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UK Biobank release and systematic evaluation of optimised polygenic risk scores for 53 diseases and quantitative traits
Open accessAbstract
We present and assess the UK Biobank (UKB) Polygenic Risk Score (PRS) Release, a set of PRSs for 28 diseases and 25 quantitative traits being made available on the individuals in UKB. We also release a benchmarking software tool to enable like-for-like performance evaluation for different PRSs for the same disease or trait. Extensive benchmarking shows the PRSs in the UKB Release to outperform a broad set of 81 published PRSs. For many of the diseases and traits we also validate the PRS algorithms in other cohorts. The availability of PRSs for 53 traits on the same set of individuals also allows a systematic assessment of their properties, and the increased power of these PRSs increases the evidence for their potential clinical benefit.
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“The PRS was derived using external Genome-wide association study (GWAS) training data and has been validated for its association with Late-Onset Alzheimer’s Disease (LOAD) within the UKB.80”
From TET2-mutant myeloid cells mitigate Alzheimer’s disease progression via CNS infiltration and enhanced phagocytosis in mice (2025) · cites this paper as [80]
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The UK Biobank resource with deep phenotyping and genomic data
Bycroft, C., Freeman, C., Petkova, D., Band, G., Elliott, L. T., Sharp, K., Motyer, A., Vukcevic, D., Delaneau, O., O’Connell, J., et al. (2018) · Nature · doi:10.1038/s41586-018-0579-z · Cited by 8,876
Self-citationFry, A., Littlejohns, T. J., Sudlow, C., Doherty, N., Adamska, L., Sprosen, T., Collins, R., & Allen, N. E. (2017) · American Journal of Epidemiology · doi:10.1093/aje/kwx246 · Cited by 3,979
Khera, A. V., Chaffin, M., Aragam, K. G., Haas, M. E., Roselli, C., Choi, S. H., Natarajan, P., Lander, E. S., Lubitz, S. A., Ellinor, P. T., et al. (2018) · Nature Genetics · doi:10.1038/s41588-018-0183-z · Cited by 2,953
Clinical use of current polygenic risk scores may exacerbate health disparities
Martin, A. R., Kanai, M., Kamatani, Y., Okada, Y., Neale, B. M., & Daly, M. J. (2019) · Nature Genetics · doi:10.1038/s41588-019-0379-x · Cited by 2,821
The personal and clinical utility of polygenic risk scores
Torkamani, A., Wineinger, N. E., & Topol, E. J. (2018) · Nature Reviews Genetics · doi:10.1038/s41576-018-0018-x · Cited by 1,655 · cited 1×
“Throughout, we use: (1) PRS score, or just PRS, for the score assigned to a particular individual; (2) PRS algorithm for the function which calculates the PRS score from genetic data on an individual; and (3) PRS methodology for the approach used to determine a particular PRS algorithm.”
MethodPolygenic risk scores: from research tools to clinical instruments
Lewis, C. M., & Vassos, E. (2020) · Genome Medicine · doi:10.1186/s13073-020-00742-5 · Cited by 1,360 · cited 1×
“Throughout, we use: (1) PRS score, or just PRS, for the score assigned to a particular individual; (2) PRS algorithm for the function which calculates the PRS score from genetic data on an individual; and (3) PRS methodology for the approach used to determine a particular PRS algorithm.”
MethodAnalysis of polygenic risk score usage and performance in diverse human populations
Duncan, L., Shen, H., Gelaye, B., Meijsen, J., Ressler, K., Feldman, M., Peterson, R., & Domingue, B. (2019) · Nature Communications · doi:10.1038/s41467-019-11112-0 · Cited by 1,038
Improving reporting standards for polygenic scores in risk prediction studies
Wand, H., Lambert, S. A., Tamburro, C. P., Iacocca, M. A., O’Sullivan, J. W., Sillari, C. H., Kullo, I. J., Rowley, R. K., Dron, J. S., Brockman, D., et al. (2021) · Nature · doi:10.1038/s41586-021-03243-6 · Cited by 484
Polygenic background modifies penetrance of monogenic variants for tier 1 genomic conditions
Fahed, A. C., Wang, M., Homburger, J. R., Patel, A. P., Bick, A. G., Neben, C. L., Lai, C., Brockman, D., Philippakis, A., Ellinor, P. T., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-17374-3 · Cited by 459
Genetic identification of familial hypercholesterolemia within a single U.S. health care system
Abul-Husn, N. S., Manickam, K., Jones, L. K., Wright, E. A., Hartzel, D. N., Gonzaga-Jauregui, C., O’Dushlaine, C., Leader, J. B., Lester Kirchner, H., Lindbuchler, D. M., et al. (2016) · Science · doi:10.1126/science.aaf7000 · Cited by 425
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Proteomic signatures improve risk prediction for common and rare diseases
Carrasco-Zanini, J., Pietzner, M., Davitte, J., Surendran, P., Croteau‐Chonka, D. C., Robins, C., Torralbo, A., Tomlinson, C., Grünschläger, F., Fitzpatrick, N. K., et al. (2024) · Nature Medicine · doi:10.1038/s41591-024-03142-z · Cited by 254
“Participants provided written informed consent.”
