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The Transcriptional Program in the Response of Human Fibroblasts to Serum

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Molecular insights into the pleiotropic effects of plasma on ex vivo–expanded T cells using DNA-microarray analysis

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Improving the prediction of the clinical outcome of breast cancer using evolutionary algorithms

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Development of a microarray assay that measures hybridization stoichiometry in moles

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The organic osmolyte betaine induces keratin 2 expression in rat epidermal keratinocytes — A genome-wide study in UVB irradiated organotypic 3D cultures

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Microarray analysis of genes associated with cell surface NIS protein levels in breast cancer

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Expression profiling of signature gene sets with trinucleotide threading

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Application of a correlation correction factor in a microarray cross-platform reproducibility study

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Comparison of Two Probe Preparation Methods Using Long Oligonucleotide Microarrays

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Three-color cDNA microarrays with prehybridization quality control yield gene expression data comparable to that of commercial platforms

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Kinetic Effects on Signal Normalization in Oligonucleotide Microchips with Labeled Immobilized Probes

Pan’kov, S. V., Chechetkin, V. R., Somova, O. G., Antonova, O. V., Moiseeva, O. V., Prokopenko, D., Yurasov, R. A., Gryadunov, D. A., & Chudinov, A. V. (2009) · Journal of Biomolecular Structure and Dynamics · doi:10.1080/07391102.2009.10507312 · Cited by 8

Multiple Lab Comparison of Microarray Platforms

Irizarry, R. A. (2004) · Collection of Biostatistics Research Archive · Cited by 8

Transcriptome Sequencing (RNA-Seq)

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Gene expression in Sinclair swine with malignant melanoma

Okomo‐Adhiambo, M., Rink, A., Rauw, W. M., & Gomez‐Raya, L. (2011) · animal · doi:10.1017/s1751731111001637 · Cited by 7

Low-level analysis of microarray data

Bengtsson, H. L. (2004) · Lund University Publications (Lund University) · Cited by 7

Gene Expression Data and Survival Analysis

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Identifying Differentially Expressed Genes via Weighted Rank Aggregation

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A Microarray Analysis of Potential Genes Underlying the Neurosensitivity of Mice to Propofol

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Optimizing design of two-stage experiments for transcriptional profiling

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Adequate design of customized cDNA macroarray for convenient multiple gene expression analysis

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DNA microarray analysis of chromosomal susceptibility regions to identify candidate genes for allergic disease: A pilot study

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Effector Overlap between the lac and mel Operons of Escherichia coli: Induction of the mel Operon with β-Galactosides

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Apoptosis in human polymorphonuclear leukocytes: searching for a genetic roadmap.

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Behind the Scenes: Planning a Multispecies Microarray Experiment

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Analysis of hybridization on the molecular barcode GeneChip microarray

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Interferon-β and interleukin-6 exert opposing effects on Foxp3 acetylation to control regulatory T cell induction

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Microarray Analysis of Undifferentiated and Differentiated Human Pluripotent Stem Cells

Synnergren, J., & Sartipy, P. (2011) · InTech eBooks · doi:10.5772/14354 · Cited by 4

Small-molecule TIP60 inhibitors enhance regulatory T cell induction through TIP60-P300 acetylation crosstalk

Fueyo‐González, F., Vilanova, G., Ningoo, M., Marjanović, N., Gonzalez‐Vera, J. A., Orte, Á., & Fribourg, M. (2023) · iScience · doi:10.1016/j.isci.2023.108491 · Cited by 4

Transcriptome Sequencing (RNA-Seq)

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Designing microarray oligonucleotide probes

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Avoidance of nonspecific hybridization by employing oligonucleotide micro-arrays generated from hydrolysis polymerase chain reaction probe sequences

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Microarray Platforms: Introduction and Application to Neurobiology

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Microarray-Based Technology: Basic Principles, Advantages and Limitations

Bakalova, R., Ewis, A. A., & Baba, Y. (2006) · Encyclopedia of Molecular Cell Biology and Molecular Medicine · doi:10.1002/3527600906.mcb.200400093 · Cited by 4

Analysing microarray data using modular regulation analysis

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Global expression analysis of Deinococcus radiodurans' response to ionizing radiation: irrE is a novel regulator of this response

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An Adaptive Approach for Integration Analysis of Multiple Gene Expression Datasets

