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The dynamic nature and territory of transcriptional machinery in the bacterial chromosome

Cagliero, C. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00497 · Cited by 29 · see citing works

Flexibility and Symmetry of Prokaryotic Genome Rearrangement Reveal Lineage-Associated Core-Gene-Defined Genome Organizational Frameworks

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Protein Localization Analysis of Essential Genes in Prokaryotes

Peng, C., & Gao, F. (2014) · Scientific Reports · doi:10.1038/srep06001 · Cited by 28 · see citing works

Selection for energy efficiency drives strand-biased gene distribution in prokaryotes

Gao, N., Lu, G., Lercher, M. J., & Chen, W. (2017) · Scientific Reports · doi:10.1038/s41598-017-11159-3 · Cited by 27 · see citing works

Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum

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Division-induced DNA double strand breaks in the chromosome terminus region of Escherichia coli lacking RecBCD DNA repair enzyme

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Determinants of Replication-Fork Pausing at tRNA Genes in Saccharomyces cerevisiae

Yeung, R., & Smith, D. J. (2020) · Genetics · doi:10.1534/genetics.120.303092 · Cited by 16 · see citing works

Comparative Analysis of Sequence Periodicity among Prokaryotic Genomes Points to Differences in Nucleoid Structure and a Relationship to Gene Expression

Mrázek, J. (2010) · Journal of Bacteriology · doi:10.1128/jb.00149-10 · Cited by 27 · see citing works

Integration of syntactic and semantic properties of the DNA code reveals chromosomes as thermodynamic machines converting energy into information

Muskhelishvili, G., & TRAVERS, A. A. (2013) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-013-1394-1 · Cited by 25 · see citing works

Strand-Specific RNA-Seq Reveals Ordered Patterns of Sense and Antisense Transcription in Bacillus anthracis

Passalacqua, K. D., Varadarajan, A., Weist, C., Ondov, B., Byrd, B., Read, T. D., & Bergman, N. H. (2012) · PLoS ONE · doi:10.1371/journal.pone.0043350 · Cited by 22 · see citing works

Clustering of gene ontology terms in genomes.

Tiirikka, T., Siermala, M., & Vihinen, M. (2014) · Gene · doi:10.1016/j.gene.2014.06.060 · Cited by 27 · see citing works

Nucleotide compositional asymmetry between the leading and lagging strands of eubacterial genomes

Qu, H., Wu, H., Zhang, T., Zhang, Z., Hu, S., & Yu, J. M. (2010) · Research in Microbiology · doi:10.1016/j.resmic.2010.09.015 · Cited by 22 · see citing works

Optimization of amino acid replacement costs by mutational pressure in bacterial genomes

Błażej, P., Mackiewicz, D., Grabińska, M., Wnętrzak, M., & Mackiewicz, P. (2017) · Scientific Reports · doi:10.1038/s41598-017-01130-7 · Cited by 22 · see citing works

Transcription-Replication Collisions—A Series of Unfortunate Events

Germain, C. S., Zhao, H., & Barlow, J. H. (2021) · Biomolecules · doi:10.3390/biom11081249 · Cited by 20 · see citing works

Distinct co-evolution patterns of genes associated to DNA polymerase III DnaE and PolC

Engelen, S., Vallenet, D., Médigue, C., & Danchin, A. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-69 · Cited by 22 · see citing works

Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes

Xavier, J. C., Patil, K. R., & Rocha, I. (2018) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1006556 · Cited by 20 · see citing works

Back to the Origin: Reconsidering Replication, Transcription, Epigenetics, and Cell Cycle Control

Evertts, A. G., & Coller, H. A. (2012) · Genes & Cancer · doi:10.1177/1947601912474891 · Cited by 20 · see citing works

Efficient Arrangement of the Replication Fork Trap for In Vitro Propagation of Monomeric Circular DNA in the Chromosome-Replication Cycle Reaction

Hasebe, T., Kouhei, N., Shiomi, H., & Su’etsugu, M. (2018) · Life · doi:10.3390/life8040043 · Cited by 20 · see citing works

Subtelomeres are fast-evolving regions of the Streptomyces linear chromosome

Lorenzi, J.-N., Lespinet, O., Leblond, P., & Thibessard, A. (2021) · Microbial Genomics · doi:10.1099/mgen.0.000525 · Cited by 20 · see citing works

Optimization of Mutation Pressure in Relation to Properties of Protein-Coding Sequences in Bacterial Genomes

Błażej, P., Miasojedow, B., Grabińska, M., & Mackiewicz, P. (2015) · PLoS ONE · doi:10.1371/journal.pone.0130411 · Cited by 20 · see citing works

Measures of Compositional Strand Bias Related to Replication Machinery and its Applications

Arakawa, K., & Tomita, M. (2012) · Current Genomics · doi:10.2174/138920212799034749 · Cited by 20 · see citing works

Specialized lineages of bacterial group II introns

Michel, F., Costa, M., Doucet, A. J., & Ferat, J. (2007) · Biochimie · doi:10.1016/j.biochi.2007.01.017 · Cited by 19 · see citing works

