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Spatially Resolved Single-cell Translatomics at Molecular Resolution
Open accessPreprint — published as 10.1126/science.add3067
Abstract
The precise control of mRNA translation is a crucial step in post-transcriptional gene regulation of cellular physiology. However, it remains a major challenge to systematically study mRNA translation at the transcriptomic scale with spatial and single-cell resolutions. Here, we report the development of RIBOmap, a three-dimensional (3D) in situ profiling method to detect mRNA translation for thousands of genes simultaneously in intact cells and tissues. By applying RIBOmap to 981 genes in HeLa cells, we revealed remarkable dependency of translation on cell-cycle stages and subcellular localization. Furthermore, we profiled single-cell translatomes of 5,413 genes in the adult mouse brain tissue with a spatial cell atlas of 62,753 cells. This spatial translatome profiling detected widespread patterns of localized translation in neuronal and glial cells in intact brain tissue networks. Together, RIBOmap presents the first spatially resolved single-cell translatomics technology, accelerating our understanding of protein synthesis in the context of subcellular architecture, cell types, and tissue anatomy.
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Metadata
- Authors
- Zeng, H., Huang, J., Ren, J., Wang, C. K., Tang, Z., Zhou, Y., Aditham, A., Shi, H., Sui, X., & Wang, X.
- Affiliations
- Broad Institute (US)
- Corresponding author
- Zeng, Hu
- Huang, Jiahao
- Ren, Jingyi
- Wang, Xiao
- ORCID
- Venue
- Science
- Publisher
- openRxiv
- Published
- 2022-09-28
- Volume
- 380
- Issue
- 6652
- Pages
- eadd3067-eadd3067
- ISSN
- 0036-8075 (ISSN-L)
- PMC
- PMC11146668
- OpenAlex
- W4382520315
- Cited by
- 198
- References
- 3
- Citations by year
- 2026: 51 · 2025: 60 · 2024: 71 · 2023: 16
- FWCI
- 17.59
- Type
- journal article
- Language
- en
- Open access
- green
- doi.org
- Licence
- cc-by-nc-nd
- Locations
- Science (publishedVersion)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- Helen Hay Whitney Foundation
- Harvard University
- Broad Institute
- Searle Scholars Program
- Zhejiang University
- Peking University
- National Institutes of Health (NIH DP2)
- National Institute of General Medical Sciences (DP2GM146245)
- National Institute of Arthritis and Musculoskeletal and Skin Diseases (T32AR007098)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Single-cell and spatial transcriptomics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Keywords
- mRNA translation, translatome, post-transcriptional regulation, oligodendrocyte maturation, HeLa cells, mouse brain
- MeSH terms
- Single-Cell Gene Expression Analysis, Animals, Brain, Chromosome Mapping, Gene Expression Regulation, HeLa Cells, Humans, Neuroglia, Neurons, RNA, Messenger, Protein Biosynthesis, Mice
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