PreprintCited by 13Cellular transport and secretionLipid Membrane Structure and BehaviorCaveolin-1 and cellular processes

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Molecular mechanisms of flotillin complexes in organizing membrane microdomains

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Preprint — published as 10.1038/s41467-026-69197-3 · Paper page

Abstract

Summary: Flotillin-1 and flotillin-2 form hetero-oligomers to create flotillin membrane microdomains essential for endocytosis and protein sorting. However, the mechanisms of flotillin oligomerization and microdomain organization remain incompletely understood. Here, we present the cryo-EM structure of human flotillin complex, showing that flotillin-1 and -2 form a 44-mer, membrane attached, and dome-shaped structure that defines a 30-nm circular membrane domain. The cryo-ET data demonstrates that while attached to the cytoplasmic leaflet in situ, flotillin complexes possess intrinsic structural plasticity on the native membrane. Each flotillin complex may represent a fundamental unit of membrane microdomains, with their clustering enabling the formation of larger and more elaborate domains. We further reveal that phosphorylation at residues Y160 (flotillin-1) and Y163 (flotillin-2) may act as a molecular switch to modulate complex assembly, potentially regulating its function in endocytosis. These findings demonstrate the molecular mechanism of flotillin-mediated membrane segregation and microdomain formation, and suggest a previously unrecognized role of flotillin in sequestrating membrane proteins.

