GenePaint.org: an atlas of gene expression patterns in the mouse embryo
Open accessAbstract
High-throughput instruments were recently developed to determine gene expression patterns on tissue sections by RNA in situ hybridization. The resulting images of gene expression patterns, chiefly of E14.5 mouse embryos, are accessible to the public at http://www.genepaint.org. This relational database is searchable for gene identifiers and RNA probe sequences. Moreover, patterns and intensity of expression in approximately 100 different embryonic tissues are annotated and can be searched using a standardized catalog of anatomical structures. A virtual microscope tool, the Zoom Image Server, was implemented in GenePaint.org and permits interactive zooming and panning across approximately 15,000 high-resolution images.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The boundary between the 3V ChP and developing pineal gland was mapped using published ISH of marker genes from the data.
“We leveraged the inclusion of adjacent brain tissue in our atlas to map the boundary between the 3V ChP and developing pineal gland using published ISH (Lein et al., 2007; Visel et al., 2004) of marker genes from our data (Figure S2C).”
From A cellular and spatial map of the choroid plexus across brain ventricles and ages (2021) · cites this paper as Visel et al., 2004
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302 · see citing works
Initial sequencing and analysis of the human genome
International Human Genome Sequencing Consortium, Whitehead Institute for Biomedical Research, C. F. G. R., Lander, E. S., Linton, L. M., Birren, B., Nusbaum, C., Zody, M. C., Baldwin, J., Devon, K., Dewar, K., et al. (2001) · Nature · doi:10.1038/35057062 · Cited by 24,216 · see citing works
The sequence of the human genome
Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G., Smith, H. O., Yandell, M., Evans, C. A., Holt, R. A., et al. (2001) · Science · doi:10.1126/science.1058040 · Cited by 13,909 · see citing works
Initial sequencing and comparative analysis of the mouse genome
Mouse Genome Sequencing Consortium (2002) · Nature · doi:10.1038/nature01262 · Cited by 7,187 · see citing works
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs
Okazaki, Y., Furuno, M., Kasukawa, T., Adachi, J., Bono, H. U., Kondo, S., Nikaido, I., Osato, N., Saito, R., Suzuki, H., et al. (2002) · Nature · doi:10.1038/nature01266 · Cited by 1,636 · see citing works
RefSeq and LocusLink: NCBI gene-centered resources
Pruitt, K. D. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.1.137 · Cited by 884 · see citing works
Single-Cell Transcriptional Analysis of Neuronal Progenitors
Tietjen, I., Rihel, J. M., Cao, Y., Koentges, G., Zakhary, L., & Dulac, C. (2003) · Neuron · doi:10.1016/s0896-6273(03)00229-0 · Cited by 260 · see citing works
MGD: the Mouse Genome Database
Blake, J. A. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkg047 · Cited by 246 · see citing works
An internet-accessible database of mouse developmental anatomy based on a systematic nomenclature
Bard, J., Kaufman, M. H., Dubreuil, C., Brune, R., Burger, A., Baldock, R., & Davidson, D. R. (1998) · Mechanisms of Development · doi:10.1016/s0925-4773(98)00069-0 · Cited by 128 · see citing works
A transcriptome atlas of the mouse brain at cellular resolution
Carson, J. P., Thaller, C., & Eichele, G. (2002) · Current Opinion in Neurobiology · doi:10.1016/s0959-4388(02)00356-2 · Cited by 81 · see citing works
Speel, E. M. (1999) · Histochemistry and Cell Biology · doi:10.1007/s004180050396 · Cited by 64 · see citing works
DNA arrays and neurobiology — what's new and what's next?
