The DOI matches its Crossref record; 11 of the 11 references it cites were found in a registry or an index.
VARNA: Interactive drawing and editing of the RNA secondary structure
Open accessAbstract
Description: VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases. Features: VARNA implements four drawing algorithms, supports input/output using the classic formats dbn, ct, bpseq and RNAML and exports the drawing as five picture formats, either pixel-based (JPEG, PNG) or vector-based (SVG, EPS and XFIG). It also allows manual modification and structural annotation of the resulting drawing using either an interactive point and click approach, within a web server or through command-line arguments. Availability: VARNA is a free software, released under the terms of the GPLv3.0 license and available at http://varna.lri.fr Contact: ponty@lri.fr Supplementary information: Supplementary data are available at Bioinformatics online.
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Cannone, J. J., Subramanian, S., Schnare, M. N., Collett, J. R., D'Souza, L. M., Du, Y., Feng, B., Lin, N., Madabusi, L. V., Müller, K. M., et al. (2002) · BMC Bioinformatics · doi:10.1186/1471-2105-3-2 · Cited by 1,612
Geometric nomenclature and classification of RNA base pairs
LEONTIS, N. B., & WESTHOF, E. (2001) · RNA · doi:10.1017/s1355838201002515 · Cited by 1,073
DINAMelt web server for nucleic acid melting prediction
Markham, N. R., & Zuker, M. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki591 · Cited by 944
Fast and reliable prediction of noncoding RNAs
Washietl, S., Hofacker, I. L., & Stadler, P. F. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0409169102 · Cited by 665
Sfold web server for statistical folding and rational design of nucleic acids
Ding, Y., Chan, C. Y., & Lawrence, C. E. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh449 · Cited by 518
Lee, B.-M. (2005) · Nucleic Acids Research · doi:10.1093/nar/gki206 · Cited by 446
IRESite: the database of experimentally verified IRES structures (www.iresite.org)
Mokrejš, M., Vopálenský, V., Kolenaty, O., Masek, T., Feketová, Z., Sekyrová, P., Skaloudová, B., Kríz, V., & Pospísek, M. (2005) · Nucleic Acids Research · doi:10.1093/nar/gkj081 · Cited by 111
Xayaphoummine, A., Bucher, T., Thalmann, F., & Isambert, H. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2536430100 · Cited by 106
RNAML: A standard syntax for exchanging RNA information
Waugh, A., Gendron, P., Altman, R. B., Brown, J. W., Case, D. A., Gautheret, D., Harvey, S. C., Leontis, N. B., Westbrook, J., Westhof, É., et al. (2002) · RNA · doi:10.1017/s1355838202028017 · Cited by 105
Automatic extraction of mutations from Medline and cross-validation with OMIM
Rebholz‐Schuhmann, D. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh162 · Cited by 87
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Metadata
- Authors
- Darty, K., Denise, A., & Ponty, Y.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2009-04-27
- Volume
- 25
- Issue
- 15
- Pages
- 1974-1975
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2143407915
- Cited by
- 1,356
- References
- 11
- FWCI
- 12.84
- Type
- journal article
- Language
- en
- Open access
- hybrid
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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