Thompson, D. J., Wells, D., Selzam, S., Peneva, I., Moore, R., Sharp, K., Tarran, W. A., Beard, E. J., Riveros-Mckay, F., Giner-Delgado, C., et al. (2024) · PLoS ONE · doi:10.1371/journal.pone.0307270 · Cited by 437
Self-citationSong, Y., Zhu, C., Shi, B., Song, C., Cui, K., Chang, Z., Gao, G., Jia, L., Fu, R., Dong, Q., et al. (2023) · EClinicalMedicine · doi:10.1016/j.eclinm.2023.102236 · Cited by 167
Chen, L., Wu, B., Mo, L., Chen, H., Zhao, Y., Tan, T., Chen, L., Li, Y., Yao, P., & Tang, Y. (2023) · The Lancet Healthy Longevity · doi:10.1016/s2666-7568(23)00220-9 · Cited by 175
Garg, M., Karpiński, M., Matelska, D., Middleton, L., Burren, O. S., Hu, F., Wheeler, E., Smith, K. R., Fabre, M. A., Mitchell, J., et al. (2024) · Nature Genetics · doi:10.1038/s41588-024-01898-1 · Cited by 134
“We compared the performance of MILTON models trained on 67 quantitative traits (Methods) with those trained on the respective disease-specific PRS 13 of a given phenotype, or all 36 standard PRSs available in the UKB.”
InfluentialCapalbo, A., de Wert, G. M. W. R., Mertes, H., Klausner, L., Coonen, E., Spinella, F., de Velde, H. V., Viville, S., Sermon, K., Vermeulen, N., et al. (2024) · Human Reproduction Update · doi:10.1093/humupd/dmae012 · Cited by 66
“While PRSs can theoretically be adjusted for ancestry (Khera et al. , 2019; Thompson et al. , 2022), it is yet unclear whether all dependence can be removed (Zaidi and Mathieson, 2020).”
BackgroundGenetic analysis and natural history of Parkinson’s disease due to the LRRK2 G2019S variant
Kmiecik, M. J., Micheletti, S. J., Coker, D., Heilbron, K., Shi, J., Stagaman, K., Sönmez, T. F., Fontanillas, P., Shringarpure, S., Wetzel, M., et al. (2024) · Brain · doi:10.1093/brain/awae073 · Cited by 68
“34,35 Participants without a PD diagnosis after 42 months or those lost to follow-up, were right censored and age at their last completed survey was used as the time of censoring.”
MethodEarly detection of dementia with default-mode network effective connectivity
Ereira, S., Waters, S., Razi, A., & Marshall, C. R. (2024) · Nature Mental Health · doi:10.1038/s44220-024-00259-5 · Cited by 82
“Detailed methods for how PRSs were generated have already been extensively documented 81 and will not be reproduced here.”
Diabetes, Prediabetes, and Brain Aging: The Role of Healthy Lifestyle
Dove, A. E., Wang, J., Huang, H., Dunk, M. M., Sakakibara, S., Guitart‐Masip, M., Papenberg, G., & Xu, W. (2024) · Diabetes Care · doi:10.2337/dc24-0860 · Cited by 62
“Brie fl y, PRS AD represents the Z-standardized sum of each participant ’ s number of AD-related alleles (including the well-known APOE e 4 polymorphism) weighted by the strength of each allele ’ s association with AD (34).”
MethodGenetic modifiers of rare variants in monogenic developmental disorder loci
Kingdom, R., Beaumont, R. N., Wood, A. R., Weedon, M. N., & Wright, C. F. (2024) · Nature Genetics · doi:10.1038/s41588-024-01710-0 · Cited by 59
“Other PGSs were similarly calculated from GWAS of intelligence 40 and cognitive ability 17 , and we used PGSs released by UKB for schizophrenia and bipolar disorder 18 .”
Zhang, R., Zhang, B., Shen, C., Sahakian, B. J., Li, Z., Zhang, W., Zhao, Y., Li, Y., Feng, J., & Cheng, W. (2024) · Nature Mental Health · doi:10.1038/s44220-024-00226-0 · Cited by 64
“The predictive performance of PRS for these six diseases is shown in Thompson et al. 112 .”
Thompson, A. S., Candussi, C. J., Tresserra‐Rimbau, A., Jennings, A., Bondonno, N. P., Hill, C., Sowah, S. A., Cassidy, A., & Kuhn, T. E. (2023) · Diabetes & Metabolism · doi:10.1016/j.diabet.2023.101499 · Cited by 45
Plant‐Based Dietary Patterns and Parkinson's Disease: A Prospective Analysis of the UK Biobank
Tresserra‐Rimbau, A., Thompson, A. S., Bondonno, N. P., Jennings, A., Kuhn, T. E., & Cassidy, A. (2023) · Movement Disorders · doi:10.1002/mds.29580 · Cited by 38
“Food Intake and Parkinson’s Figure 1 and eTable 6 in Data S1 show the HR and 95% CI for the associations between the food groups that compose the scores and risk of PD. Participants in the top quintile of vegetable intake had a 28% lower risk of PD compared to the lowest quintile (HR = 0.72; 95% CI, 0.55–0.94; P-trend…”
MethodInfluentialJung, H., Jung, H., Baek, E. J., Kwon, S. Y., Kang, J., Lim, J. E., & Oh, B. (2024) · Communications Biology · doi:10.1038/s42003-024-05874-7 · Cited by 37
“Thisset was extracted using a selection method previously described by Thompson et al. 31 .”
InfluentialClimente-González, H., Oh, M., Chajewska, U., Hosseini, R., Mukherjee, S., Gan, W., Traylor, M., Hu, S., Fatemifar, G., Ghouse, J., et al. (2025) · Communications Medicine · doi:10.1038/s43856-025-00872-0 · Cited by 40
“Forinstance,mostparticipantsin theUKBiobankcohortareofEuropeanorigin,andtendtobehealthierand wealthierthanthegeneralUKpopulation 49 .”
