New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

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14. A new taxonomy of the family Teloschistaceae
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15. Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
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17. Escherichia coli ST131- H 22 as a Foodborne Uropathogen
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24. Large-Scale Phylogenomic Analysis Reveals the Complex Evolutionary History of Rabies Virus in Multiple Carnivore Hosts
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25. Escherichia coli Sequence Type 410 Is Causing New International High-Risk Clones
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26. A Genomic View of Lactobacilli and Pediococci Demonstrates that Phylogeny Matches Ecology and Physiology
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27. A distinct abundant group of microbial rhodopsins discovered using functional metagenomics
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28. Deciphering a global network of functionally associated post‐translational modifications
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30. A Phylogenomic Solution to the Origin of Insects by Resolving Crustacean-Hexapod Relationships
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31. Phylo.io: Interactive Viewing and Comparison of Large Phylogenetic Trees on the Web
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32. Genomic diversity, lifestyles and evolutionary origins of DPANN archaea
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33. Effects of phylogenetic reconstruction method on the robustness of species delimitation using single‐locus data
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36. A Taxonomy of Bacterial Microcompartment Loci Constructed by a Novel Scoring Method
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37. Highly conserved low‐copy nuclear genes as effective markers for phylogenetic analyses in angiosperms
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38. African origin of the malaria parasite Plasmodium vivax
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39. Strong Purifying Selection at Synonymous Sites in D. melanogaster
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40. Siderophore-based microbial adaptations to iron scarcity across the eastern Pacific Ocean
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41. Ancient Cattle Genomics, Origins, and Rapid Turnover in the Fertile Crescent
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44. Evolution of sweet taste perception in hummingbirds by transformation of the ancestral umami receptor
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45. Modeling Protein Evolution with Several Amino Acid Replacement Matrices Depending on Site Rates
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46. The chromosomal organization of horizontal gene transfer in bacteria
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47. Widespread impact of horizontal gene transfer on plant colonization of land
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48. Widespread transmission of independent cancer lineages within multiple bivalve species
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49. Asgard archaea capable of anaerobic hydrocarbon cycling
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51. Assessment of Mycobacterium tuberculosis transmission in Oxfordshire, UK, 2007–12, with whole pathogen genome sequences: an observational study
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57. Lipid exchanges drove the evolution of mutualism during plant terrestrialization
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74. Evidence for Novel Hepaciviruses in Rodents
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77. Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution
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84. A major lineage of non-tailed dsDNA viruses as unrecognized killers of marine bacteria
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85. Multiple origins of prokaryotic and eukaryotic single-stranded DNA viruses from bacterial and archaeal plasmids
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86. Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell
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87. Population genomics shows no distinction between pathogenic Candida krusei and environmental Pichia kudriavzevii: One species, four names
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88. CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community
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90. Mitochondrial genomes reveal the global phylogeography and dispersal routes of the migratory locust
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91. Fungal negative-stranded RNA virus that is related to bornaviruses and nyaviruses
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93. Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny
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94. Insights into the Diversification and Evolution of R2R3-MYB Transcription Factors in Plants
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95. Coalescent versus Concatenation Methods and the Placement of Amborella as Sister to Water Lilies
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96. The Origin of GPCRs: Identification of Mammalian like Rhodopsin, Adhesion, Glutamate and Frizzled GPCRs in Fungi
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97. Avian Coronavirus in Wild Aquatic Birds
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99. Molecular evolutionary and structural analysis of the cytosolic DNA sensor cGAS and STING
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100. Evolutionary drivers of thermoadaptation in enzyme catalysis
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