The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
The Genome Portal of the Department of Energy Joint Genome Institute
Open accessAbstract
The Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility with massive-scale DNA sequencing and analysis capabilities dedicated to advancing genomics for bioenergy and environmental applications. Beyond generating tens of trillions of DNA bases annually, the Institute develops and maintains data management systems and specialized analytical capabilities to manage and interpret complex genomic data sets, and to enable an expanding community of users around the world to analyze these data in different contexts over the web. The JGI Genome Portal (http://genome.jgi.doe.gov) provides a unified access point to all JGI genomic databases and analytical tools. A user can find all DOE JGI sequencing projects and their status, search for and download assemblies and annotations of sequenced genomes, and interactively explore those genomes and compare them with other sequenced microbes, fungi, plants or metagenomes using specialized systems tailored to each particular class of organisms. We describe here the general organization of the Genome Portal and the most recent addition, MycoCosm (http://jgi.doe.gov/fungi), a new integrated fungal genomics resource.
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Cites
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans
King, N., Westbrook, M. J., Young, S. L., Kuo, A., Abedin, M., Chapman, J., Fairclough, S., Hellsten, U., Isogai, Y., Letunic, I., et al. (2008) · Nature · doi:10.1038/nature06617 · Cited by 1,139
Self-citationNiche of harmful alga Aureococcus anophagefferens revealed through ecogenomics
Gobler, C. J., Berry, D. L., Dyhrman, S. T., Wilhelm, S. W., Salamov, A., Lobanov, A. V., Zhang, Y., Collier, J. L., Wurch, L. L., Kustka, A. B., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1016106108 · Cited by 285
Self-citationFueling the future with fungal genomics
Grigoriev, I. V., Cullen, D., Goodwin, S. B., Hibbett, D., Jeffries, T. W., Kubicek, C. P., Kuske, C., Magnuson, J. K., Martin, F., Spatafora, J. W., et al. (2011) · Mycology · doi:10.1080/21501203.2011.584577 · Cited by 250
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MycoCosm portal: gearing up for 1000 fungal genomes
Grigoriev, I. V., Nikitin, R., Haridas, S., Kuo, A., Ohm, R., Otillar, R., Riley, R., Salamov, A., Zhao, X., Korzeniewski, F., et al. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1183 · Cited by 1,498
Self-citationSimulating 500 million years of evolution with a language model
Hayes, T., Rao, R., Akin, H., Sofroniew, N. J., Oktay, D., Lin, Z., Verkuil, R., Tran, V. Q., Deaton, J., Wiggert, M., et al. (2025) · Science · doi:10.1126/science.ads0018 · Cited by 937
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates
Nordberg, H., Cantor, M., Dusheyko, S., Hua, S., Poliakov, A., Shabalov, I., Smirnova, T., Grigoriev, I. V., & Dubchak, I. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1069 · Cited by 773
Self-citationAntifungal drug resistance evoked via RNAi-dependent epimutations
Calo, S., Shertz-Wall, C., Lee, S. C., Bastidas, R. J., Nicolás, F. E., Granek, J. A., Mieczkowski, P., Torres-Martínez, S., Ruiz-Vázquez, R. M., Cardenas, M. E., et al. (2014) · Nature · doi:10.1038/nature13575 · Cited by 175
Conserved MIP receptor–ligand pair regulates Platynereis larval settlement
Conzelmann, M., Williams, E. A., Tunaru, S., Randel, N., Shahidi, R., Asadulina, A., Berger, J., Offermanns, S., & Jékely, G. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1220285110 · Cited by 155
Metadata
- Authors
- Grigoriev, I. V., Nordberg, H., Shabalov, I., Aerts, A., Cantor, M., Goodstein, D., Kuo, A., Minovitsky, S., Nikitin, R., Ohm, R. A., Otillar, R., Poliakov, A., Ratnere, I., Riley, R., Smirnova, T., Rokhsar, D., & Dubchak, I.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-11-22
- Volume
- 40
- Issue
- D1
- Pages
- D26-D32
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2147790590
- Cited by
- 543
- References
- 4
- FWCI
- 24.57
- Type
- journal article
- Language
- en
- Open access
- gold
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- CoChat. (2026). Citation check: The Genome Portal of the Department of Energy Joint Genome Institute. https://app.cochat.ai/papers/10.1093/nar/gkr947
- The paper
- Grigoriev, I. V., Nordberg, H., Shabalov, I., Aerts, A., Cantor, M., Goodstein, D., Kuo, A., Minovitsky, S., Nikitin, R., Ohm, R. A., Otillar, R., Poliakov, A., Ratnere, I., Riley, R., Smirnova, T., Rokhsar, D., & Dubchak, I. (2012). The Genome Portal of the Department of Energy Joint Genome Institute. Nucleic Acids Research. https://doi.org/10.1093/nar/gkr947
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