InfluentialThompson, A. S., Jennings, A., Bondonno, N. P., Tresserra‐Rimbau, A., Parmenter, B. H., Hill, C., Perez‐Cornago, A., Kuhn, T. E., & Cassidy, A. (2024) · Nutrition and Diabetes · doi:10.1038/s41387-024-00288-0 · Cited by 36
“…index, multi-morbidity index, genetic risk of T2D (polygenic risk score (PRS) generated and issued by the UK Biobank for use upon request [17, 18]), Townsend deprivation index, family history of diabetes, hypercholesterolemia, hypertension, menopausal status, number of completed dietary…”
BackgroundMulti-omic spatial effects on high-resolution AI-derived retinal thickness
Jackson, V. E., Wu, Y., Bonelli, R., Owen, J. P., Scott, L. W., Farashi, S., Kihara, Y., Gantner, M. L., Egan, C. A., Williams, K. M., et al. (2025) · Nature Communications · doi:10.1038/s41467-024-55635-7 · Cited by 35
“Two of these, the Standard and Enhanced PRSs , were downloaded from the UK Biobank having been generated and deposited in the UKBiobank as described by Thompson and colleagues 78 (Categories 301 and 302).”
Chen, H., Dunk, M. M., Wang, B., Zhao, M., Shen, J., Zong, G., Pan, Y., Tong, L., Xu, W., & Yuan, C. (2023) · Alzheimer s & Dementia · doi:10.1002/alz.13521 · Cited by 36
Ye, Y.-X., Chen, J.-X., Li, Y., Lai, Y.-W., Lu, Q., Xia, P., Franco, O. H., Liu, G., & Pan, A. (2024) · American Journal of Clinical Nutrition · doi:10.1016/j.ajcnut.2024.06.014 · Cited by 32
Association between allostatic load and breast cancer risk: a cohort study
Guan, Y.-F., Shen, J., Lu, J., Fuemmeler, B., Shock, L. S., & Zhao, H. (2023) · Breast Cancer Research · doi:10.1186/s13058-023-01754-w · Cited by 31
“Detailed information on how the PRS was generated has been described previous by Thompson et al. [25].”
MethodClark, R., Lee, S. S., Du, R., Wang, Y., Kneepkens, S. C. M., Charng, J., Huang, Y. S., Hunter, M. L., Jiang, C., Tideman, J. W. L., et al. (2023) · EBioMedicine · doi:10.1016/j.ebiom.2023.104551 · Cited by 33
Zhang, J., Na, X., Li, Z., Ji, J. S., Li, G., Hai-bing, Y., Yang, Y., Tan, Y., Zhang, J., Xi, M., et al. (2024) · BMC Medicine · doi:10.1186/s12916-024-03357-4 · Cited by 34
“The standard PRS for AD was calculated by meta-analyzing two external genome wide association study sources, which could be used for assessing the AD genetic susceptibility, and a higher PRS indicated more risk for AD [30].”
MethodWang, K., Liu, F., Wu, W., Hu, C., Shen, X., Wang, M., Li, G., Zeng, F., Liu, L., Wong, I. N., et al. (2025) · Nature Medicine · doi:10.1038/s41591-025-04006-w · Cited by 36
“This study highlights the potential of EHRFormer as a powerful tool for predicting BA across the full life cycle, providing novel insights into aging processes and their association with disease risks 30,32,33 .”
Large-Scale Plasma Proteomics Profiles for Predicting Ischemic Stroke Risk in the General Population
Gan, X., Yang, S., Zhang, Y., Ye, Z., Zhang, Y., Xiang, H., Huang, Y., Wu, Y., Zhang, Y., & Qin, X. (2024) · Stroke · doi:10.1161/strokeaha.124.048654 · Cited by 33
Ni, J., Zhou, Q., Meng, S., Zhou, T.-D., Tian, T., & Pan, H.-F. (2024) · BMC Medicine · doi:10.1186/s12916-024-03615-5 · Cited by 27
“We obtained the released standard GRS for RA from UK Biobank [21].”
MethodWhole exome sequencing analyses identified novel genes for Alzheimer's disease and related dementia
Zhang, Y.-R., Wu, B., Chen, S., Yang, L., Deng, Y., Guo, Y. X., Wu, X., Liu, W., Kang, J., Feng, J., et al. (2024) · Alzheimer s & Dementia · doi:10.1002/alz.14181 · Cited by 29
Gu, T., Han, Y., & Duan, R. (2022) · Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · doi:10.1142/9789811270611_0018 · Cited by 26
Yang, W., Wang, J., Dove, A. E., Dunk, M. M., Qi, X., Bennett, D. A., & Xu, W. (2024) · The British Journal of Psychiatry · doi:10.1192/bjp.2024.13 · Cited by 29
Matatall, K. A., Wathan, T. K., Nguyen, M., Chen, H., McDonald, A., Qi, G., Belk, J. A., Florez, M. A., Le, D. T., Olarinde, T., et al. (2025) · Cell Stem Cell · doi:10.1016/j.stem.2025.06.006 · Cited by 23
Hu, J., Shang, C., Huang, Y., Sun, C., & Zhang, J. (2025) · Cardiovascular Diabetology · doi:10.1186/s12933-025-02961-9 · Cited by 20
“Individuals with higher PRS tend to exhibit a greater genetic risk for developing diseases [27, 41].”
Xing, M.-Q., Ma, Y., Cui, F.-P., Li, D.-K., Wang, J.-N., Tang, L.-X., Zheng, L., Yang, J., & Tian, Y.-H. (2024) · Arthritis & Rheumatology · doi:10.1002/art.42929 · Cited by 23
“30 The PRS algorithms are based on trait-speci fi c meta-analyses using a Bayesian approach, in which appropriate data are combined across multiple ancestries and associated characteristics.”
Huang, Y., Ma, Y., Gao, P., Cui, X.-H., Hou, J., Chi, H., Fu, Y., Wang, Z., Feng, J., Cheng, W., et al. (2024) · npj Parkinson s Disease · doi:10.1038/s41531-024-00633-1 · Cited by 23
“Thompson et al. generated a Standard PRS Set, calculated on all UKB individuals, for 28 diseases and eight quantitative traits by meta-analyzing multiple external GWAS sources 42 .”
