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The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice
Open accessAbstract
The nucleotide sequence was determined for the genome of Xanthomonas oryzae pathovar oryzae (Xoo) KACC10331, a bacterium that causes bacterial blight in rice (Oryza sativa L.). The genome is comprised of a single, 4 941 439 bp, circular chromosome that is G + C rich (63.7%). The genome includes 4637 open reading frames (ORFs) of which 3340 (72.0%) could be assigned putative function. Orthologs for 80% of the predicted Xoo genes were found in the previously reported X.axonopodis pv. citri (Xac) and X.campestris pv. campestris (Xcc) genomes, but 245 genes apparently specific to Xoo were identified. Xoo genes likely to be associated with pathogenesis include eight with similarity to Xanthomonas avirulence (avr) genes, a set of hypersensitive reaction and pathogenicity (hrp) genes, genes for exopolysaccharide production, and genes encoding extracellular plant cell wall-degrading enzymes. The presence of these genes provides insights into the interactions of this pathogen with its gramineous host.
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Cited by
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Ryan, R. P., Fouhy, Y., Lucey, J. F., Crossman, L. C., Spiro, S., He, Y.-W., Zhang, L.-H., Heeb, S., Cámara, M., Williams, P., et al. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0600345103 · Cited by 507
RetractedEDGAR: A software framework for the comparative analysis of prokaryotic genomes
Blom, J., Albaum, S. P., Doppmeier, D., Pühler, A., Vorhölter, F.-J., Zakrzewski, M., & Goesmann, A. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-154 · Cited by 411
Metadata
- Authors
- Lee, B.-M.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2005-01-19
- Volume
- 33
- Issue
- 2
- Pages
- 577-586
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2095619657
- Cited by
- 446
- References
- 0
- FWCI
- 43.98
- Type
- journal article
- Language
- en
- Open access
- gold
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- Lee, B.-M. (2005). The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice. Nucleic Acids Research. https://doi.org/10.1093/nar/gki206
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