The DOI matches its Crossref record; 15 of the 15 references it cites were found in a registry or an index.
CDD: conserved domains and protein three-dimensional structure
Open accessAbstract
CDD, the Conserved Domain Database, is part of NCBI's Entrez query and retrieval system and is also accessible via http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml. CDD provides annotation of protein sequences with the location of conserved domain footprints and functional sites inferred from these footprints. Pre-computed annotation is available via Entrez, and interactive search services accept single protein or nucleotide queries, as well as batch submissions of protein query sequences, utilizing RPS-BLAST to rapidly identify putative matches. CDD incorporates several protein domain and full-length protein model collections, and maintains an active curation effort that aims at providing fine grained classifications for major and well-characterized protein domain families, as supported by available protein three-dimensional (3D) structure and the published literature. To this date, the majority of protein 3D structures are represented by models tracked by CDD, and CDD curators are characterizing novel families that emerge from protein structure determination efforts.
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The Pfam Protein Families Database
Bateman, A. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.276 · Cited by 14,000
The Pfam protein families database
Punta, M., Coggill, P. C., Eberhardt, R. Y., Mistry, J., Tate, J., Boursnell, C., Pang, N., Forslund, K., Ceric, G., Clements, J., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1065 · Cited by 3,719
CDD: a Conserved Domain Database for the functional annotation of proteins
Marchler-Bauer, A., Lu, S., Anderson, J. B., Chitsaz, F., Derbyshire, M. K., DeWeese-Scott, C., Fong, J. H., Geer, L. Y., Geer, R. C., Gonzales, N. R., et al. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1189 · Cited by 3,159
Self-citationAnnouncing the worldwide Protein Data Bank
Berman, H., Henrick, K., & Nakamura, H. (2003) · Nature Structural & Molecular Biology · doi:10.1038/nsb1203-980 · Cited by 3,093
CD-Search: protein domain annotations on the fly
Marchler-Bauer, A., & Bryant, S. H. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh454 · Cited by 2,080
Self-citationThe COG database: new developments in phylogenetic classification of proteins from complete genomes
Tatusov, R. L. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.1.22 · Cited by 1,895
SMART 7: recent updates to the protein domain annotation resource
Letunic, I., Doerks, T., & Bork, P. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr931 · Cited by 1,721
CDART: Protein Homology by Domain Architecture
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Self-citationSelengut, J. D., Haft, D. H., Davidsen, T., Ganapathy, A., Gwinn-Giglio, M., Nelson, W. C., Richter, A. R., & White, O. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkl1043 · Cited by 293
The National Center for Biotechnology Information's Protein Clusters Database
Klimke, W., Agarwala, R., Badretdin, A., Chetvernin, S., Ciufo, S., Fedorov, B., Kiryutin, B., O’Neill, K., Resch, W., Resenchuk, S., et al. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn734 · Cited by 260
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A census of human RNA-binding proteins
Gerstberger, S., Hafner, M., & Tuschl, T. (2014) · Nature Reviews Genetics · doi:10.1038/nrg3813 · Cited by 2,032
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Shmakov, S., Abudayyeh, O. O., Makarova, K. S., Wolf, Y. I., Gootenberg, J. S., Semenova, E., Minakhin, L., Joung, J., Konermann, S., Severinov, K., et al. (2015) · Molecular Cell · doi:10.1016/j.molcel.2015.10.008 · Cited by 1,209
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides
Tsirigos, K. D., Peters, C., Shu, N., Käll, L., & Elofsson, A. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv485 · Cited by 936
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Metadata
- Authors
- Marchler-Bauer, A., Zheng, C., Chitsaz, F., Derbyshire, M. K., Geer, L. Y., Geer, R. C., Gonzales, N. R., Gwadz, M., Hurwitz, D. I., Lanczycki, C. J., Lu, F., Lu, S., Marchler, G. H., Song, J. S., Thanki, N., Yamashita, R. A., Zhang, D., & Bryant, S. H.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2012-11-28
- Volume
- 41
- Issue
- D1
- Pages
- D348-D352
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2108649941
- Cited by
- 870
- References
- 15
- FWCI
- 69.79
- Type
- journal article
- Language
- en
- Open access
- gold
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- Marchler-Bauer, A., Zheng, C., Chitsaz, F., Derbyshire, M. K., Geer, L. Y., Geer, R. C., Gonzales, N. R., Gwadz, M., Hurwitz, D. I., Lanczycki, C. J., Lu, F., Lu, S., Marchler, G. H., Song, J. S., Thanki, N., Yamashita, R. A., Zhang, D., & Bryant, S. H. (2012). CDD: conserved domains and protein three-dimensional structure. Nucleic Acids Research. https://doi.org/10.1093/nar/gks1243
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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