Barlow, C., & Lockhart, D. J. (2002) · Current Opinion in Neurobiology · doi:10.1016/s0959-4388(02)00353-7 · Cited by 42 · see citing works
Rules and Guidelines for Mouse Gene, Allele, and Mutation Nomenclature: A Condensed Version
Maltais, L. J., Blake, J. A., Chu, T., Lutz, C. M., Eppig, J. T., & Jackson, I. J. (2002) · Genomics · doi:10.1006/geno.2002.6747 · Cited by 35 · see citing works
Herzig, U., Cadenas, C., Sieckmann, F., Sierralta, W. D., Christina Thaller, B., Visel, A., & Gregor Eichele, C. (2001) · Novartis Foundation symposium · doi:10.1002/0470846674.ch11 · Cited by 31 · see citing works
A Gene Expression Map of the Mouse Brain
Visel, A., Ahdidan, J., & Eichele, G. (2003) · Springer eBooks · doi:10.1007/978-1-4615-1079-6_2 · Cited by 7 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Genome-wide atlas of gene expression in the adult mouse brain
Lein, E. S., Hawrylycz, M. J., Ao, N., Ayres, M., Bensinger, A., Bernard, A., Boe, A. F., Boguski, M. S., Brockway, K. S., Byrnes, E. J., et al. (2007) · Nature · doi:10.1038/nature05453 · Cited by 5,572 · see citing works
Neuronal subtype specification in the cerebral cortex
Molyneaux, B. J., Arlotta, P., Menezes, J. R. L., & Macklis, J. D. (2007) · Nature reviews. Neuroscience · doi:10.1038/nrn2151 · Cited by 1,632 · see citing works
Common genetic variants on 5p14.1 associate with autism spectrum disorders
Wang, K., Zhang, H., Ma, D., Bucan, M., Glessner, J. T., Abrahams, B. S., Salyakina, D., Imielinski, M., Bradfield, J. P., Sleiman, P. M. A., et al. (2009) · Nature · doi:10.1038/nature07999 · Cited by 989 · see citing works
Molecular logic of neocortical projection neuron specification, development and diversity
Greig, L. C., Woodworth, M. B., Galazo, M. J., Padmanabhan, H., & Macklis, J. D. (2013) · Nature Reviews Neuroscience · doi:10.1038/nrn3586 · Cited by 863 · see citing works
Persson, M., Andrén, Y., Mark, J., Horlings, H. M., Persson, F., & Stenman, G. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0909114106 · Cited by 788 · see citing works
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Diez-Roux, G., Banfi, S., Sultan, M., Geffers, L., Anand, S., Rozado, D., Magen, A., Canidio, E., Pagani, M., Peluso, I., et al. (2011) · PLoS Biology · doi:10.1371/journal.pbio.1000582 · Cited by 638 · see citing works
A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain
Kleaveland, B., Shi, C. Y., Stefano, J., & Bartel, D. P. (2018) · Cell · doi:10.1016/j.cell.2018.05.022 · Cited by 594 · see citing works
ESRP1 and ESRP2 Are Epithelial Cell-Type-Specific Regulators of FGFR2 Splicing
Warzecha, C. C., Sato, T. K., Nabet, B., Hogenesch, J. B., & Carstens, R. P. (2009) · Molecular Cell · doi:10.1016/j.molcel.2009.01.025 · Cited by 570 · see citing works
Pereira, J. D., Sansom, S. N., Smith, J. C., Dobenecker, M., Tarakhovsky, A., & Livesey, F. J. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002530107 · Cited by 445 · see citing works
Sansom, S. N., Griffiths, D. S., Faedo, A., Kleinjan, D., Ruan, Y., Smith, J. C., van Heyningen, V., Rubenstein, J. L. R., & Livesey, F. J. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000511 · Cited by 401 · see citing works
A cellular and spatial map of the choroid plexus across brain ventricles and ages
Dani, N., Herbst, R. H., McCabe, C., Green, G. S., Kaiser, K., Head, J. P., Cui, J., Shipley, F. B., Jang, A., Dionne, D., et al. (2021) · Cell · doi:10.1016/j.cell.2021.04.003 · Cited by 388 · see citing works
Brill, L. B., Kanner, W. A., Fehr, A., Andrén, Y., Moskaluk, C. A., Löning, T., Stenman, G., & Frierson, H. F. (2011) · Modern Pathology · doi:10.1038/modpathol.2011.86 · Cited by 375 · see citing works
An anatomic gene expression atlas of the adult mouse brain