MethodGenetic architectures of cerebral ventricles and their overlap with neuropsychiatric traits
Ge, Y., Wu, B., Zhang, Y., Chen, S.-D., Zhang, Y.-R., Kang, J., Deng, Y., Ou, Y., He, X., Zhao, Y., et al. (2023) · Nature Human Behaviour · doi:10.1038/s41562-023-01722-6 · Cited by 28
“To evaluate the association between genetic liability to neuropsychiatric disorders and ventricular traits, we leveraged the standard PRS for AD, PD, BP and SCZ provided by UKB in the PRS Release (Category 301) 110 .”
Omega-3 Fatty Acids as Protective Factors for Age-Related Macular Degeneration
Xue, C. C., Li, H., Yu, M., Chong, C. C. Y., Fan, Q., Tham, Y. C., Cheung, C. M. G., Wong, T. Y., Chew, E. Y., & Cheng, C. (2024) · Ophthalmology · doi:10.1016/j.ophtha.2024.12.005 · Cited by 24
Viigimaa, M., Jürisson, M., Pisarev, H., Kalda, R., Alavere, H., Irs, A., Saar, A., Fischer, K., Läll, K., Kruuv-Käo, K., et al. (2022) · European Heart Journal Open · doi:10.1093/ehjopen/oeac079 · Cited by 24
Association of sarcopenia with the long‐term risk of atrial fibrillation: A prospective cohort study
Tang, Y., Liu, Z., Chen, Q., Juaiti, M., Yu, Z., Liang, B., & Zha, L. (2024) · Aging Cell · doi:10.1111/acel.14198 · Cited by 23
Yang, S., Zhu, Z., Chen, S., Yuan, Y., He, M., & Wang, W. (2023) · Nature Communications · doi:10.1038/s41467-023-42404-1 · Cited by 23
“…the results, we used the upper quartile of the AMD-PRS constructed based on meta-analyzed summary statistics GWAS data as a cut-off point to divide population-I into two subgroups for separate analyses, and no association was observed when analyzing participants with the highest AMD-PRS 48,49 .”
MethodAir pollutants, genetic susceptibility and the risk of schizophrenia: large prospective study
Liu, R., Li, D.-K., Ma, Y., Tang, L., Chen, R.-Q., & Tian, Y.-H. (2024) · British Journal of Psychiatry · doi:10.1192/bjp.2024.118 · Cited by 19
“19 Furthermore, although validating the performance of PRS or comparing different PRS algorithms presents considerable challenges, the UK Biobank has developed and released a robust PRS evaluation tool to facilitate comprehensive and comparable assessments of predictive performance across various…”
Nightingale Health Biobank Collaborative Group, Barrett, J. C., Esko, T., Fischer, K., Jostins-Dean, L., Jousilahti, P., Julkunen, H., Jääskeläinen, T., Kerimov, N., Kerminen, S., et al. (2023) · medRxiv · doi:10.1101/2023.06.09.23291213 · Cited by 19
“metabolomics) can identify individuals at high risk of a wide range of diseases mirrors the concept of polygenic scores (PGS), which have received widespread attention as an opportunity for personalized preventative medicine (8, 22, 23).”
BackgroundWang, W., Wang, X.-Y., Jiang, Y., Guo, Y., Fu, P.-F., He, W., & Fu, X. (2024) · British Journal of Cancer · doi:10.1038/s41416-024-02906-1 · Cited by 18
“We used I 2 statistics to assess heterogeneity across studies, and the results were pooled using random-effects models when I 2 > 50%; otherwise, a fi xed-effects model was used.”
Luo, C.-Y., Luo, J.-H., Zhang, Y.-H., Lu, B., Li, N., Zhou, Y., Chen, S., Wu, S.-L., Zhang, Q.-S., Dai, M., et al. (2024) · Journal of the National Cancer Center · doi:10.1016/j.jncc.2024.04.006 · Cited by 18
“Standard PRS for CRC has been recently released by the UK Biobank, as described in Thompson et al. 22 The missing values on continued covariates were replaced with the sex-specific mean value, and missing values on categorical covariates were considered as the “unknown ” category.”
Wang, S., Xu, L., Yang, W.-Z., Wang, J., Dove, A., Qi, X., & Xu, W.-L. (2024) · British Journal of Sports Medicine · doi:10.1136/bjsports-2023-108048 · Cited by 17
“…who were diagnosed with dementia within the first 3 years of follow-up (online supplemental tables 14 and 15); (3) further adjusting for statins, β -blockers, and calcium channel blockers (online supplemental tables 16 and 17); and (4) using non-imputed data (online supplemental tables 18 and 19).”
Sittichokkananon, A., Garfield, V., & Chiesa, S. T. (2025) · Circulation · doi:10.1161/circulationaha.124.070632 · Cited by 27
“Covariates included age, sex, level of education completed (less than secondary, secondary, or higher), socioeconomic status (Townsend deprivation index), and self-reported use of lipid, BP, or glucose-lowering medications at baseline visit.”
