The DOI matches its Crossref record; 65 of the 65 references it cites were found in a registry or an index.
SARS-CoV-2 escape in vitro from a highly neutralizing COVID-19 convalescent plasma
Preprint — published as 10.1073/pnas.2103154118
Abstract
To investigate the evolution of SARS-CoV-2 in the immune population, we co-incubated authentic virus with a highly neutralizing plasma from a COVID-19 convalescent patient. The plasma fully neutralized the virus for 7 passages, but after 45 days, the deletion of F140 in the spike N-terminal domain (NTD) N3 loop led to partial breakthrough. At day 73, an E484K substitution in the receptor-binding domain (RBD) occurred, followed at day 80 by an insertion in the NTD N5 loop containing a new glycan sequon, which generated a variant completely resistant to plasma neutralization. Computational modeling predicts that the deletion and insertion in loops N3 and N5 prevent binding of neutralizing antibodies. The recent emergence in the United Kingdom and South Africa of natural variants with similar changes suggests that SARS-CoV-2 has the potential to escape an effective immune response and that vaccines and antibodies able to control emerging variants should be developed. One Sentence Summary: Three mutations allowed SARS-CoV-2 to evade the polyclonal antibody response of a highly neutralizing COVID-19 convalescent plasma.
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“As seen in natural infection, a majority of the antibodies tested (9/17) were at least ten-fold less effective against pseudotyped viruses carrying the E484K mutation7,12,29.”
From mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants (2021) · cites this paper as [29]
In the citing paper
“Human neutralizing monoclonal antibodies to the SARS-CoV-2 RBD can be categorized as belonging to 4 different classes based on their target regions on the RBD29.”
From mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants (2021) · cites this paper as [29]
In the citing paper
“Fab-S complexes exhibited multiple RBD-binding orientations recognizing either ‘up’/‘down’ (Fig 4a–j) or solely ‘up’ (Fig 4k–n) RBD conformations, consistent with structurally defined antibody classes from natural infection (Fig 4o)29.”
From mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants (2021) · cites this paper as [29]
In the citing paper
“A475V is resistant to class 1 antibodies (structurally defined as described29); E484K and Q493R are resistant to class 2 antibodies7,8,12,13,29,30,32,33; while R346S, N439K, and N440K are resistant to class 3 antibodies7,8,12,13,29,33.”
From mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants (2021) · cites this paper as [29]
In the citing paper
“These antibodies target epitopes that overlap or are closely associated with RBD residues K417, E484 and N501.”
From mRNA vaccine-elicited antibodies to SARS-CoV-2 and circulating variants (2021) · cites this paper as [29]
In the citing paper
“SARS-CoV-2 vaccines have recently been licensed that target the spike (S) protein, either using mRNA or adenovirus vector technology with protection rates ranging from 62 to 95%9–11.”
From Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies (2021) · cites this paper as [9]
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“Although more than 7 billion people worldwide have been vaccinated,((1)) the protective effect of the vaccine has declined because of the novel coronavirus variant and immune escape.((19)) Due to the lack of effective measures, the treatment of COVID-19 is mainly focused on symptomatic treatment and supportive treatme…”
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“Одной из му таций была вставка между Y248 и L249 ундеца пептида KTRNKSTSRRE с преобладанием в нем положительно заряженных аминокислот и со держанием сайта (NKS) гликозилирования [7].”
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SARS-CoV-19 Mutations: is a Blessing or a Curse for Human Being?
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SARS-CoV-2 Vs Vaccines- the tug of war
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An open debate on SARS-CoV-2's proximal origin is long overduePreprint
Segreto, R., Deigin, Y., McCairn, K., Sousa, A., Sirotkin, D., Sirotkin, K. M., Couey, J. J., Jones, A., & Zhang, D. (2021) · arXiv (Cornell University) · doi:10.48550/arxiv.2102.03910 · Cited by 1
“Furthermore glycan sequons can actually arise in vitro in the presence of antibodies, as was recently observed during serial passaging of SARS-CoV-2 (Andreano et al. 2020) and may also arise in the lab during in vivo passaging of viruses in, for example, humanized mice.”
Background
Metadata
- Authors
- Andreano, E., Piccini, G., Licastro, D., Casalino, L., Johnson, N. V., Paciello, I., Monego, S. D., Pantano, E., Manganaro, N., Manenti, A., Manna, R., Casa, E., Hyseni, I., Benincasa, L., Montomoli, E., Amaro, R. E., McLellan, J. S., & Rappuoli, R.
- Publisher
- openRxiv
- Published
- 2020-12-28
- PMC
- PMC7781313
- References
- 56
- Type
- Preprint
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