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The effect of replicate number and image analysis method on sweetpotato [Ipomoea batatas (L.) Lam.] cDNA microarray results

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Excitement and Realities in Microarray Analysis of the Biological Effects of Polyphenols

Barnes, S., & Allison, D. B. (2004) · Pharmaceutical Biology · doi:10.3109/13880200490893465 · Cited by 3

Construction and use of gene expression covariation matrix

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Utilization of Microarray Platforms in Clinical Practice

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Quantitative quality control of microarray experiments: toward accurate gene expression measurements

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Quality assessment for short oligonucleotide microarray dataPreprint

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Meta-Analysis and Gene Set Analysis of Archived Microarrays Suggest Implication of the Spliceosome in Metastatic and Hypoxic Phenotypes

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Aprotinin Attenuates Genomic Expression Variability Following Cardiac Surgery

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Overview: Global Genomic Approaches to the Iron-Regulated Proteome

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Research on Key Problem of Intelligent Test System for Solenoid Valve

Jiang, Y., Liu, H., Luo, Z., & Chen, X. (2008) · International Conference on Intelligent Networks and Intelligent Systems · doi:10.1109/icinis.2008.39 · Cited by 2

High Sensitivity Expression Profiling

Ramakrishnan, R., Bao, P., & Müller, U. R. (2005) · Biological and medical physics series · doi:10.1007/3-540-26578-3_11 · Cited by 2

Comparability of Microarray Experiments from the Instrument and the Sample Site and Approaches Towards Standardization

Nietfeld, W. (2008) · Springer series on fluorescence · doi:10.1007/4243_2008_033 · Cited by 2

Detection of HBV, HCV and HBV YMDD mutants by DNA microarray

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Design and Analysis of Microarray Studies for Obesity Research

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Exploratory Visual Analysis of Statistical Results from Microarray Experiments Comparing High and Low Grade Glioma

Reif, D. M., Israel, M. A., & Moore, J. H. (2007) · Cancer Informatics · doi:10.1177/117693510700500004 · Cited by 2

Genomics, Proteomics, and Neurology

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Is It Time to Trade “Wet-Work” for Network?

Szállási, Z. (2003) · Lecture notes in computer science · doi:10.1007/978-3-540-39907-0_51 · Cited by 1

Transcriptional profiling of human embryonic stem cells and their functional derivatives

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Report on the Workshop “New Technologies in Stem Cell Research,” Society for Pediatric Research, San Francisco, California, April 29, 2006

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Oncogenes and prognosis in childhood T-cell acute lymphoblastic leukaemia

Gottardo, N. G. (2008) · UWA Profiles and Research Repository (University of Western Australia) · Cited by 1

Statistical Methods in Cardiac Gene Expression Profiling

Kong, S. W. (2007) · Methods in molecular biology · doi:10.1007/978-1-59745-030-0_5 · Cited by 1

Comparative Studies Using cDNA vs. Oligonucleotide Arrays

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Phosphate regulation in Streptomyces coelicolor and Streptomyces lividans: transcriptomic analysis of phoP and Ppk mutants.

Cattini, N. (2007) · Surrey Research Insight Open Access (The University of Surrey) · Cited by 1

The Characterization of Nipah Virus V and W proteins

Guenzel, C. A. (2009) · Online Publication Service of Würzburg University (Würzburg University) · Cited by 1

Genomic and peptidomic characterization of the developing avian brain.

Scholz, B. (2008) · Uppsala University Publications (Uppsala University) · Cited by 1

Design and Analysis of Microarray Studies for Obesity Research

Kim, K., DeLuca, M., Page, G. P., St‐Onge, M., Zhang, K., Allison, D. B., & Heymsfield, S. B. (2004) · Nutrition and disease prevention · doi:10.1201/9780203025925.ch7 · Cited by 1

Microarrays and quantitative real-time reverse transcriptase–polymerase chain reaction

Wurmbach, E. (2009) · Cambridge University Press eBooks · doi:10.1017/cbo9780511818974.019 · Cited by 1

Molecular mechanisms of insecticide resistance in the glasshouse whitefly, Trialeurodes vaporariorum

Karatolos, N. (2011) · Rothamsted Repository (Rothamsted Repository) · Cited by 1