Ng, L., Bernard, A., Lau, C., Overly, C. C., Dong, H., Kuan, C. L., Pathak, D. S., Sunkin, S. M., Dang, C., Bohland, J. W., et al. (2009) · Nature Neuroscience · doi:10.1038/nn.2281 · Cited by 279 · see citing works
Foxp2 regulates gene networks implicated in neurite outgrowth in the developing brain
Vernes, S. C., Oliver, P. L., Spiteri, E., Lockstone, H. E., Puliyadi, R., Taylor, J. M., Ho, J., Mombereau, C., Brewer, A., Lowy, E., et al. (2011) · PLoS Genetics · doi:10.1371/journal.pgen.1002145 · Cited by 276 · see citing works
Visualization of image data from cells to organisms
Walter, T., Shattuck, D. W., Baldock, R., Bastin, M. E., Carpenter, A. E., Duce, S., Ellenberg, J., Fraser, A. N., Hamilton, N., Pieper, S., et al. (2010) · Nature Methods · doi:10.1038/nmeth.1431 · Cited by 261 · see citing works
DeSisto, J., O’Rourke, R., Jones, H. E., Pawlikowski, B., Malek, A. D., Bonney, S., Guimiot, F., Jones, K. L., & Siegenthaler, J. A. (2020) · Developmental Cell · doi:10.1016/j.devcel.2020.06.009 · Cited by 241 · see citing works
Bohland, J. W., Wu, C., Barbas, H., Bokil, H., Bota, M., Breiter, H. C., Cline, H. T., Doyle, J. C., Freed, P. J., Greenspan, R. J., et al. (2009) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000334 · Cited by 261 · see citing works
A High-Resolution Enhancer Atlas of the Developing Telencephalon
Visel, A., Taher, L., Girgis, H., May, D., Golonzhka, O., Hoch, R. V., McKinsey, G. L., Pattabiraman, K., Silberberg, S. N., Blow, M. J., et al. (2013) · Cell · doi:10.1016/j.cell.2012.12.041 · Cited by 257 · see citing works
Self-citationKinesin 3 and cytoplasmic dynein mediate interkinetic nuclear migration in neural stem cells
Tsai, J., Lian, W.-N., Kemal, S., Kriegstein, A. R., & Vallee, R. B. (2010) · Nature Neuroscience · doi:10.1038/nn.2665 · Cited by 257 · see citing works
A Quantitative Spatiotemporal Atlas of Gene Expression in the Drosophila Blastoderm
Fowlkes, C. C., Hendriks, C. L. L., Keränen, S. V. E., Weber, G. H., Rübel, O., Huang, M.-Y., Chatoor, S., DePace, A. H., Simirenko, L., Henriquez, C., et al. (2008) · Cell · doi:10.1016/j.cell.2008.01.053 · Cited by 257 · see citing works
Fyffe, S. L., Neul, J. L., Samaco, R. C., Chao, H.-T., Ben-Shachar, S., Moretti, P., McGill, B. E., Goulding, E. H., Sullivan, E., Tecott, L. H., et al. (2008) · Neuron · doi:10.1016/j.neuron.2008.07.030 · Cited by 254 · see citing works
von Gise, A., Zhou, B., Honor, L. B., Ma, Q., Petryk, A., & Pu, W. T. (2011) · Developmental Biology · doi:10.1016/j.ydbio.2011.05.668 · Cited by 252 · see citing works
Kobayashi, A., Mugford, J. W., Krautzberger, A. M., Naiman, N., Liao, J., & McMahon, A. P. (2014) · Stem Cell Reports · doi:10.1016/j.stemcr.2014.08.008 · Cited by 248 · see citing works
Members of the miRNA-200 Family Regulate Olfactory Neurogenesis
Choi, P. S., Zakhary, L., Choi, W.-Y., Caron, S. J. C., Alvarez-Saavedra, E., Miska, E. A., McManus, M. T., Harfe, B. D., Giráldez, A. J., Horvitz, H. R., et al. (2008) · Neuron · doi:10.1016/j.neuron.2007.11.018 · Cited by 245 · see citing works
Pöyhönen, S., Er, Ş., Domanskyi, A., & Airavaara, M. (2019) · Frontiers in Physiology · doi:10.3389/fphys.2019.00486 · Cited by 241 · see citing works
Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes
Engelen, E., Akinci, U., Bryne, J. C., Hou, J., Gontan, C., Moen, M., Szumska, D., Kockx, C., van IJcken, W., Dekkers, D. H. W., et al. (2011) · Nature Genetics · doi:10.1038/ng.825 · Cited by 255 · see citing works
Mouse models of MeCP2 disorders share gene expression changes in the cerebellum and hypothalamus
Ben-Shachar, S., Chahrour, M., Thaller, C., Shaw, C. A., & Zoghbi, H. Y. (2009) · Human Molecular Genetics · doi:10.1093/hmg/ddp181 · Cited by 253 · see citing works
