1016/j.jim.2005.06.004 · Cited by 15

Gene Expression Characterization of HPV Positive Head and Neck Cancer to Predict Response to Chemoradiation

Thibodeau, B. J., Geddes, T. J., Fortier, L. E., Ahmed, S. I., Pruetz, B. L., Wobb, J., Chen, P., Wilson, G. D., & Åkervall, J. (2014) · Head and Neck Pathology · doi:10.1007/s12105-014-0597-6 · Cited by 15

Gene Expression Dose-Response of Liver with a Genotoxic and Nongenotoxic Carcinogen

Seidel, S. D., Stott, W. T., Kan, H. L., Sparrow, B., & Gollapudi, B. B. (2006) · International Journal of Toxicology · doi:10.1080/10915810500488429 · Cited by 15

Gene-Expression Signatures in Oncology Diagnostics

Mazumder, A., & Wang, Y. (2006) · Pharmacogenomics · doi:10.2217/14622416.7.8.1167 · Cited by 15

Differential expression and detection of transcripts in sweetpotato (Ipomoea batatas (L.) Lam.) using cDNA microarrays

McGregor, C. (2022) · doi:10.31390/gradschool_dissertations.3754 · Cited by 15

Molecular investigation of the effects of lindane in rat hepatocytes: microarray and mechanistic studies.

Zucchini-Pascal, N., de Sousa, G., Pizzol, J., & Rahmani, R. (2011) · Food and Chemical Toxicology · doi:10.1016/j.fct.2011.09.033 · Cited by 14

Combining transcriptional datasets using the generalized singular value decomposition

SCHREIBER, A. W., Shirley, N. J., Burton, R. A., & Fincher, G. B. (2008) · BMC Bioinformatics · doi:10.1186/1471-2105-9-335 · Cited by 14

Expression Comparison of Oil Biosynthesis Genes in Oil Palm Mesocarp Tissue Using Custom Array

Wong, Y., Kwong, Q. B., Lee, H., Ong, C. K., Mayes, S., Chew, F. T., Appleton, D., & Kulaveerasingam, H. (2014) · Microarrays · doi:10.3390/microarrays3040263 · Cited by 15

Global expression analysis of the response to microaerobiosis reveals an important cue for endophytic establishment of Azoarcus sp. BH72

Sarkar, A., Marszałkowska, M., Schafer, M. K.-H., Pees, T., Klingenberg, H., Macht, F., & Reinhold‐Hurek, B. (2016) · Environmental Microbiology · doi:10.1111/1462-2920.13569 · Cited by 15

Comparing Microarray Studies

Suárez‐Fariñas, M., & Magnasco, M. O. (2007) · Methods in molecular biology · doi:10.1007/978-1-59745-390-5_8 · Cited by 14

DNA Microarrays: Recent Developments and Applications to the Study of Pituitary Tissues

Qian, X., Scheithauer, B. W., Kovács, K., & Lloyd, R. V. (2005) · Endocrine · doi:10.1385/endo:28:1:049 · Cited by 14

Estimating a Structured Covariance Matrix From Multilab Measurements in High-Throughput Biology

Franks, A. M., Csárdi, G., Drummond, D. A., & Airoldi, E. M. (2014) · Journal of the American Statistical Association · doi:10.1080/01621459.2014.964404 · Cited by 11

MAID : An effect size based model for microarray data integration across laboratories and platforms

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A highly sensitive and multiplexed method for focused transcript analysis

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Secretome analysis of microarray data reveals extracellular events associated with proliferative potential in a cell line model of breast disease

Dombkowski, A. A., Cukovic, D., & NOVAK, R. F. (2005) · Cancer Letters · doi:10.1016/j.canlet.2005.10.008 · Cited by 13

Construction and validation of the APOCHIP, a spotted oligo-microarray for the study of beta-cell apoptosis

Magnusson, N. E., Cardozo, A. K., Kruhøffer, M., Eizirik, D. L., Orntoft, T. F., & Jensen, J. L. (2005) · BMC Bioinformatics · doi:10.1186/1471-2105-6-311 · Cited by 13

GeneHopper: a web-based search engine to link gene-expression platforms through GenBank accession numbers

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Cellular acclimation strategies of a minimal picocyanobacterium to phosphate stress

Fuszard, M. A., Wright, P. C., & Biggs, C. A. (2010) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2010.01942.x · Cited by 12

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