Gene Expression Arrays in Pancreatic Cancer Drug Discovery Research

Gawad, C. (2010) · Springer eBooks · doi:10.1007/978-1-4419-1160-5_6

Microarrays in molecular profiling of cancer - focus on head and neck squamous cell carcinoma

Järvinen, A. (2008) · Työväentutkimus Vuosikirja

Le transcriptome : un domaine d'application pour les statistiques, de nouveaux horizons pour la biologie

Carpentier, A.-S. (2006) · HAL

DNA Microarray Technology and Applications — An Overview

Quackenbush, J. F. (2007) · Wiley eBooks · doi:10.1002/9783527619368.ch24

Molecular Phenotyping: Gene Expression Profiling

Beckers, J. (2006) · Wiley eBooks · doi:10.1002/9783527611942.ch2

Testing microarray analysis methods with semi-synthetic data

Okoniewski, M. J., & Naudts, B. (2004) · Springer eBooks · doi:10.1007/978-3-540-39985-8_8

Molecular Pathology and Transcriptional Profiling in Early Drug Development

Liedtke, C., Pusztai, L., & Symmans, W. F. (2008) · doi:10.1002/9780470475959.ch3

Microfluidic Analysis and Parallel Confocal Detection of Single Molecules

Gösch, M. (2003) · Figshare

Brain Regeneration - in vitro and in vivo studies of exercise-related effects on brain plasticity

Bull, C. (2008) · Gothenburg University Publications Electronic Archive (Gothenburg University)

Gene Technology: Applications and Techniques

Bisen, P. S., Debnath, M., & Prasad, G. B. K. S. (2012) · Wiley eBooks · doi:10.1002/9781118311912.ch2

Taimepatogeenile Erwinia carotovora subsp. carotovora spetsiifilise mikrokiibi väljatöötamine

Laursoo, H. (2005) · DSpace repository (University of Tartu)

Development of an Integrated Instrument for Nucleic Acid Pyrosequencing Detection

Zhu, J. J., Shi, H. N., Cheng, J., Wei, X., & Lu, Z. H. (2006) · Key engineering materials · doi:10.4028/www.scientific.net/kem.315-316.469

Computational Analysis of Transcriptional Profiling in Dysmorphic Syndrome

Otu, H. H., Can, H., Kaya, N., Al-Alwan, L. A., Ozand, P. T., & Inan, M. S. (2007) · Signal Processing and Communications Applications Conference (SIU) · doi:10.1109/siu.2007.4298831

Comparison of High-Density Short Oligonucleotide Microarray Platforms

Tadesse, M. G., He, Q., Carroll, R. J., & Ramos, K. S. (2007) · Current Bioinformatics · doi:10.2174/157489307781662132

The development of a diagnostic gene chip for detecting five kinds of viruses in horses

Lai-hua, Z., Liang, C., Lu, C., Wu, H., Yuan-jie, Y., Feng-zhong, M., Wang, S., & Hong-guang, Y. (2006) · Chinese Journal of Agricultural Biotechnology · doi:10.1079/cjb2006112

Toxæmia apparently produced by Ascaris lumbricoides.

Higgs, F. W. (1909) · PubMed Central

ABC transporter modulation in acute myeloid leukemia. Studies from the leukemic stem cell perspective.

Raaijmakers, M. H. G. P. (2006) · Radboud Repository (Radboud University)

Estudo de candidatos a biomarcadores moleculares de prognóstico em carcinoma renal de células claras

Vilella-Arias, S. A. (2013) · Digital Library of Theses and Dissertations (Universidade de São Paulo) · doi:10.11606/t.46.2013.tde-20032014-075848

DETECTING CANCER-RELATED GENES AND GENE-GENE INTERACTIONS BY MACHINE LEARNING METHODS

Han, B. (2011) · KU ScholarWorks (The University of Kansas)

Text Mining applied to Molecular Biology

Jelier, R. (2008) · RePub (Erasmus University Rotterdam)

Metabolic engineering of deinococcus radiodurans based on computational analysis and functional genomics

Edwards, J. S. (2005) · doi:10.2172/836597

Optimisation of cDNA microarray tumour profiling and molecular analysis of epithelial ovarian cancer

van Laar, R. K. (2005) · Minerva Access (University of Melbourne)

