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Comprehensive Overview of the Brassinosteroid Biosynthesis Pathways: Substrates, Products, Inhibitors, and Connections

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Unifying the known and unknown microbial coding sequence space

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Plant growth promotion by Pseudomonas putida KT2440 under saline stress: role of eptA

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Role of d-Cysteine Desulfhydrase in the Adaptation of Escherichia coli to d-Cysteine

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Pseudomonas syringaeBetT Is a Low-Affinity Choline Transporter That Is Responsible for Superior Osmoprotection by Choline over Glycine Betaine

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A nitrite-oxidising bacterium constitutively consumes atmospheric hydrogen

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Microbial polyphenol metabolism is part of the thawing permafrost carbon cycle

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Biochemical and Structural Aspects of Cytokinin Biosynthesis and Degradation in Bacteria

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The Biosynthesis and Functions of Polyamines in the Interaction of Plant Growth-Promoting Rhizobacteria with Plants

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Unravelling viral ecology and evolution over 20 years in a freshwater lake

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Characterization of Chryseobacterium aquaticum Strain PUPC1 Producing a Novel Antifungal Protease from Rice Rhizosphere Soil

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Mechanisms of H 2 S Production from Cysteine and Cystine by Microorganisms Isolated from Soil by Selective Enrichment

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Targeted isolation based on metagenome‐assembled genomes reveals a phylogenetically distinct group of thermophilic spirochetes from deep biosphere

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Autotrophic carbon fixation pathways along the redox gradient in oxygen‐depleted oceanic waters

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Bactericidal Effect of Pseudomonas oryziphila sp. nov., a Novel Pseudomonas Species Against Xanthomonas oryzae Reduces Disease Severity of Bacterial Leaf Streak of Rice

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Potential of mineral-solubilizing bacteria for physiology and growth promotion of Chenopodium quinoa Willd

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Comparative Genomics and Physiological Investigations Supported Multifaceted Plant Growth-Promoting Activities in Two Hypericum perforatum L.-Associated Plant Growth-Promoting Rhizobacteria for Microbe-Assisted Cultivation

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Structure and mechanism of the osmoregulated choline transporter BetT

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Widespread production of plant growth-promoting hormones among marine bacteria and their impacts on the growth of a marine diatom

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An ecological perspective on microbial genes of unknown function in soilPreprint

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CAMPER: curated annotations for profiling microbial polyphenol metabolic potentialPreprint

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Recovery of highly contiguous genomes from complex terrestrial habitats reveals over 15,000 novel prokaryotic species and expands characterization of soil and sediment microbial communitiesPreprint

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Agriculture alters protein evolution of nitrogen cycling genes in soil bacteria at a global scalePreprint

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Adaptative and ancient co-evolution of integrons with Xanthomonas genomes

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Comparative Metagenomics of Soda Lakes and the Rumen Reveals Novel Microbial Lineages and Carbohydrate-active Enzyme DiversityPreprint

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Diverse conjugative and mobilisable elements underpin key adaptive traits in XanthomonasPreprint

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Techniques in Molecular Diagnosis

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Soil microbial traits shift on contrasting timescales following restoration of former grazing lands

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Scaling and democratising structure-based protein function prediction with metagenomic-deepFRIPreprint

Bezshapkin, V., Schymik, F., Kucharski, P., Szczerbiak, P., Wojciechowski, J. W., Szydlowski, L. M., & Kościółek, T. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.04.27.720983

Annotating Metagenomically Assembled Bacteriophage from a Unique Ecological System using Protein Structure Prediction and Structure Homology SearchPreprint

Say, H., Joris, B. R., Giguere, D. J., & Gloor, G. B. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.04.19.537516 · Cited by 12 · see citing works

How much metagenome data is needed for protein structure prediction: The advantages of targeted approach from the ecological and evolutionary perspectives

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Decoding microbiome and protein family linkage to improve protein structure predictionPreprint

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Using metagenomic data to boost protein structure and function prediction

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