Trimmer, J. S. (2015) · Neuron · doi:10.1016/j.neuron.2014.12.042 · Cited by 235 · see citing works
Mouse Genome Informatics: an integrated knowledgebase system for the laboratory mouse
Baldarelli, R. M., Smith, C. L., Ringwald, M., Richardson, J. E., Bult, C. J., Mouse Genome Informatics Group, Anagnostopoulos, A. V., Begley, D. A., Bello, S. M., Christie, K., et al. (2024) · Genetics · doi:10.1093/genetics/iyae031 · Cited by 240 · see citing works
Redell, J. B., Liu, Y., & Dash, P. K. (2008) · Journal of Neuroscience Research · doi:10.1002/jnr.21945 · Cited by 214 · see citing works
Pathogenic DDX3X Mutations Impair RNA Metabolism and Neurogenesis during Fetal Cortical Development
Lennox, A. L., Hoye, M. L., Jiang, R., Johnson-Kerner, B., Suit, L., Venkataramanan, S., Sheehan, C. J., Alsina, F. C., Fregeau, B., Aldinger, K. A., et al. (2020) · Neuron · doi:10.1016/j.neuron.2020.01.042 · Cited by 205 · see citing works
Hsu, Y., Zillikens, M. C., Wilson, S. G., Farber, C. R., Demissie, S., Soranzo, N., Bianchi, E. N., Grundberg, E., Liang, L., Richards, J. B., et al. (2010) · PLoS Genetics · doi:10.1371/journal.pgen.1000977 · Cited by 210 · see citing works
Mutations in DCHS1 cause mitral valve prolapse
Durst, R. Y., Sauls, K., Peal, D. S., deVlaming, A., Toomer, K. A., Leyne, M., Salani, M., Talkowski, M. E., Brand, H., Perrocheau, M., et al. (2015) · Nature · doi:10.1038/nature14670 · Cited by 208 · see citing works
A single-cell time-lapse of mouse prenatal development from gastrula to birth
Qiu, C., Martin, B., Welsh, I. C., Daza, R. M., Le, T.-M., Huang, X., Nichols, E. K., Taylor, M. L., Fulton, O., O’Day, D. R., et al. (2024) · Nature · doi:10.1038/s41586-024-07069-w · Cited by 199 · see citing works
Gouw, A. M., Margulis, K., Liu, N. S., Raman, S. J., Mancuso, A., Toal, G. G., Tong, L., Mosley, A. R., Hsieh, A. L., Sullivan, D. K., et al. (2019) · Cell Metabolism · doi:10.1016/j.cmet.2019.07.012 · Cited by 195 · see citing works
An instructive role for patterned spontaneous retinal activity in mouse visual map development
Xu, H.-P., Furman, M., Mineur, Y. S., Chen, H., King, S. L., Zenisek, D., Zhou, Z. J., Butts, D. A., Tian, N., Picciotto, M. R., et al. (2011) · Neuron · doi:10.1016/j.neuron.2011.04.028 · Cited by 170 · see citing works
Non-cell-autonomous retinoid signaling is crucial for renal development
Rosselot, C., Spraggon, L., Chia, I. V., Batourina, E., Riccio, P., Lu, B., Niederreither, K., Dollé, P., Duester, G., Chambon, P., et al. (2010) · Development · doi:10.1242/dev.040287 · Cited by 181 · see citing works
Cis-regulatory control of corticospinal system development and evolution
Shim, S., Kwan, K. Y., Li, M., Lefebvre, V., & Šestan, N. (2012) · Nature · doi:10.1038/nature11094 · Cited by 183 · see citing works
Silver, D. L., Watkins‐Chow, D. E., Schreck, K. C., Pierfelice, T. J., Larson, D. M., Burnetti, A., Liaw, H., Myung, K., Walsh, C. A., Gaiano, N., et al. (2010) · Nature Neuroscience · doi:10.1038/nn.2527 · Cited by 177 · see citing works
Kim, D. W., Washington, P. W., Wang, Z. Q., Lin, S. H., Sun, C., Ismail, B. T., Wang, H., Jiang, L., & Blackshaw, S. (2020) · Nature Communications · doi:10.1038/s41467-020-18231-z · Cited by 174 · see citing works
Sex-specific roles of -catenin in mouse gonadal development
Liu, C.-F., Bingham, N., Parker, K. L., & Yao, H. H. (2008) · Human Molecular Genetics · doi:10.1093/hmg/ddn362 · Cited by 175 · see citing works
Accurate measurements of dynamics and reproducibility in small genetic networks
Dubuis, J., Samanta, R., & Gregor, T. (2013) · Molecular Systems Biology · doi:10.1038/msb.2012.72 · Cited by 173 · see citing works