Sun, Y. B., Yu, B., Yu, Y., Wang, B., Tan, X. W., Lu, Y., Wang, Y., Zhang, K., & Wang, N. (2024) · Circulation Arrhythmia and Electrophysiology · doi:10.1161/circep.123.012145 · Cited by 25
“…the current analyses: age, sex, ethnicity (White/others), education level (university or college degree/others), the Townsend deprivation index (reflecting socioeconomic status), current smoking (yes/no), alcohol consumption (g/wk), ideal physical activity level (yes/no), sleep duration…”
BackgroundLi, C., Gao, D.-Y., Cai, Y., Liang, J., Wang, Y., Pan, Y., Zhang, W.-Y., Zheng, F., & Xie, W. (2023) · Health Data Science · doi:10.34133/hds.0091 · Cited by 17
“…examine whether traffic exposures were associated with dementia incidence independently from genetic risk determinants and investigate the potential gene– environment interaction, we additionally controlled for the APOE ε 4 carrier status and polygenic risk score (PRS) of Alzheimer’s disease [40].”
MethodDeep Phenotyping of Heart Failure with Preserved Ejection Fraction Through Multi-Omics Integration
Versnjak, J., Kühne, T., Fahjen, P., Jovanović, N. D., Löber, U., Schiattarella, G. G., Wilck, N., Gerhardt, H., Müller, D. N., Edelmann, F., et al. (2025) · European Journal of Heart Failure · doi:10.1002/ejhf.70041 · Cited by 25
Associations of ambient air pollution with incidence and dynamic progression of atrial fibrillation
Zhang, J., Luo, L., Chen, G., Ai, B., Wu, G., Gao, Y., Lip, G. Y. H., Lin, H., & Chen, Y. (2024) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2024.175710 · Cited by 18
Tsuo, K., Shi, Z., Ge, T., Mandla, R., Hou, K., Ding, Y., Paşaniuc, B., Wang, Y., & Martin, A. R. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.08.06.606846 · Cited by 20
“Briefly, we projected all AoU individuals into the PC space using pre-estimated weights of 168,899 variants 20 from the Human Genome Diversity Panel (HGDP) 52 and 1000 Genomes Project 53 .”
Blose, B. A., Silverstein, S. M., Stuart, K., Keane, P., Khawaja, A., & Wagner, S. (2024) · Psychiatry Research · doi:10.1016/j.psychres.2024.116106 · Cited by 16
“Description of the GWAS data, details of the meta-analysis, and PRS calculation are described in (Thompson et al., 2022).”
MethodInfluentialUrbut, S., Yeung, M., Khurshid, S., Cho, S. J., Schuermans, A., German, J., Taraszka, K., Paruchuri, K., Fahed, A., Ellinor, P., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-49296-9 · Cited by 16
“Data supporting these scores were entirely from external GWAS data (the Standard PRS set) as conducted by Genomics PLC (Oxford, UK) under UKB project 9659 45 .”
InfluentialPeng, X.-D., Li, Y.-K., Liu, N., Xia, S., Li, X., Lai, Y., He, L., Sang, C., Dong, J.-Z., & Ma, C.-S. (2024) · Circulation: Arrhythmia and Electrophysiology · doi:10.1161/circep.124.013037 · Cited by 14
Proteomic prediction of common and rare diseasesPreprint
Carrasco-Zanini, J., Pietzner, M., Davitte, J., Surendran, P., Croteau-Chonka, D., Robins, C., Torralbo, A., Tomlinson, C., Fitzpatrick, N., Ytsma, C., et al. (2023) · medRxiv · doi:10.1101/2023.07.18.23292811 · Cited by 14
Beydoun, M. A., Beydoun, H. A., Li, Z., Hu, Y., Hooten, N. N., Ding, J., Hossain, S. A., Vieytes, C. A. M., Launer, L. J., Evans, M. K., et al. (2024) · GeroScience · doi:10.1007/s11357-024-01413-8 · Cited by 15
“…GWAS summary statistics that were either completely extracted from external GWAS data (the Standard PRS set) or from a combination of external and internal UK Biobank data (the Enhanced PRS set) using a Bayesian approach[24], found in: https:// www. medrx iv. org/ conte nt/https:// doi. org/ 10.”
InfluentialWang, H., Wang, J., Zeng, Y., Yang, H., Chen, W., Shen, Q., & Song, H. (2024) · Alzheimer s Research & Therapy · doi:10.1186/s13195-024-01592-8 · Cited by 13
“The polygenic risk score (PRS) combining multiple risk genes for AD provides a quantitative measure of the genetic risk of dementia [24].”
BackgroundMethodXiong, L. Y., Alexander, M. W., Wong, Y. Y., Wu, C., Ruthirakuhan, M. T., Edwards, J. D., Lanctôt, K. L., Black, S. E., Rabin, J. S., Cogo‐Moreira, H., et al. (2024) · Molecular Psychiatry · doi:10.1038/s41380-024-02685-4 · Cited by 16
“PRS values were centered and standardized to produce a corrected PRS value [27].”
Zheng, S.-L., Jurgens, S., McGurk, K. A., Xu, X., Grace, C., Theotokis, P., Buchan, R., Francis, C., de Marvao, A., Curran, L., et al. (2023) · medRxiv · doi:10.1101/2023.03.14.23286621 · Cited by 13
Self-citationXin, J., Jiang, X., Li, H., Chen, S., Zhang, Z., Wang, M., Gu, D., Du, M., & Christiani, D. C. (2023) · EBioMedicine · doi:10.1016/j.ebiom.2023.104454 · Cited by 22
Yiangou, K., Mavaddat, N., Dennis, J., Zanti, M., Wang, Q., Bolla, M. K., Abubakar, M., Ahearn, T. U., Andrulis, I. L., Anton‐Culver, H., et al. (2024) · Breast Cancer Research · doi:10.1186/s13058-024-01947-x · Cited by 24
“We also evaluated a “standard” breast cancer PRS available in the UK Biobank data, previously generated from external GWAS data [35] and was available for 222,989 individuals (Table S1B).”
Shi, Z., Zhu, W., Lei, Z., Yan, X., Zhang, X., Wei, S., & Wang, Q. (2024) · Journal of Nutrition · doi:10.1016/j.tjnut.2024.09.017 · Cited by 15
Adding salt to foods and risk of psoriasis: A prospective cohort study.