Conserved patterns in bacterial genomes: A conundrum physically tailored by evolutionary tinkering

Junier, I. (2014) · Comput. Biol. Chem. · doi:10.1016/j.compbiolchem.2014.08.017 · Cited by 21 · see citing works

Symbiont Genomic Features and Localization in the Bean Beetle Callosobruchus maculatus

Berasategui, A., Moller, A. G., Weiß, B., Beck, C. W., Bauchiero, C., Read, T. D., Gerardo, N. M., & Salem, H. (2021) · Applied and Environmental Microbiology · doi:10.1128/aem.00212-21 · Cited by 18 · see citing works

Association of purine asymmetry, strand-biased gene distribution and PolC within Firmicutes and beyond: a new appraisal

Saha, S. K., Goswami, A., & Dutta, C. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-430 · Cited by 17 · see citing works

Archives or Palimpsests? Bacterial Genomes Unveil a Scenario for the Origin of Life

Danchin, A. (2007) · Biological Theory · doi:10.1162/biot.2007.2.1.52 · Cited by 16 · see citing works

Genomes and Genome-Level Engineering of Amino Acid-Producing Bacteria

Yukawa, H., Inui, M., & Vertès, A. A. (2006) · Springer eBooks · doi:10.1007/7171_2006_066 · Cited by 16 · see citing works

Does Gene Translocation Accelerate the Evolution of Laterally Transferred Genes?

Hao, W., & Golding, G. B. (2009) · Genetics · doi:10.1534/genetics.109.104216 · Cited by 15 · see citing works

Too Much of a Good Thing: How Ectopic DNA Replication Affects Bacterial Replication Dynamics

Syeda, A. H., Dimude, J. U., Skovgaard, O., & Rudolph, C. J. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00534 · Cited by 14 · see citing works

Genome Size and Structure, Bacterial

Ochman, H., & Caro‐Quintero, A. (2016) · Elsevier eBooks · doi:10.1016/b978-0-12-800049-6.00235-3 · Cited by 15 · see citing works

Strand-Biased Gene Distribution in Bacteria Is Related to both Horizontal Gene Transfer and Strand-Biased Nucleotide Composition

Wu, H., Qu, H., Wan, N., Zhang, Z., Hu, S., & Yu, J. M. (2012) · Genomics Proteomics & Bioinformatics · doi:10.1016/j.gpb.2012.08.001 · Cited by 14 · see citing works

Bacterial phylogenetic tree construction based on genomic translation stop signals

Xu, L., Kuo, J., Liu, J.-K., & Wong, T.-Y. (2012) · Microbial Informatics and Experimentation · doi:10.1186/2042-5783-2-6 · Cited by 13 · see citing works

Order from the Order: How a Spatiotemporal Genetic Program Is Encoded in a 2-D Genetic Map of the Bacterial Chromosome

Muskhelishvili, G., & TRAVERS, A. A. (2014) · Microbial Physiology · doi:10.1159/000368852 · Cited by 13 · see citing works

DNA Replication Induces Compositional Biases in Yeast

Marsolier‐Kergoat, M., & Goldar, A. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr240 · Cited by 13 · see citing works

Novel Drug Targets for Food-Borne Pathogen Campylobacter jejuni : An Integrated Subtractive Genomics and Comparative Metabolic Pathway Study

Mehla, K., & Ramana, J. (2015) · OMICS A Journal of Integrative Biology · doi:10.1089/omi.2015.0046 · Cited by 13 · see citing works

Composition of Transcription Machinery and Its Crosstalk with Nucleoid-Associated Proteins and Global Transcription Factors

Muskhelishvili, G., Sobetzko, P., Mehandziska, S., & Travers, A. (2021) · Biomolecules · doi:10.3390/biom11070924 · Cited by 11 · see citing works

Gene organization inside replication domains in mammalian genomes

Zaghloul, L., Baker, A., Audit, B., & Arnéodo, A. (2012) · Comptes Rendus Mécanique · doi:10.1016/j.crme.2012.10.023 · Cited by 12 · see citing works

Chromosomal Organization and Regulation of Genetic Function in Escherichia coli Integrates the DNA Analog and Digital Information

TRAVERS, A. A., & Muskhelishvili, G. (2020) · EcoSal Plus · doi:10.1128/ecosalplus.esp-0016-2019 · Cited by 12 · see citing works

Functionality of essential genes drives gene strand-bias in bacterial genomes

Lin, Y., Gao, F., & Zhang, C. (2010) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2010.04.119 · Cited by 41 · see citing works

Essentiality, not expressiveness, drives gene-strand bias in bacteria

Rocha, E. P. C., & Danchin, A. (2003) · Nature Genetics · doi:10.1038/ng1209 · Cited by 211 · see citing works

Corrigenda

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Essentiality drives the orientation bias of bacterial genes in a continuous manner

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Gene Distribution

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