Yaylaoglu, M., Titmus, A., Visel, A., Álvarez-Bolado, G., Christina Thaller, B., & Gregor Eichele, C. (2005) · Developmental Dynamics · doi:10.1002/dvdy.20441 · Cited by 163 · see citing works
Function and Regulation of AUTS2, a Gene Implicated in Autism and Human Evolution
Oksenberg, N., Stevison, L., Wall, J. D., & Ahituv, N. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003221 · Cited by 167 · see citing works
Abnormal development of the cerebral cortex and cerebellum in the setting of lamin B2 deficiency
Coffinier, C., Chang, S. Y., Nobumori, C., Tu, Y., Farber, E., Toth, J. I., Fong, L. G., & Young, S. G. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0908790107 · Cited by 167 · see citing works
Mu, X., Fu, X., Beremand, P. D., Thomas, T. L., & Klein, W. H. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0802627105 · Cited by 167 · see citing works
Reelin and Stk25 Have Opposing Roles in Neuronal Polarization and Dendritic Golgi Deployment
Matsuki, T., Matthews, R. T., Cooper, J. A., van der Brug, M. P., Cookson, M., Hardy, J., Olson, E. C., & Howell, B. W. (2010) · Cell · doi:10.1016/j.cell.2010.10.029 · Cited by 166 · see citing works
Ruzzo, E. K., Capo‐Chichi, J., Ben‐Zeev, B., Chitayat, D. A., Mao, H., Pappas, A. L., Hitomi, Y., Lu, Y., Yao, X., Hamdan, F. F., et al. (2013) · Neuron · doi:10.1016/j.neuron.2013.08.013 · Cited by 167 · see citing works
Wagner, N., Wagner, K., Theres, H., Englert, C., Schedl, A., & Scholz, H. (2005) · Genes & Development · doi:10.1101/gad.346405 · Cited by 165 · see citing works
Gofflot, F., Chartoire, N., Vasseur, L., Heikkinen, S., Dembélé, D., Merrer, J. L., & Auwerx, J. H. (2007) · Cell · doi:10.1016/j.cell.2007.09.012 · Cited by 164 · see citing works
Molecular mechanisms of pituitary organogenesis: In search of novel regulatory genes
Davis, S. W., Castinetti, F., Carvalho, L. R. S., Ellsworth, B. S., Potok, M. A., Lyons, R. H., Brinkmeier, M. L., Raetzman, L. T., Carninci, P., Mortensen, A. H., et al. (2009) · Molecular and Cellular Endocrinology · doi:10.1016/j.mce.2009.12.012 · Cited by 163 · see citing works
Developmental Biology of the Meninges
Dasgupta, K., & Jeong, J. (2019) · Genesis · doi:10.1002/dvg.23288 · Cited by 141 · see citing works
Sharpe, J. A. (2004) · Annual Review of Biomedical Engineering · doi:10.1146/annurev.bioeng.6.040803.140210 · Cited by 160 · see citing works
Spatial expression of transcription factors in Drosophilaembryonic organ development
Hammonds, A. S., Bristow, C. A., Fisher, W. W., Weiszmann, R., Wu, S., Hartenstein, V., Kellis, M., Yu, B., Frise, E., & Celniker, S. (2013) · Genome biology · doi:10.1186/gb-2013-14-12-r140 · Cited by 160 · see citing works
Baldridge, M. T., Lee, S., Brown, J. J., McAllister, N., Urbanek, K., Dermody, T. S., Nice, T. J., & Virgin, H. W. (2017) · Journal of Virology · doi:10.1128/jvi.02079-16 · Cited by 159 · see citing works
Farkas, L. M., Haffner, C., Giger, T., Khaitovich, P., Nowick, K., Birchmeier, C., Pääbo, S., & Huttner, W. Β. (2008) · Neuron · doi:10.1016/j.neuron.2008.09.020 · Cited by 159 · see citing works
Hoffmann, K., Müller, J. S., Stricker, S., Mégarbané, A., Rajab, A., Lindner, T. H., Cohen, M. Y., Chouery, É., Adaimy, L., Ghanem, I. B., et al. (2006) · The American Journal of Human Genetics · doi:10.1086/506257 · Cited by 157 · see citing works
miRNeye: a microRNA expression atlas of the mouse eye
Karali, M., Peluso, I., Gennarino, V. A., Bilio, M., Verde, R., Lago, G., Dollé, P., & Banfi, S. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-715 · Cited by 158 · see citing works
A Stem Cell Niche for Intermediate Progenitor Cells of the Embryonic Cortex
Javaherian, A., & Kriegstein, A. (2009) · Cerebral Cortex · doi:10.1093/cercor/bhp029 · Cited by 155 · see citing works