Zhou, G.-W., Gan, L., Zhao, B., Fang, F., Liu, H., Chen, X., & Huang, J.-Q. (2024) · Journal of Autoimmunity · doi:10.1016/j.jaut.2024.103259 · Cited by 12
Validity of European-centric cardiometabolic polygenic scores in multi-ancestry populations
Topriceanu, C., Chaturvedi, N., Mathur, R., & Garfield, V. (2024) · European Journal of Human Genetics · doi:10.1038/s41431-023-01517-3 · Cited by 12
“In general, UK Biobank standard and enhanced PGSs had markedly better performance in White Europeans compared to South Asians and African Caribbeans when evaluating cardiometabolic phenotypes.”
BackgroundMethodInfluentialKim, J., Kim, D., Bae, H., Park, B., Kang, T. S., Lim, S., Lee, S. Y., Chung, Y. H., Ryu, J. W., Lee, M., et al. (2024) · Cardiovascular Diabetology · doi:10.1186/s12933-023-02021-0 · Cited by 12
“Details for generating the PRS have been previously described [25].”
MethodInfluentialWang, Y.-X., Chen, S., Li, Y., Lu, Q., Li, R., Chen, J.-X., Zhang, J.-J., Yu, H., Xu, H., Xie, J.-C., et al. (2025) · Cardiovascular Diabetology · doi:10.1186/s12933-025-02776-8 · Cited by 11
“The UK Biobank PRS scores were generated using a Bayesian approach applied to meta-analyzed summary statistics from external genome-wide association studies (GWAS) [19], and have been widely adopted in studies utilizing UK Biobank data [20, 21].”
Associations between serum lipids and glaucoma: a cohort study of 400 229 UK Biobank participants
Ma, Y., Wu, Y., Hu, L., Chen, W., Zhang, X., Zheng, D., Congdon, N. G., Jin, G., & Liu, Z. (2025) · British Journal of Ophthalmology · doi:10.1136/bjo-2024-326062 · Cited by 11
“16 In this study, we used the enhanced polygenic risk score for HDL-C, LDL-C, TC, and TG to examine the associations between genetic determinants of serum lipid and glaucoma.”
Serum albumin, genetic susceptibility, and risk of venous thromboembolism
Sun, Y.-Y., Deng, J., Ding, Y.-J., Luo, S., Li, S., Guan, Y., Cao, X., Hao, X.-J., & Hu, Y. (2024) · Research and Practice in Thrombosis and Haemostasis · doi:10.1016/j.rpth.2024.102509 · Cited by 11
“The weights utilized in the PRS model were obtained from a meta-analysis conducted on 4 independent VTE GWAS datasets, which comprised 29,799 cases and 475,303 controls from the Electronic Medical Records and Genomics cohorts [22].”
MethodCombining rare and common genetic variants improves population risk stratification for breast cancer
Bolze, A., Kiser, D., Barrett, K. S. S., Elhanan, G., Blitstein, J. M. S., Neveux, I., Dabe, S., Reed, H., Anderson, A., Metcalf, W., et al. (2023) · medRxiv · doi:10.1016/j.gimo.2024.101826 · Cited by 11
Reyes, D. M., Bose, A., Karavani, E., & Parida, L. (2022) · Pacific Symposium on Biocomputing (PSB) · doi:10.1142/9789811270611_0019 · Cited by 6
“23 The fact that improvement in accuracy did not come at the expense of either group is reassuring, suggesting FairPRS is safe in the sense it might not cause more harm than using regular PRS.”
Hu, W., Zhao, C.-H., Huang, Y., Liu, B.-P., & Jia, C.-X. (2024) · npj Parkinson s Disease · doi:10.1038/s41531-024-00810-2 · Cited by 13
“More detailed information on the PRS can be found in previous studies 25 – 27 .”
MethodJiang, W., Tang, Y., Yang, R., Long, Y., Sun, C., Han, T., & Wei, W. (2024) · BMC Medicine · doi:10.1186/s12916-024-03256-8 · Cited by 12
“Moreover, we also included the genetic risk score of HbA1c based on the initial release of PRS in the UK biobank [23].”
MethodFreudenberg‐Hua, Y., Li, W., Lee, U. J., Ma, Y., Koppel, J. L., & Goate, A. (2024) · EBioMedicine · doi:10.1016/j.ebiom.2024.104978 · Cited by 8
“36 We obtained these PRS for AD from the UKB data-fi eld 26,206.”
MethodBeydoun, M. A., Hu, Y., Li, Z., Georgescu, M. F., Beydoun, H. A., Hooten, N. N., Walker, K. A., Bouhrara, M., Launer, L. J., Evans, M. K., et al. (2025) · GeroScience · doi:10.1007/s11357-025-01724-4 · Cited by 9
“The Standard PRS set was extracted from external GWAS data, while the Enhanced PRS set combined genetic risk from external and internal sources to the UK Biobank data[14, 15].”
Bird, M., Rimbert, A., Pittman, A. M., Humphries, S., & Futema, M. (2024) · European Journal of Preventive Cardiology · doi:10.1093/eurjpc/zwae371 · Cited by 9
“All recruiting clinicians were affiliated with one of the Genomic Medical Centres, and all were experts in the field of lipidology with extensive experience in the identification and management of individuals with FH. Study participants were assigned Human Phenotype Ontology (HPO) terms at the time of recruitment to 1…”
InfluentialSelf-citationAgeML: Age Modeling With Machine Learning
Condado, J. G., Elorriaga, I. T., Cortés, J. M., & Erramuzpe, A. (2025) · IEEE Journal of Biomedical and Health Informatics · doi:10.1109/jbhi.2025.3531017 · Cited by 11
“Participants with multiple comorbidities were excluded to mitigate potential mixed effects.”
