The DOI matches its Crossref record; 18 of the 18 references it cites were found in a registry or an index.
The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud
Open accessAbstract
The Taverna workflow tool suite (http://www.taverna.org.uk) is designed to combine distributed Web Services and/or local tools into complex analysis pipelines. These pipelines can be executed on local desktop machines or through larger infrastructure (such as supercomputers, Grids or cloud environments), using the Taverna Server. In bioinformatics, Taverna workflows are typically used in the areas of high-throughput omics analyses (for example, proteomics or transcriptomics), or for evidence gathering methods involving text mining or data mining. Through Taverna, scientists have access to several thousand different tools and resources that are freely available from a large range of life science institutions. Once constructed, the workflows are reusable, executable bioinformatics protocols that can be shared, reused and repurposed. A repository of public workflows is available at http://www.myexperiment.org. This article provides an update to the Taverna tool suite, highlighting new features and developments in the workbench and the Taverna Server.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Goecks, J., Nekrutenko, A., Taylor, J., & The Galaxy Team (2010) · Genome Biology · doi:10.1186/gb-2010-11-8-r86 · Cited by 3,453
Multiple Sequence Alignment Using ClustalW and ClustalX
Thompson, J. D., Gibson, T. J., & Higgins, D. G. (2003) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi0203s00 · Cited by 2,971
A new bioinformatics analysis tools framework at EMBL-EBI
Goujon, M., McWilliam, H., Li, W., Valentin, F., Squizzato, S., Paern, J., & Lopez, R. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq313 · Cited by 1,846
Activities at the Universal Protein Resource (UniProt)
(2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1140 · Cited by 1,735
Taverna: a tool for building and running workflows of services
Hull, D., Wolstencroft, K., Stevens, R., Goble, C., Pocock, M. R., Li, P., & Oinn, T. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkl320 · Cited by 943
Self-citationUpdate on activities at the Universal Protein Resource (UniProt) in 2013
The UniProt Consortium (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1068 · Cited by 672
myExperiment: a repository and social network for the sharing of bioinformatics workflows
Goble, C. A., Bhagat, J., Aleksejevs, S., Cruickshank, D., Michaelides, D., Newman, D., Borkum, M., Bechhofer, S., Roos, M., Li, P., et al. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq429 · Cited by 299
Self-citationBioCatalogue: a universal catalogue of web services for the life sciences
Bhagat, J., Tanoh, F., Nzuobontane, E., Laurent, T., Orlowski, J., Roos, M., Wolstencroft, K., Aleksejevs, S., Stevens, R., Pettifer, S., et al. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq394 · Cited by 217
Self-citationCollaborative development of predictive toxicology applications
Hardy, B. J., Douglas, N., Helma, C., Rautenberg, M., Jeliazkova, N., Jeliazkov, V., Nikolova, I., Benigni, R., Tcheremenskaia, O., Krämer, S., et al. (2010) · Journal of Cheminformatics · doi:10.1186/1758-2946-2-7 · Cited by 114
Cited by
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
Afgan, E., Baker, D., Batut, B., van den Beek, M., Bouvier, D., Čech, M., Chilton, J., Clements, D., Coraor, N., Grüning, B. A., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky379 · Cited by 3,662
Pegasus, a workflow management system for science automation
Deelman, E., Vahi, K., Juve, G., Rynge, M., Callaghan, S., Maechling, P. J., Mayani, R., Chen, W., Ferreira da Silva, R., Livny, M., et al. (2015) · Future Generation Computer Systems · doi:10.1016/j.future.2014.10.008 · Cited by 861
Challenges and opportunities in edge computing
Varghese, B., Wang, N., Barbhuiya, S., Kilpatrick, P., & Nikolopoulos, D. S. (2016) · 2016 IEEE International Conference on Smart Cloud (SmartCloud) · doi:10.1109/smartcloud.2016.18 · Cited by 565
Canadian Association of Radiologists White Paper on Artificial Intelligence in Radiology
Tang, A., Tam, R., Cadrin-Chênevert, A., Guest, W., Chong, J., Barfett, J., Chepelev, L., Cairns, R., Mitchell, J. R., Cicero, M. D., et al. (2018) · Canadian Association of Radiologists Journal · doi:10.1016/j.carj.2018.02.002 · Cited by 522
Deutsch, E. W., Mendoza, L., Shteynberg, D., Slagel, J., Sun, Z., & Moritz, R. L. (2015) · PROTEOMICS – Clinical Applications · doi:10.1002/prca.201400164 · Cited by 342
Metadata
- Authors
- Wolstencroft, K., Haines, R., Fellows, D., Williams, A., Withers, D., Owen, S., Soiland-Reyes, S., Dunlop, I., Nenadic, A., Fisher, P., Bhagat, J., Belhajjame, K., Bacall, F., Hardisty, A., Nieva de la Hidalga, A., Balcazar Vargas, M. P., Sufi, S., & Goble, C.
- Venue
- Nucleic Acids Research
- Publisher
- Oxford University Press (OUP)
- Published
- 2013-05-02
- Volume
- 41
- Issue
- W1
- Pages
- W557-W561
- ISSN
- 0305-1048 (ISSN-L)
- 1362-4962
- OpenAlex
- W2013434113
- Cited by
- 677
- References
- 18
- FWCI
- 208.48
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. https://app.cochat.ai/papers/10.1093/nar/gkt328
- The paper
- Wolstencroft, K., Haines, R., Fellows, D., Williams, A., Withers, D., Owen, S., Soiland-Reyes, S., Dunlop, I., Nenadic, A., Fisher, P., Bhagat, J., Belhajjame, K., Bacall, F., Hardisty, A., Nieva de la Hidalga, A., Balcazar Vargas, M. P., Sufi, S., & Goble, C. (2013). The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. Nucleic Acids Research. https://doi.org/10.1093/nar/gkt328
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