Richard, D. J., Liu, Z., Cao, J., Kiapour, A. M., Willen, J., Yarlagadda, S., Jagoda, E., Kolachalama, V. B., Sieker, J. T., Chang, G. H., et al. (2020) · Cell · doi:10.1016/j.cell.2020.02.057 · Cited by 142 · see citing works
Dynamic mRNA Transport and Local Translation in Radial Glial Progenitors of the Developing Brain
Pilaz, L., Lennox, A. L., Rouanet, J. P., & Silver, D. L. (2016) · Current Biology · doi:10.1016/j.cub.2016.10.040 · Cited by 144 · see citing works
Light-Sheet Microscopy and Its Potential for Understanding Developmental Processes
Wan, Y., McDole, K., & Keller, P. (2019) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-100818-125311 · Cited by 146 · see citing works
Identification of Arx transcriptional targets in the developing basal forebrain
Fulp, C. T., Cho, G., Marsh, E. D., Nasrallah, I. M., Labosky, P. A., & Golden, J. A. (2008) · Human Molecular Genetics · doi:10.1093/hmg/ddn271 · Cited by 138 · see citing works
The Fowler Syndrome-Associated Protein FLVCR2 Is an Importer of Heme
Duffy, S. P., Shing, J. C., Saraon, P., Berger, L., Eiden, M. V., Wilde, A., & Tailor, C. S. (2010) · Molecular and Cellular Biology · doi:10.1128/mcb.00690-10 · Cited by 130 · see citing works
Pereanu, W., & Hartenstein, V. (2006) · Journal of Neuroscience · doi:10.1523/jneurosci.4708-05.2006 · Cited by 125 · see citing works
Fu, H. Q., Cai, J., Clevers, H. C., Fast, E. M., Gray, S., Greenberg, R. S., Jain, M. K., Ma, Q., Qiu, M. S., Rowitch, D. H., et al. (2009) · Journal of Neuroscience · doi:10.1523/jneurosci.0160-09.2009 · Cited by 126 · see citing works
Neuroinformatics for Genome-Wide 3-D Gene Expression Mapping in the Mouse Brain
Ng, L., Pathak, D. S., Kuan, C. L., Lau, C. C., Dong, H., Sodt, A., Dang, C., Avants, B., Yushkevich, P. A., Gee, J. C., et al. (2007) · IEEE Transactions on Computational Biology and Bioinformatics · doi:10.1109/tcbb.2007.1035 · Cited by 125 · see citing works
Rare Copy Number Variants Contribute to Congenital Left-Sided Heart Disease
Hitz, M., Perreault, L. L., Marshall, C. R., Zada, Y. F., Davies, R., Yang, S. W., Lionel, A. C., D’Amours, G., Lemyre, E., Cullum, R., et al. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002903 · Cited by 125 · see citing works
Schilling, K., Oberdick, J., Rossi, F., & Baader, S. L. (2008) · Histochemistry and Cell Biology · doi:10.1007/s00418-008-0483-y · Cited by 121 · see citing works
A Genome-Wide Association Study (GWAS) for Bronchopulmonary Dysplasia
Wang, H., Julien, K. R. S., Stevenson, D. K., Hoffmann, T. J., Witte, J. S., Lazzeroni, L. C., Krasnow, M. A., Quaintance, C. C., Oehlert, J. W., Jelliffe‐Pawlowski, L. L., et al. (2013) · PEDIATRICS · doi:10.1542/peds.2013-0533 · Cited by 121 · see citing works
Loss of Wnt5a Disrupts Primordial Germ Cell Migration and Male Sexual Development in Mice1
Chawengsaksophak, K., Svingen, T., Ng, E. T., Epp, T. A., Spiller, C. M., Clark, C., Cooper, H. M., & Koopman, P. A. (2011) · Biology of Reproduction · doi:10.1095/biolreprod.111.095232 · Cited by 120 · see citing works
Genetic and Mechanical Regulation of Intestinal Smooth Muscle Development
Huycke, T. R., Miller, B. M., Gill, H. K., Nerurkar, N. L., Sprinzak, D., Mahadevan, L., & Tabin, C. J. (2019) · Cell · doi:10.1016/j.cell.2019.08.041 · Cited by 120 · see citing works
Hoerder‐Suabedissen, A., Oeschger, F. M., Krishnan, M. L., Belgard, T. G., Wang, W. Z., Lee, S., Webber, C., Petretto, E. G., Edwards, A. D., & Molnár, Z. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1218510110 · Cited by 117 · see citing works
Primary cilia defects causing mitral valve prolapse
Toomer, K. A., Yu, M., Fulmer, D. B., Guo, L., Moore, K. S., Moore, R. A., Drayton, K. D., Glover, J. S., Peterson, N., Ramos‐Ortiz, S., et al. (2019) · Science Translational Medicine · doi:10.1126/scitranslmed.aax0290 · Cited by 116 · see citing works