Song, X. Y., Ma, X., Yang, B., Zhang, D., Zou, Y., Lei, B., Xiang, R., Zhao, X., Qu, Y., Zheng, S., et al. (2025) · American Journal of Clinical Nutrition · doi:10.1016/j.ajcnut.2025.09.051 · Cited by 8
“The polygenic risk score (PRS) for RA was derived from validated “ Standard PRS (Category 301) ” provided in the UK Biobank Release [26,27].”
Hu, J., Yang, H., Liu, Y., Lu, Z., Zhang, X., Yang, H. J., Yang, Z., Wang, X., Liu, B., Cui, H., et al. (2025) · BMC Medicine · doi:10.1186/s12916-025-04025-x · Cited by 9
“Detailed information regarding access to these PRS data and GWAS resources can be found in an earlier study [21].”
Hernández, C. F., Villamán, C., Leu, C., Lal, D., Mata, I. F., Klein, A. D., & Pérez‐Palma, E. (2025) · Scientific Reports · doi:10.1038/s41598-025-95755-8 · Cited by 9
Domestic water hardness, genetic risk, and distinct phenotypes of cardiovascular disease
Tian, F., Yu, G.-F., Yang, M.-Y., Sun, Y., Gui, Z., Zhao, X.-Y., Wang, N., Wan, H., & Peng, X. (2025) · Environmental Health · doi:10.1186/s12940-025-01166-7 · Cited by 8
“The genetic risk score for AF, CHD, and stroke was based on the standard polygenic risk score (PRS, field ID 26212, 26227, and 26248 in UK Biobank, respectively) supported by external genome-wide association studies data [16].”
Increased sodium consumption is associated with psoriasis: A population‐based cohort study
Chattopadhyay, A., Ye, M., Chiang, B. M., Halezeroğlu, Y., Blarigan, E. L. V., Liao, W. J., Bhutani, T., & Abuabara, K. (2025) · Journal of the European Academy of Dermatology and Venereology · doi:10.1111/jdv.20540 · Cited by 9
“…tested for effect modification by polygenic risk score, leveraging a psoriasis standard polygenic risk score available in UK Biobank that was previously developed from four genome-wide association studies, 31 and we examined results stratified by polygenic risk score quintile based on prior work.”
HbA1c and the Risk of Lower Limb Ulcers Among Diabetic Patients: An Observational and Genetics Study
Guo, G., Guan, Y., Chen, Y., Ye, Y., Gan, Z., Cao, X., Chen, Z., & Hao, X. (2025) · Journal of Diabetes Research · doi:10.1155/jdr/4744194 · Cited by 10
“As described previously, the standard PRS of HbA1c was calculated as the genome-wide sum of the per-variant e ff ect size multiplied by allele dosage [32].”
Li, G., He, Q., Sun, M., Ma, Z., Zhao, H., Wang, Y., Feng, Z., Li, T., Chu, J., Hu, W., et al. (2024) · Journal of Affective Disorders · doi:10.1016/j.jad.2024.08.011 · Cited by 10
Chen, L., Chen, H., Mo, L., He, M., Zhao, Y., Tan, T., Yao, P., Tang, Y.-H., Li, X.-Z., & Li, Y.-Y. (2024) · Journal of Global Health · doi:10.7189/jogh.14.04139 · Cited by 8
“Another possible approach was to retrieve the psoriasis-related PRS variable directly from the UK Biobank (variable number 26269) [20].”
BackgroundYang, H.-H., Chang, Q., Ji, C., Zheng, G., Ma, Z., Chen, L., Xia, Y., & Zhao, Y.-H. (2024) · International Journal of Behavioral Nutrition and Physical Activity · doi:10.1186/s12966-024-01617-3 · Cited by 8
“The polygenic risk scores (PRS) were calculated by the UK Biobank team [22].”
MethodDu, J., Pan, Y., Jiang, J.-Y., Liu, Y., Lam, B. C. P., Schutte, A., Tsang, I., Sachdev, P. S., & Wen, W. (2024) · HYPERTENSION · doi:10.1161/hypertensionaha.123.22176 · Cited by 8
Zhang, H., Zhang, X., Yang, H., Yang, H., Zhang, T., Chen, L., Zhao, Y., & Xia, Y. (2024) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2024.129824 · Cited by 9
Xiao, Z., Li, Q., Guo, X., Long, G., Meng, Z., & Xu, C. Y. (2025) · Environmental Research · doi:10.1016/j.envres.2025.122197 · Cited by 9
Segan, L. A., Ho, W. W. H., Crowley, R. F., William, J., Cho, K. K., Prabhu, S., Chieng, D., Sugumar, H., Voskoboinik, A., Ling, L., et al. (2025) · Heart Rhythm · doi:10.1016/j.hrthm.2025.04.032 · Cited by 12
Woerner, J., Westbrook, T. M., Jeong, S., Shivakumar, M., Greenplate, A., Apostolidis, S. A., Lee, S., Nam, Y., & Kim, D. (2024) · Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing · doi:10.1142/9789819807024_0037 · Cited by 7
“The PRS model was based on scores from Thompson et al., 30 which were added as predictors to an unpenalized logistic regression with the covariates.”