Transgenic Adenocarcinoma of the Mouse Prostate: A Validated Model for the Identification and Characterization of Molecular Targets and The Evaluation of Therapeutic Agents

Morgenbesser, S. D. (2010) · Humana Press eBooks · doi:10.1007/978-1-60761-968-0_17

Predicting Treatment Response and the Role of the ISG15/USP18 Ubiquitin-like Signaling Pathway in Hepatitis C Viral Infection

Chen, L. (2011) · TSpace (University of Toronto)

UNIVERSIDADE ESTADUAL PAULISTA "JÚLIO DE MESQUITA FILHO" FACULDADE DE CIÊNCIAS AGRÁRIAS E VETERINÁRIAS CAMPUS DE JABOTICABAL ANÁLISE DA EXPRESSÃO DE GENES RELACIONADOS À RESISTÊNCIA A Meloidogyne javanica EM SOJA, ATRAVÉS DA TÉCNICA DE PCR EM TEMPO REAL

Morales, A. M. R., Gertrudes, E., Lemos, M., & Nepomuceno, A. L. (2007)

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Carpentier, A.-S. (2006)

Functional genomics analysis of the arabidopsis ABI5 bZIP transcription factor

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Comparative Genomics of Tissue Specific Gene Expression

Jegga, A. G., Kong, S., Zhang, J., Moseley, A. E., Gupta, A., Williams, S. S., Genter, M. B., & Aronow, B. J. (2007) · Springer eBooks · doi:10.1007/978-0-387-40049-5_24

Human Intestinal Epithelial Cells -Infected Cryptosporidium parvum in Modulation of Apoptotic Pathways

Rutherford, M. S., Enomoto, S., Liu, J., Deng, M., & Lancto, C. A. (2013)

Acquisition of Accurate Gene Expression Information from Microarray Measurements

Jia, S., Gao, S., Hessner, M. J., & Wang, X. (2007) · WORLD SCIENTIFIC eBooks · doi:10.1142/9789812790811_0013

A NOVEL STATISTICAL METHOD FOR MICROARRAY DATA INTEGRATION: APPLICATIONS TO CANCER RESEARCH

Xu, L. (2007)

platform combining droplets and magnetic tweezers: application to HER2 expression in cancer diagnosis

Ferraro, D., Teste, B., Serra, M., Viovy, J., & Descroix, S. (2016)

Caracterização molecular da Linhagem Pedra 2 de Saccharomyces cerevisiae sob condições de alto etanol em fermentadores industriais

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Assessment of interactions amoung viruses infecting sweetpotato

Kokkinos, C. D. (2006) · doi:10.31390/gradschool_dissertations.2830

Microarray-based Gene Expression Analysis of Endocrine Systems: Principles of Experimental Design and Interpretation

Jegga, A. G., Aronow, B. J., & Handwerger, S. (2007) · Humana Press eBooks · doi:10.1007/978-1-59745-309-7_1

Faculty Opinions recommendation of Cytokine response is determined by duration of receptor and signal transducers and activators of transcription 3 (STAT3) activation.

Takeuchi, T., & Kameda, H. (2013) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.717980799.793471802

Current Awareness on Comparative and Functional Genomics

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Current issues for DNA microarrays: platform comparison, double linear amplification, and universal RNA reference �

A, P. J. P., Cao, Y. A., Sun Young Lee, B., Jong-woo Kim, B., Mi Sook Chang, B., Rebecca Hart, B., & Sangdun Choi, B. (2013)

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays

Wang, Y., Bárbácioru, C., Hyland, F. C. L., Xiao, W., Hunkapiller, K., Blake, J., Chan, F., Gonzalez, C., Zhang, L., & Samaha, R. R. (2006) · BMC Genomics · doi:10.1186/1471-2164-7-59 · Cited by 306

Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR – how well do they correlate?

Dallas, P. B., Gottardo, N. G., Firth, M. J., Beesley, A. H., Hoffmann, K., Terry, P. A., Freitas, J. R., Boag, J. M., Cummings, A. J., & Kees, U. R. (2005) · BMC Genomics · doi:10.1186/1471-2164-6-59 · Cited by 341

A comparison of cDNA, oligonucleotide, and Affymetrix GeneChip gene expression microarray platforms.

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Comparison of the latest commercial short and long oligonucleotide microarray technologies

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