Maricich, S. M., Xia, A., Mathes, E. L., Wang, V. Y., Oghalai, J. S., Fritzsch, B., & Zoghbi, H. Y. (2009) · Journal of Neuroscience · doi:10.1523/jneurosci.2232-09.2009 · Cited by 113 · see citing works
Vega, H., Trainer, A. H., Gordillo, M., Crosier, M., Kayserili, H., Skovby, F., Uzielli, M. L. G., Schnur, R. E., Manouvrier‐Hanu, S., Blair, E., et al. (2009) · Journal of Medical Genetics · doi:10.1136/jmg.2009.068395 · Cited by 112 · see citing works
Molecular Neuroanatomy's “Three Gs”: A Primer
Dymecki, S. M., & Kim, J. C. (2007) · Neuron · doi:10.1016/j.neuron.2007.03.009 · Cited by 110 · see citing works
Identification of long-range regulatory elements in the protocadherin-α gene cluster
Ribich, S. A., Tasic, B., & Maniatis, T. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0609445104 · Cited by 112 · see citing works
Characterization of the proneural gene regulatory network during mouse telencephalon development
Gohlke, J. M., Armant, O., Parham, F., Smith, M. V., Zimmer, C., Castro, D. S., Nguyen, L., Parker, J. S., Gradwohl, G., Portier, C. J., et al. (2008) · BMC Biology · doi:10.1186/1741-7007-6-15 · Cited by 107 · see citing works
Boyle, M. P., Bernard, A., Thompson, C. L., Ng, L., Boe, A. F., Mortrud, M. T., Hawrylycz, M., Jones, A. R., Hevner, R. F., & Lein, E. S. (2011) · The Journal of Comparative Neurology · doi:10.1002/cne.22655 · Cited by 107 · see citing works
Hanna, P. E., & Anders, M. W. (2019) · Critical Reviews in Toxicology · doi:10.1080/10408444.2019.1692191 · Cited by 105 · see citing works
Metalloprotease Meprin β Generates Nontoxic N-terminal Amyloid Precursor Protein Fragments in Vivo
Jefferson, T., Čaušević, M., Keller, U. A. D., Schilling, O., Isbert, S., Geyer, R., Maier, W., Tschickardt, S., Jumpertz, T., Weggen, S., et al. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.252718 · Cited by 105 · see citing works
Dixit, R., Ai, X., & Fine, A. (2013) · Development · doi:10.1242/dev.098079 · Cited by 103 · see citing works
EMAGE mouse embryo spatial gene expression database: 2010 update
Richardson, L., Venkataraman, S., Stevenson, P. L., Yang, Y., Burton, N., Rao, J., Fisher, M. E., Baldock, R., Davidson, D. R., & Christiansen, J. H. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp763 · Cited by 101 · see citing works
Mao, H., McMahon, J. J., Tsai, Y., Wang, Z., & Silver, D. L. (2016) · PLoS Genetics · doi:10.1371/journal.pgen.1006282 · Cited by 97 · see citing works
Jamb and Jamc Are Essential for Vertebrate Myocyte Fusion
Powell, G. T., & Wright, G. J. (2011) · PLoS Biology · doi:10.1371/journal.pbio.1001216 · Cited by 97 · see citing works
Genome-wide association study of facial morphology reveals novel associations with FREM1 and PARK2
Lee, M. K., Shaffer, J. R., Leslie, E. J., Orlova, E., Carlson, J. C., Feingold, E., Marazita, M. L., & Weinberg, S. M. (2017) · PLoS ONE · doi:10.1371/journal.pone.0176566 · Cited by 92 · see citing works
Warnecke, M., Oster, H., Revelli, J.-P., Álvarez-Bolado, G., & Gregor Eichele, C. (2005) · Genes & Development · doi:10.1101/gad.317905 · Cited by 95 · see citing works
Basel‐Vanagaite, L., Dallapiccola, B., Ramírez‐Solis, R., Segref, A., Thiele, H., Edwards, A., Arends, M. J., Miró, X., White, J. K., Désir, J., et al. (2012) · The American Journal of Human Genetics · doi:10.1016/j.ajhg.2012.10.011 · Cited by 93 · see citing works
Redundancy and divergence in the amyloid precursor protein family
Shariati, S. A., & Strooper, B. D. (2013) · FEBS Letters · doi:10.1016/j.febslet.2013.05.026 · Cited by 92 · see citing works
Koirala, S., & Corfas, G. (2010) · PLoS ONE · doi:10.1371/journal.pone.0009198 · Cited by 91 · see citing works