Macri, C., Wong, C. X., Tu, S., Sun, D. F., Casson, R. J., Singh, K., Wang, S. Y., & Sun, M. T. (2024) · Clinical and Experimental Ophthalmology · doi:10.1111/ceo.14467 · Cited by 7
Lin, F., Shi, Y., Song, W., Weng, Y., Zou, X., Chen, X., Zheng, J., Chen, K., Ye, Q., Wu, X., et al. (2024) · BMC Medicine · doi:10.1186/s12916-024-03497-7 · Cited by 8
“We here used the standard PRS for PD released by the UK Biobank (Field ID: 26,260), which was extracted from an external GWAS meta-analysis dataset, as described by Thompson et al. [25]; these authors had calculated PRS for 28 diseases and 25 quantitative traits.”
MethodWang, Y.-S., Mi, N., Liao, K., Li, Y., Sun, Y., Xie, P., Hu, L., Wu, S., Liang, Z.-X., He, Q., et al. (2024) · American Journal of Clinical Nutrition · doi:10.1016/j.ajcnut.2024.08.027 · Cited by 7
Night shift work and myocardial infarction in the UK Biobank
Yang, M. J., Jia, Z. W., Wang, E., Li, J., Tang, A. M., Song, Z., & Zhang, Z. (2024) · Occupational Medicine · doi:10.1093/occmed/kqae045 · Cited by 7
Green space, genetic susceptibility, and risk of osteoporosis:a cohort study from the UK Biobank.
Yao, X.-I., Tong, X., Shen, C., Song, Y., Sun, S.-Z., Chen, K., & Shen, H. (2024) · Chemosphere · doi:10.1016/j.chemosphere.2024.141632 · Cited by 7
Liang, B., Zha, L., Peng, B., Chen, Q., Juaiti, M., Zeng, X., Feng, Y., Yu, Z., & Tang, Y. (2024) · Thrombosis and Haemostasis · doi:10.1055/a-2305-6631 · Cited by 9
“16 We found that there were some overlapping pathogenic SNPs between our PRS model and previously published PRS models, such as classical FVLeidenmutation(rs6025),prothrombinG20210Amutation (rs1799963), and fi brinogen gamma chain mutation (rs2066865).”
Ogbunugafor, C. B., & Edge, M. D. (2022) · Genetics · doi:10.1093/genetics/iyac142 · Cited by 8
“…human height, a titanic meta-analysis of 5.4 million people has led to a genetic predictor—i.e. a “polygenic score” (see Box 2 for background) (Torkamani et al. 2018; Thompson et al. 2022)—that explains 40% of the variance in height in a sample of people of European ancestries (Yengo et al. 2022).”
InfluentialMa, S., Jiang, M., Xuan, Y., Shen, Y., Chen, K., & Li, B. (2026) · Cardiovascular Diabetology · doi:10.1186/s12933-026-03154-8 · Cited by 8
“The UK Biobank has made available standard polygenic risk scores (PRSs) for 53 diseases and traits, which provide strong capacity for risk stratification [59].”
Parent, O., Alasmar, Z., Osborne, S., Bussy, A., Costantino, M., Fouquet, J. P., Quesada, D., Pastor-Bernier, A., Fajardo-Valdez, A., Binette, A. P., et al. (2025) · medRxiv · doi:10.1101/2025.06.10.25329342 · Cited by 6
“41,76 We used the standard PRS calculated on all UK Biobank participants.”
Ultra-Processed Food Consumption and the Risk of Psoriasis: A Large Prospective Cohort Study
Peng, X., Li, X.-Z., He, J., He, M., Ning, N., Chen, L., Yao, P., Tang, Y.-H., & Li, Y.-Y. (2025) · Nutrients · doi:10.3390/nu17091473 · Cited by 6
Plasma proteomic signatures for type 2 diabetes and related traits in the UK Biobank cohort
Gupte, T. P., Azizi, Z., Kho, P. F., Zhou, J., Nzenkue, K., Chen, M., Panyard, D. J., Guarischi‐Sousa, R., Hilliard, A. T., Sharma, D., et al. (2024) · Diabetes Research and Clinical Practice · doi:10.1016/j.diabres.2025.112194 · Cited by 11
Cao, B., Zhao, X., Lu, Z., & Zhang, H. (2025) · The journal of nutrition health & aging · doi:10.1016/j.jnha.2025.100505 · Cited by 8
Türkmen, D., Liang, X., Masoli, J. A. H., Gill, D., Pilling, L. C., & Bowden, J. (2025) · BMC Medicine · doi:10.1186/s12916-025-04228-2 · Cited by 6
“We also included polygenic scores (PGS) derived by Genomics PLC [25] (UKB category 301): 8 PGS for relevant biomarkers and patient characteristics (e.g. LDL-c, BMI) and 28 PGS for genetic liability to disease (e.g. CVD, schizophrenia).”
Metadata
- Authors
- Thompson, D. J., Wells, D., Selzam, S., Peneva, I., Moore, R., Sharp, K., Tarran, W. A., Beard, E. J., Riveros-Mckay, F., Giner-Delgado, C., Palmer, D., Seth, P., Harrison, J., Futema, M., Genomics England Research Consortium, McVean, G., Plagnol, V., Donnelly, P., & Weale, M. E.
- Affiliations
- Genomics (United Kingdom) (GB)
- St George's, University of London (GB)
- Corresponding author
- Weale, Michael E.
- ORCID
- Venue
- medRxiv
- Publisher
- openRxiv
- Published
- 2022-06-16
- OpenAlex
- W4283067507
- Cited by
- 280
- References
- 41
- Citations by year
- 2026: 47 · 2025: 84 · 2024: 109 · 2023: 32 · 2022: 8
- Type
- posted content
- Language
- en
- Open access
- green
- doi.org
- Licence
- cc-by
- Locations
- medRxiv (acceptedVersion, cc-by)
- Funders
- Medical Research Council (MC_PC_17228)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genomics and Rare Diseases
- Keywords
- polygenic risk score, UK Biobank, disease risk prediction, quantitative traits, genetic risk prediction, clinical utility
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