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  1. 10.1126/science.1174621 · DOI · Paper page
  2. 10.1016/j.bbamem.2023.184135 · DOI
  3. 10.1038/nrm.2017.16 · DOI · Paper page
  4. 10.1038/s41580-022-00524-4 · DOI
  5. 10.1038/42408 · DOI · Paper page
  6. 10.1016/j.tcb.2020.01.009 · DOI
  7. 10.1074/jbc.272.21.13793 · DOI
  8. 10.1016/j.cub.2007.05.078 · DOI
  9. 10.1523/JNEUROSCI.5345-07.2008 · DOI
  10. 10.1038/ncb1342 · DOI
  11. 10.1242/jcs.039024 · DOI
  12. Abousawan, J. , Orofiamma, L. A. , Fairn, G. D. & Antonescu, C. N . HER2 expression defines unique requirements for flotillin and c-Src in EGFR signaling. J Cell Sci 136 (2023). · DOI
  13. 10.1038/s41467-019-12352-w · DOI
  14. 10.1038/oncsis.2017.47 · DOI
  15. 10.1042/bj20031100 · DOI
  16. Affentranger, S. , Martinelli, S. , Hahn, J. , Rossy, J. & Niggli, V . Dynamic reorganization of flotillins in chemokine-stimulated human T-lymphocytes. BMC Cell Biol 12, 28 (2011). · DOI
  17. 10.1242/jcs.03336 · DOI
  18. Kwiatkowska, K. , Matveichuk, O. V. , Fronk, J. & Ciesielska, A . Flotillins: At the Intersection of Protein S-Palmitoylation and Lipid-Mediated Signaling. Int J Mol Sci 21 (2020). · DOI
  19. 2020, Flotillin membrane domains in cancer, Cancer Metastasis Rev, 39, 361, 10.1007/s10555-020-09873-y · DOI
  20. 10.1091/mbc.12.10.3031 · DOI
  21. 10.1172/JCI42958 · DOI
  22. 10.1038/s41467-022-33951-0 · DOI
  23. 10.1038/s41422-020-00409-1 · DOI
  24. 10.1074/jbc.M110.134775 · DOI
  25. Planchon, D. et al. MT1-MMP targeting to endolysosomes is mediated by upregulation of flotillins. J Cell Sci 131 (2018). · DOI
  26. 10.1182/blood.V97.4.1141 · DOI
  27. 10.1016/j.tcb.2007.06.005 · DOI
  28. 10.1042/BJ20061686 · DOI
  29. 2025, Structural basis for membrane microdomain formation by a human Stomatin complex, Nat Commun, 16, 7439, 10.1038/s41467-025-62859-8 · DOI
  30. Vallese, F. , Li, H. & Clarke, O. B . Stomatin encapsulates aquaporin-1 and urea transporter-B in the erythrocyte membrane. bioRxiv (2025). · DOI
  31. 10.1038/s41556-025-01620-1 · DOI
  32. Luo, D. et al. Structural basis for prohibitin-mediated regulation of mitochondrial m-AAA protease. bioRxiv, 2025.2004.2015.648916 (2025). · DOI
  33. Gao, J. , Sherpa, D. , Kupko, N. & Shao, S . Structures of human organellar SPFH protein complexes. bioRxiv, 2025.2004.2021.649849 (2025). · DOI
  34. Yan, L. et al. Cryo-EM Structure of the Erlin1/2 Complex Reveals a Dynamic Scaffold for Membrane Protein Sequestration and Microdomain Assembly. bioRxiv, 2025.2006.2014.659634 (2025). · DOI
  35. 10.1016/J.CELREP.2022.110890 · DOI
  36. 10.1038/s41422-021-00598-3 · DOI
  37. 2025, Bacterial flotillins as destabilizers of phospholipid membranes, Biochim Biophys Acta Biomembr, 1867, 184399, 10.1016/j.bbamem.2024.184399 · DOI
  38. 10.1016/j.cell.2017.10.012 · DOI
  39. Zielinska, A. et al. Flotillin-mediated membrane fluidity controls peptidoglycan synthesis and MreB movement. Elife 9 (2020). · DOI
  40. 10.1128/MMBR.00036-14 · DOI
  41. 2013, Membrane domains and the "lipid raft" concept, Curr Med Chem, 20, 4
  42. 10.1073/pnas.2409334121 · DOI
  43. 10.1038/s41422-021-00598-3 · DOI
  44. 10.1096/fj.05-4760fje · DOI
  45. 10.1038/s41422-020-00409-1 · DOI
  46. 10.1194/jlr.E600002-JLR200 · DOI
  47. 10.1038/nprot.2012.059 · DOI
  48. 10.1016/j.bbamem.2007.08.028 · DOI
  49. 2022, Migrasome biogenesis and functions, FEBS J, 289, 7246, 10.1111/febs.16183 · DOI
  50. 2020, Membrane Compartmentalization and Scaffold Proteins in Leukocyte Migration, Front Cell Dev Biol, 8, 285, 10.3389/fcell.2020.00285 · DOI
  51. 10.1371/journal.pone.0197401 · DOI
  52. 2025, An asymmetric nautilus-like HflK/C assembly controls FtsH proteolysis of membrane proteins, EMBO J, 44, 2501, 10.1038/s44318-025-00408-1 · DOI
  53. 10.1007/s00018-015-1898-y · DOI
  54. 10.1016/j.bbamem.2013.07.018 · DOI
  55. Genest, M. et al. Upregulated flotillins and sphingosine kinase 2 derail AXL vesicular traffic to promote epithelial-mesenchymal transition. J Cell Sci 135 (2022). · DOI
  56. 10.1038/ncb2987 · DOI
  57. 2020, Measuring Ca(2+) in Living Cells, Adv Exp Med Biol, 1131, 7, 10.1007/978-3-030-12457-1_2 · DOI
  58. 10.1038/nature13567 · DOI
  59. 10.1074/mcp.T400008-MCP200 · DOI
  60. 10.1093/nar/gkm067 · DOI
  61. 10.1038/nature02013 · DOI
  62. 10.1074/jbc.M113.519116 · DOI
  63. 10.1016/j.bpj.2016.03.012 · DOI
  64. 10.1038/nmeth.2089 · DOI · Paper page
  65. 10.1038/nmeth.4193 · DOI
  66. 10.1016/j.jsb.2015.11.003 · DOI
  67. 10.1042/BCJ20210708 · DOI
  68. 10.1107/S0907444910007493 · DOI · Paper page
  69. 10.1093/NAR/GKAB1061 · DOI · Paper page
  70. 10.1107/S2059798318006551 · DOI
  71. 10.1107/S0907444909042073 · DOI · Paper page
  72. 10.1002/jcc.20084 · DOI
  73. 10.1016/j.cell.2017.12.030 · DOI
  74. 10.1016/j.jsb.2016.06.007 · DOI
  75. 2023, TOMOMAN: Streamlining Cryo-electron Tomography and Subtomogram Averaging Workflows Using TOMOgram MANager. Microscopy and microanalysis : the official journal of Microscopy Society of America, Microbeam Analysis Society, Microscopical Society of Canada, 29, 1020
  76. 10.1006/jsbi.1996.0013 · DOI
  77. 10.1038/s41592-019-0580-y · DOI
  78. Lamm, L. , et al. MemBrain v2: an end-to-end tool for the analysis of membranes in cryo-electron tomography. bioRxiv, 2024.2001.2005.574336 (2024). · DOI
  79. 10.1016/j.jsb.2004.10.006 · DOI
  80. 2023, Extensive Angular Sampling Enables the Sensitive Localization of Macromolecules in Electron Tomograms, 24, 13375
  81. 10.1038/nprot.2016.124 · DOI
  82. 10.1021/bi0156557 · DOI

Metadata

Authors
Lu, M.-A., Qian, Y., Ma, L., Hong, J., Li, X., Yu, L., Guo, Q., & Gao, N.
Affiliations
Peking University (CN)
Corresponding author
  • Guo, Qiang
  • Gao, Ning
Venue
Nature Communications
Publisher
openRxiv
Published
2024-05-25
Volume
17
Issue
1
ISSN
2041-1723 (ISSN-L)
OpenAlex
W7128440024
Cited by
13
References
1
Citations by year
2026: 8 · 2025: 3 · 2024: 2
FWCI
27.17
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • National Natural Science Foundation of China (92354306)
  • Beijing Natural Science Foundation (JQ24031)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Lipid Membrane Structure and Behavior
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Caveolin-1 and cellular processes
Keywords
flotillin-1, flotillin-2, lipid rafts, oligomerization, cryo-EM structure, cryo-electron tomography, phosphorylation, endocytosis, protein sorting, structural plasticity
MeSH terms
Endocytosis, Humans, Membrane Proteins, Phosphorylation, Cryoelectron Microscopy, Membrane Microdomains

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