Summerhurst, K., Stark, M. H., Sharpe, J. A., Davidson, D. R., & Murphy, P. (2008) · Gene Expression Patterns · doi:10.1016/j.gep.2008.01.007 · Cited by 92 · see citing works
Systematic approaches to central nervous system myelin
de Monasterio‐Schrader, P., Jahn, O., Tenzer, S., Wichert, S. P., Patzig, J., & Werner, H. B. (2012) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-012-0958-9 · Cited by 92 · see citing works
Development, Maturation, and Necessity of Transcription Factors in the Mouse Suprachiasmatic Nucleus
VanDunk, C., Hunter, L. A., & Gray, P. A. (2011) · The Journal of Neuroscience · doi:10.1523/jneurosci.5385-10.2011 · Cited by 89 · see citing works
England, A. R., Chaney, C. P., Das, A., Patel, M., Malewska, A., Armendariz, D. A., Hon, G. C., Strand, D. W., Drake, K. A., & Carroll, T. J. (2020) · Development · doi:10.1242/dev.190108 · Cited by 89 · see citing works
The mouse Gene Expression Database (GXD): 2014 update
Smith, C. M., Finger, J. H., Hayamizu, T. F., McCright, I. J., Xu, J., Berghout, J., Campbell, J., Corbani, L. E., Forthofer, K. L., Frost, P. J., et al. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt954 · Cited by 88 · see citing works
Gene Expression Analysis of the Embryonic Subplate
Oeschger, F. M., Wang, W.-Z., Lee, S., García‐Moreno, F., Goffinet, A. M., Arbonés, M. L., Rakić, S., & Molnár, Z. (2011) · Cerebral Cortex · doi:10.1093/cercor/bhr197 · Cited by 87 · see citing works
Ko, Y., Ament, S. A., Eddy, J. A., Caballero-Pérez, J., Earls, J. C., Hood, L., & Price, N. D. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1222897110 · Cited by 83 · see citing works
The mouse Gene Expression Database (GXD): 2007 update
Smith, C. M., Finger, J. H., Hayamizu, T. F., McCright, I. J., Eppig, J. T., Kadin, J. A., Richardson, J. E., & Ringwald, M. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl1003 · Cited by 85 · see citing works
Rbm8a Haploinsufficiency Disrupts Embryonic Cortical Development Resulting in Microcephaly
Mao, H., Pilaz, L., McMahon, J. J., Golzio, C., Wu, D., Shi, L., Katsanis, N., & Silver, D. L. (2015) · Journal of Neuroscience · doi:10.1523/jneurosci.0018-15.2015 · Cited by 82 · see citing works
- Authors
- Visel, A.
- Affiliations
- Max Planck Society (DE)
- Corresponding author
- Visel, A.
- ORCID
- Visel, A.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-01-01
- Volume
- 32
- Issue
- 90001
- Pages
- 552D-556
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- PMC
- PMC308763
- OpenAlex
- W1985901090
- Cited by
- 528
- References
- 15
- Citations by year
- 2026: 13 · 2025: 17 · 2024: 26 · 2023: 25 · 2022: 15 · 2021: 25 · 2020: 23 · 2019: 27 · 2018: 16 · 2017: 16 · 2016: 28 · 2015: 27 · 2014: 25 · 2013: 38 · 2012: 21
- FWCI
- 3.57
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Nucleic Acids Research (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Max Planck Institute for Plasma Physics (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- Funders
- European Commission
- Boehringer Ingelheim Fonds
- Max-Planck-Gesellschaft
- National Institute of Neurological Disorders and Stroke
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bioinformatics and Genomic Networks
- Keywords
- gene expression patterns, mouse embryo, E14.5, RNA in situ hybridization, relational databases, virtual microscope, gene expression atlas
- MeSH terms
- Animals, Brain, Embryo, Mammalian, RNA, Messenger, Software, RNA Probes, Information Storage and Retrieval, In Situ Hybridization, Gene Expression Regulation, Developmental, Computational Biology, Internet, Gene Expression Profiling, Databases, Genetic, Mice
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review